data_2ILY
#
_model_server_result.job_id            qrpWW7syLmab60WE0iWXsQ 
_model_server_result.datetime_utc      '2024-12-26 13:02:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ily 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    2ILY 
#
_exptl.entry_id    2ILY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2ILY 
_cell.length_a            128.526 
_cell.length_b            128.526 
_cell.length_c            112.891 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ILY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MET 95 A MET 95 1_555 A N CAS 96 A CAS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C CAS 96 A CAS 96 1_555 A N LEU 97 A LEU 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C GLY 211 A GLY 211 1_555 A N CAS 212 A CAS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale4 A C CAS 212 A CAS 212 1_555 A N ASP 213 A ASP 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 A C TYR 280 A TYR 280 1_555 A N CAS 281 A CAS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale6 A C CAS 281 A CAS 281 1_555 A N VAL 282 A VAL 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 A C GLY 289 A GLY 289 1_555 A N CAS 290 A CAS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale8 A C CAS 290 A CAS 290 1_555 A N SER 291 A SER 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
metalc ? metalc1 A O LEU 268 A LEU 268 1_555 B NA NA . A NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? 
metalc ? metalc2 A OG SER 271 A SER 271 1_555 B NA NA . A NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc3 A O GLY 284 A GLY 284 1_555 B NA NA . A NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
metalc ? metalc4 A O GLY 285 A GLY 285 1_555 B NA NA . A NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 77 n n 
PG O2G ATP sing 78 n n 
PG O3G ATP sing 79 n n 
PG O3B ATP sing 80 n n 
O2G HOG2 ATP sing 81 n n 
O3G HOG3 ATP sing 82 n n 
PB O1B ATP doub 83 n n 
PB O2B ATP sing 84 n n 
PB O3B ATP sing 85 n n 
PB O3A ATP sing 86 n n 
O2B HOB2 ATP sing 87 n n 
PA O1A ATP doub 88 n n 
PA O2A ATP sing 89 n n 
PA O3A ATP sing 90 n n 
PA O5' ATP sing 91 n n 
O2A HOA2 ATP sing 92 n n 
O5' C5' ATP sing 93 n n 
C5' C4' ATP sing 94 n n 
C5' "H5'1" ATP sing 95 n n 
C5' "H5'2" ATP sing 96 n n 
C4' O4' ATP sing 97 n n 
C4' C3' ATP sing 98 n n 
C4' H4' ATP sing 99 n n 
O4' C1' ATP sing 100 n n 
C3' O3' ATP sing 101 n n 
C3' C2' ATP sing 102 n n 
C3' H3' ATP sing 103 n n 
O3' HO3' ATP sing 104 n n 
C2' O2' ATP sing 105 n n 
C2' C1' ATP sing 106 n n 
C2' H2' ATP sing 107 n n 
O2' HO2' ATP sing 108 n n 
C1' N9 ATP sing 109 n n 
C1' H1' ATP sing 110 n n 
N9 C8 ATP sing 111 n y 
N9 C4 ATP sing 112 n y 
C8 N7 ATP doub 113 n y 
C8 H8 ATP sing 114 n n 
N7 C5 ATP sing 115 n y 
C5 C6 ATP sing 116 n y 
C5 C4 ATP doub 117 n y 
C6 N6 ATP sing 118 n n 
C6 N1 ATP doub 119 n y 
N6 HN61 ATP sing 120 n n 
N6 HN62 ATP sing 121 n n 
N1 C2 ATP sing 122 n y 
C2 N3 ATP doub 123 n y 
C2 H2 ATP sing 124 n n 
N3 C4 ATP sing 125 n y 
#
_atom_sites.entry_id                     2ILY 
_atom_sites.fract_transf_matrix[1][1]    0.007781 
_atom_sites.fract_transf_matrix[1][2]    0.004492 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008984 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008858 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 3001 3001 NA NA . 
C 3 ATP A 1 1001 1001 ATP ATP . 
D 4 ACY A 1 901 901 ACY ACY . 
E 4 ACY A 1 902 902 ACY ACY . 
F 4 ACY A 1 903 903 ACY ACY . 
G 4 ACY A 1 904 904 ACY ACY . 
H 4 ACY A 1 905 905 ACY ACY . 
I 4 ACY A 1 906 906 ACY ACY . 
J 4 ACY A 1 907 907 ACY ACY . 
K 5 HOH A 1 501 501 HOH HOH . 
K 5 HOH A 2 502 502 HOH HOH . 
K 5 HOH A 3 503 503 HOH HOH . 
K 5 HOH A 4 504 504 HOH HOH . 
K 5 HOH A 5 505 505 HOH HOH . 
K 5 HOH A 6 506 506 HOH HOH . 
K 5 HOH A 7 507 507 HOH HOH . 
K 5 HOH A 8 508 508 HOH HOH . 
K 5 HOH A 9 509 509 HOH HOH . 
K 5 HOH A 10 510 510 HOH HOH . 
K 5 HOH A 11 511 511 HOH HOH . 
K 5 HOH A 12 512 512 HOH HOH . 
K 5 HOH A 13 513 513 HOH HOH . 
K 5 HOH A 14 514 514 HOH HOH . 
K 5 HOH A 15 515 515 HOH HOH . 
K 5 HOH A 16 516 516 HOH HOH . 
K 5 HOH A 17 517 517 HOH HOH . 
K 5 HOH A 18 518 518 HOH HOH . 
K 5 HOH A 19 519 519 HOH HOH . 
K 5 HOH A 20 520 520 HOH HOH . 
K 5 HOH A 21 521 521 HOH HOH . 
K 5 HOH A 22 522 522 HOH HOH . 
K 5 HOH A 23 523 523 HOH HOH . 
K 5 HOH A 24 524 524 HOH HOH . 
K 5 HOH A 25 525 525 HOH HOH . 
K 5 HOH A 26 526 526 HOH HOH . 
K 5 HOH A 27 527 527 HOH HOH . 
K 5 HOH A 28 528 528 HOH HOH . 
K 5 HOH A 29 529 529 HOH HOH . 
K 5 HOH A 30 530 530 HOH HOH . 
K 5 HOH A 31 531 531 HOH HOH . 
K 5 HOH A 32 532 532 HOH HOH . 
K 5 HOH A 33 533 533 HOH HOH . 
K 5 HOH A 34 534 534 HOH HOH . 
K 5 HOH A 35 535 535 HOH HOH . 
K 5 HOH A 36 536 536 HOH HOH . 
K 5 HOH A 37 537 537 HOH HOH . 
K 5 HOH A 38 538 538 HOH HOH . 
K 5 HOH A 39 539 539 HOH HOH . 
K 5 HOH A 40 540 540 HOH HOH . 
K 5 HOH A 41 541 541 HOH HOH . 
K 5 HOH A 42 542 542 HOH HOH . 
K 5 HOH A 43 543 543 HOH HOH . 
K 5 HOH A 44 544 544 HOH HOH . 
K 5 HOH A 45 545 545 HOH HOH . 
K 5 HOH A 46 546 546 HOH HOH . 
K 5 HOH A 47 547 547 HOH HOH . 
K 5 HOH A 48 548 548 HOH HOH . 
K 5 HOH A 49 549 549 HOH HOH . 
K 5 HOH A 50 550 550 HOH HOH . 
K 5 HOH A 51 551 551 HOH HOH . 
K 5 HOH A 52 552 552 HOH HOH . 
K 5 HOH A 53 553 553 HOH HOH . 
K 5 HOH A 54 554 554 HOH HOH . 
K 5 HOH A 55 555 555 HOH HOH . 
K 5 HOH A 56 556 556 HOH HOH . 
K 5 HOH A 57 557 557 HOH HOH . 
K 5 HOH A 58 558 558 HOH HOH . 
K 5 HOH A 59 559 559 HOH HOH . 
K 5 HOH A 60 560 560 HOH HOH . 
K 5 HOH A 61 561 561 HOH HOH . 
K 5 HOH A 62 562 562 HOH HOH . 
K 5 HOH A 63 563 563 HOH HOH . 
K 5 HOH A 64 564 564 HOH HOH . 
K 5 HOH A 65 565 565 HOH HOH . 
K 5 HOH A 66 566 566 HOH HOH . 
K 5 HOH A 67 567 567 HOH HOH . 
K 5 HOH A 68 568 568 HOH HOH . 
K 5 HOH A 69 569 569 HOH HOH . 
K 5 HOH A 70 570 570 HOH HOH . 
K 5 HOH A 71 571 571 HOH HOH . 
K 5 HOH A 72 572 572 HOH HOH . 
K 5 HOH A 73 573 573 HOH HOH . 
K 5 HOH A 74 574 574 HOH HOH . 
K 5 HOH A 75 575 575 HOH HOH . 
K 5 HOH A 76 576 576 HOH HOH . 
K 5 HOH A 77 577 577 HOH HOH . 
K 5 HOH A 78 578 578 HOH HOH . 
K 5 HOH A 79 579 579 HOH HOH . 
K 5 HOH A 80 580 580 HOH HOH . 
K 5 HOH A 81 581 581 HOH HOH . 
K 5 HOH A 82 582 582 HOH HOH . 
K 5 HOH A 83 583 583 HOH HOH . 
K 5 HOH A 84 584 584 HOH HOH . 
K 5 HOH A 85 585 585 HOH HOH . 
K 5 HOH A 86 586 586 HOH HOH . 
K 5 HOH A 87 587 587 HOH HOH . 
K 5 HOH A 88 588 588 HOH HOH . 
K 5 HOH A 89 589 589 HOH HOH . 
K 5 HOH A 90 590 590 HOH HOH . 
K 5 HOH A 91 591 591 HOH HOH . 
K 5 HOH A 92 592 592 HOH HOH . 
K 5 HOH A 93 593 593 HOH HOH . 
K 5 HOH A 94 594 594 HOH HOH . 
K 5 HOH A 95 595 595 HOH HOH . 
K 5 HOH A 96 596 596 HOH HOH . 
K 5 HOH A 97 597 597 HOH HOH . 
K 5 HOH A 98 598 598 HOH HOH . 
K 5 HOH A 99 599 599 HOH HOH . 
K 5 HOH A 100 600 600 HOH HOH . 
K 5 HOH A 101 601 601 HOH HOH . 
K 5 HOH A 102 602 602 HOH HOH . 
K 5 HOH A 103 603 603 HOH HOH . 
K 5 HOH A 104 604 604 HOH HOH . 
K 5 HOH A 105 605 605 HOH HOH . 
K 5 HOH A 106 606 606 HOH HOH . 
K 5 HOH A 107 607 607 HOH HOH . 
K 5 HOH A 108 608 608 HOH HOH . 
K 5 HOH A 109 609 609 HOH HOH . 
K 5 HOH A 110 610 610 HOH HOH . 
K 5 HOH A 111 611 611 HOH HOH . 
K 5 HOH A 112 612 612 HOH HOH . 
K 5 HOH A 113 613 613 HOH HOH . 
K 5 HOH A 114 614 614 HOH HOH . 
K 5 HOH A 115 615 615 HOH HOH . 
K 5 HOH A 116 616 616 HOH HOH . 
K 5 HOH A 117 617 617 HOH HOH . 
K 5 HOH A 118 618 618 HOH HOH . 
K 5 HOH A 119 619 619 HOH HOH . 
K 5 HOH A 120 620 620 HOH HOH . 
K 5 HOH A 121 621 621 HOH HOH . 
K 5 HOH A 122 622 622 HOH HOH . 
K 5 HOH A 123 623 623 HOH HOH . 
K 5 HOH A 124 624 624 HOH HOH . 
K 5 HOH A 125 625 625 HOH HOH . 
K 5 HOH A 126 626 626 HOH HOH . 
K 5 HOH A 127 627 627 HOH HOH . 
K 5 HOH A 128 628 628 HOH HOH . 
K 5 HOH A 129 629 629 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . C 3 281.382 39.934 -8.002 1 142.54 ? PG ATP 1001 A 1 
HETATM 2 O O1G ATP . . . C 3 280.193 40.759 -8.709 1 142.45 ? O1G ATP 1001 A 1 
HETATM 3 O O2G ATP . . . C 3 281.131 38.389 -8.384 1 142.12 ? O2G ATP 1001 A 1 
HETATM 4 O O3G ATP . . . C 3 281.41 40.144 -6.537 1 143 ? O3G ATP 1001 A 1 
HETATM 5 P PB ATP . . . C 3 283.374 41.838 -8.573 1 139.47 ? PB ATP 1001 A 1 
HETATM 6 O O1B ATP . . . C 3 282.512 42.794 -9.541 1 138.83 ? O1B ATP 1001 A 1 
HETATM 7 O O2B ATP . . . C 3 283.388 42.311 -7.173 1 139.45 ? O2B ATP 1001 A 1 
HETATM 8 O O3B ATP . . . C 3 282.748 40.361 -8.742 1 141.01 ? O3B ATP 1001 A 1 
HETATM 9 P PA ATP . . . C 3 286.177 41.594 -8.356 1 134.4 ? PA ATP 1001 A 1 
HETATM 10 O O1A ATP . . . C 3 287.179 40.697 -9.243 1 133.9 ? O1A ATP 1001 A 1 
HETATM 11 O O2A ATP . . . C 3 285.916 40.977 -7.036 1 133.83 ? O2A ATP 1001 A 1 
HETATM 12 O O3A ATP . . . C 3 284.841 41.761 -9.24 1 137.16 ? O3A ATP 1001 A 1 
HETATM 13 O O5' ATP . . . C 3 286.841 43.058 -8.256 1 132.14 ? O5' ATP 1001 A 1 
HETATM 14 C C5' ATP . . . C 3 286.597 44.043 -9.268 1 128.05 ? C5' ATP 1001 A 1 
HETATM 15 C C4' ATP . . . C 3 286.746 45.438 -8.693 1 124.81 ? C4' ATP 1001 A 1 
HETATM 16 O O4' ATP . . . C 3 288.063 45.571 -8.1 1 123.67 ? O4' ATP 1001 A 1 
HETATM 17 C C3' ATP . . . C 3 286.671 46.587 -9.689 1 123.41 ? C3' ATP 1001 A 1 
HETATM 18 O O3' ATP . . . C 3 285.319 46.951 -9.955 1 122.15 ? O3' ATP 1001 A 1 
HETATM 19 C C2' ATP . . . C 3 287.423 47.698 -8.96 1 122.7 ? C2' ATP 1001 A 1 
HETATM 20 O O2' ATP . . . C 3 286.626 48.379 -8.01 1 122.03 ? O2' ATP 1001 A 1 
HETATM 21 C C1' ATP . . . C 3 288.516 46.907 -8.231 1 122.71 ? C1' ATP 1001 A 1 
HETATM 22 N N9 ATP . . . C 3 289.827 46.89 -8.888 1 122.11 ? N9 ATP 1001 A 1 
HETATM 23 C C8 ATP . . . C 3 290.114 46.706 -10.221 1 121.75 ? C8 ATP 1001 A 1 
HETATM 24 N N7 ATP . . . C 3 291.397 46.743 -10.496 1 122.04 ? N7 ATP 1001 A 1 
HETATM 25 C C5 ATP . . . C 3 291.998 46.966 -9.262 1 122.29 ? C5 ATP 1001 A 1 
HETATM 26 C C6 ATP . . . C 3 293.351 47.11 -8.872 1 122.51 ? C6 ATP 1001 A 1 
HETATM 27 N N6 ATP . . . C 3 294.38 47.048 -9.722 1 123.12 ? N6 ATP 1001 A 1 
HETATM 28 N N1 ATP . . . C 3 293.609 47.323 -7.561 1 121.94 ? N1 ATP 1001 A 1 
HETATM 29 C C2 ATP . . . C 3 292.579 47.389 -6.709 1 121.61 ? C2 ATP 1001 A 1 
HETATM 30 N N3 ATP . . . C 3 291.271 47.273 -6.952 1 121.92 ? N3 ATP 1001 A 1 
HETATM 31 C C4 ATP . . . C 3 291.044 47.061 -8.263 1 122.04 ? C4 ATP 1001 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           31 
#