data_2IM1 # _model_server_result.job_id jYtfYxhNsVRK45R5KVKl8A _model_server_result.datetime_utc '2024-12-11 06:30:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2im1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 2IM1 # _exptl.entry_id 2IM1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2IM1 _cell.length_a 128.942 _cell.length_b 128.942 _cell.length_c 112.979 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IM1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 95 A MET 95 1_555 A N CAS 96 A CAS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C CAS 96 A CAS 96 1_555 A N LEU 97 A LEU 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C GLY 211 A GLY 211 1_555 A N CAS 212 A CAS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 A C CAS 212 A CAS 212 1_555 A N ASP 213 A ASP 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C TYR 280 A TYR 280 1_555 A N CAS 281 A CAS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C CAS 281 A CAS 281 1_555 A N VAL 282 A VAL 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C GLY 289 A GLY 289 1_555 A N CAS 290 A CAS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C CAS 290 A CAS 290 1_555 A N SER 291 A SER 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A NZ LYS 167 A LYS 167 1_555 D MN MN . A MN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc2 A O LEU 268 A LEU 268 1_555 E NA NA . A NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc3 A OG SER 271 A SER 271 1_555 E NA NA . A NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc4 A O GLY 284 A GLY 284 1_555 E NA NA . A NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc5 A O GLY 285 A GLY 285 1_555 E NA NA . A NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc6 F O2B CTP . A CTP 1001 1_555 C MN MN . A MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc7 F O1A CTP . A CTP 1001 1_555 D MN MN . A MN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc8 F O3B CTP . A CTP 1001 1_555 D MN MN . A MN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2IM1 _atom_sites.fract_transf_matrix[1][1] 0.007755 _atom_sites.fract_transf_matrix[1][2] 0.004478 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008851 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 2001 2001 MN MN . C 2 MN A 1 2002 2002 MN MN . D 2 MN A 1 2003 2003 MN MN . E 3 NA A 1 3001 3001 NA NA . F 4 CTP A 1 1001 1001 CTP CTP . G 5 ACY A 1 901 901 ACY ACY . H 5 ACY A 1 902 902 ACY ACY . I 5 ACY A 1 903 903 ACY ACY . J 5 ACY A 1 904 904 ACY ACY . K 5 ACY A 1 905 905 ACY ACY . L 6 HOH A 1 501 501 HOH HOH . L 6 HOH A 2 502 502 HOH HOH . L 6 HOH A 3 503 503 HOH HOH . L 6 HOH A 4 504 504 HOH HOH . L 6 HOH A 5 505 505 HOH HOH . L 6 HOH A 6 506 506 HOH HOH . L 6 HOH A 7 507 507 HOH HOH . L 6 HOH A 8 508 508 HOH HOH . L 6 HOH A 9 509 509 HOH HOH . L 6 HOH A 10 510 510 HOH HOH . L 6 HOH A 11 511 511 HOH HOH . L 6 HOH A 12 512 512 HOH HOH . L 6 HOH A 13 513 513 HOH HOH . L 6 HOH A 14 514 514 HOH HOH . L 6 HOH A 15 515 515 HOH HOH . L 6 HOH A 16 516 516 HOH HOH . L 6 HOH A 17 517 517 HOH HOH . L 6 HOH A 18 518 518 HOH HOH . L 6 HOH A 19 519 519 HOH HOH . L 6 HOH A 20 520 520 HOH HOH . L 6 HOH A 21 521 521 HOH HOH . L 6 HOH A 22 522 522 HOH HOH . L 6 HOH A 23 523 523 HOH HOH . L 6 HOH A 24 524 524 HOH HOH . L 6 HOH A 25 525 525 HOH HOH . L 6 HOH A 26 526 526 HOH HOH . L 6 HOH A 27 527 527 HOH HOH . L 6 HOH A 28 528 528 HOH HOH . L 6 HOH A 29 529 529 HOH HOH . L 6 HOH A 30 530 530 HOH HOH . L 6 HOH A 31 531 531 HOH HOH . L 6 HOH A 32 532 532 HOH HOH . L 6 HOH A 33 533 533 HOH HOH . L 6 HOH A 34 534 534 HOH HOH . L 6 HOH A 35 535 535 HOH HOH . L 6 HOH A 36 536 536 HOH HOH . L 6 HOH A 37 537 537 HOH HOH . L 6 HOH A 38 538 538 HOH HOH . L 6 HOH A 39 539 539 HOH HOH . L 6 HOH A 40 540 540 HOH HOH . L 6 HOH A 41 541 541 HOH HOH . L 6 HOH A 42 542 542 HOH HOH . L 6 HOH A 43 543 543 HOH HOH . L 6 HOH A 44 544 544 HOH HOH . L 6 HOH A 45 545 545 HOH HOH . L 6 HOH A 46 546 546 HOH HOH . L 6 HOH A 47 547 547 HOH HOH . L 6 HOH A 48 548 548 HOH HOH . L 6 HOH A 49 549 549 HOH HOH . L 6 HOH A 50 550 550 HOH HOH . L 6 HOH A 51 551 551 HOH HOH . L 6 HOH A 52 552 552 HOH HOH . L 6 HOH A 53 553 553 HOH HOH . L 6 HOH A 54 554 554 HOH HOH . L 6 HOH A 55 555 555 HOH HOH . L 6 HOH A 56 556 556 HOH HOH . L 6 HOH A 57 557 557 HOH HOH . L 6 HOH A 58 558 558 HOH HOH . L 6 HOH A 59 559 559 HOH HOH . L 6 HOH A 60 560 560 HOH HOH . L 6 HOH A 61 561 561 HOH HOH . L 6 HOH A 62 562 562 HOH HOH . L 6 HOH A 63 563 563 HOH HOH . L 6 HOH A 64 564 564 HOH HOH . L 6 HOH A 65 565 565 HOH HOH . L 6 HOH A 66 566 566 HOH HOH . L 6 HOH A 67 567 567 HOH HOH . L 6 HOH A 68 568 568 HOH HOH . L 6 HOH A 69 569 569 HOH HOH . L 6 HOH A 70 570 570 HOH HOH . L 6 HOH A 71 571 571 HOH HOH . L 6 HOH A 72 572 572 HOH HOH . L 6 HOH A 73 573 573 HOH HOH . L 6 HOH A 74 574 574 HOH HOH . L 6 HOH A 75 575 575 HOH HOH . L 6 HOH A 76 576 576 HOH HOH . L 6 HOH A 77 577 577 HOH HOH . L 6 HOH A 78 578 578 HOH HOH . L 6 HOH A 79 579 579 HOH HOH . L 6 HOH A 80 580 580 HOH HOH . L 6 HOH A 81 581 581 HOH HOH . L 6 HOH A 82 582 582 HOH HOH . L 6 HOH A 83 583 583 HOH HOH . L 6 HOH A 84 584 584 HOH HOH . L 6 HOH A 85 585 585 HOH HOH . L 6 HOH A 86 586 586 HOH HOH . L 6 HOH A 87 587 587 HOH HOH . L 6 HOH A 88 588 588 HOH HOH . L 6 HOH A 89 589 589 HOH HOH . L 6 HOH A 90 590 590 HOH HOH . L 6 HOH A 91 591 591 HOH HOH . L 6 HOH A 92 592 592 HOH HOH . L 6 HOH A 93 593 593 HOH HOH . L 6 HOH A 94 594 594 HOH HOH . L 6 HOH A 95 595 595 HOH HOH . L 6 HOH A 96 596 596 HOH HOH . L 6 HOH A 97 597 597 HOH HOH . L 6 HOH A 98 598 598 HOH HOH . L 6 HOH A 99 599 599 HOH HOH . L 6 HOH A 100 600 600 HOH HOH . L 6 HOH A 101 601 601 HOH HOH . L 6 HOH A 102 602 602 HOH HOH . L 6 HOH A 103 603 603 HOH HOH . L 6 HOH A 104 604 604 HOH HOH . L 6 HOH A 105 605 605 HOH HOH . L 6 HOH A 106 606 606 HOH HOH . L 6 HOH A 107 607 607 HOH HOH . L 6 HOH A 108 608 608 HOH HOH . L 6 HOH A 109 609 609 HOH HOH . L 6 HOH A 110 610 610 HOH HOH . L 6 HOH A 111 611 611 HOH HOH . L 6 HOH A 112 612 612 HOH HOH . L 6 HOH A 113 613 613 HOH HOH . L 6 HOH A 114 614 614 HOH HOH . L 6 HOH A 115 615 615 HOH HOH . L 6 HOH A 116 616 616 HOH HOH . L 6 HOH A 117 617 617 HOH HOH . L 6 HOH A 118 618 618 HOH HOH . L 6 HOH A 119 619 619 HOH HOH . L 6 HOH A 120 620 620 HOH HOH . L 6 HOH A 121 621 621 HOH HOH . L 6 HOH A 122 622 622 HOH HOH . L 6 HOH A 123 623 623 HOH HOH . L 6 HOH A 124 624 624 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 219.386 _atom_site.Cartn_y -65.944 _atom_site.Cartn_z 2.594 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 113.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 2001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #