data_2IM1
#
_model_server_result.job_id            R7J9WKt93iS1SNoPrZk0pA 
_model_server_result.datetime_utc      '2024-11-09 02:06:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2im1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2003}' 
#
_entry.id    2IM1 
#
_exptl.entry_id    2IM1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2IM1 
_cell.length_a            128.942 
_cell.length_b            128.942 
_cell.length_c            112.979 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2IM1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MET 95 A MET 95 1_555 A N CAS 96 A CAS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C CAS 96 A CAS 96 1_555 A N LEU 97 A LEU 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C GLY 211 A GLY 211 1_555 A N CAS 212 A CAS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale4 A C CAS 212 A CAS 212 1_555 A N ASP 213 A ASP 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale5 A C TYR 280 A TYR 280 1_555 A N CAS 281 A CAS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale6 A C CAS 281 A CAS 281 1_555 A N VAL 282 A VAL 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale7 A C GLY 289 A GLY 289 1_555 A N CAS 290 A CAS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 A C CAS 290 A CAS 290 1_555 A N SER 291 A SER 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
metalc ? metalc1 A NZ LYS 167 A LYS 167 1_555 D MN MN . A MN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc2 A O LEU 268 A LEU 268 1_555 E NA NA . A NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? 
metalc ? metalc3 A OG SER 271 A SER 271 1_555 E NA NA . A NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
metalc ? metalc4 A O GLY 284 A GLY 284 1_555 E NA NA . A NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? 
metalc ? metalc5 A O GLY 285 A GLY 285 1_555 E NA NA . A NA 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
metalc ? metalc6 F O2B CTP . A CTP 1001 1_555 C MN MN . A MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc7 F O1A CTP . A CTP 1001 1_555 D MN MN . A MN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? 
metalc ? metalc8 F O3B CTP . A CTP 1001 1_555 D MN MN . A MN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2IM1 
_atom_sites.fract_transf_matrix[1][1]    0.007755 
_atom_sites.fract_transf_matrix[1][2]    0.004478 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008955 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008851 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 2001 2001 MN MN . 
C 2 MN A 1 2002 2002 MN MN . 
D 2 MN A 1 2003 2003 MN MN . 
E 3 NA A 1 3001 3001 NA NA . 
F 4 CTP A 1 1001 1001 CTP CTP . 
G 5 ACY A 1 901 901 ACY ACY . 
H 5 ACY A 1 902 902 ACY ACY . 
I 5 ACY A 1 903 903 ACY ACY . 
J 5 ACY A 1 904 904 ACY ACY . 
K 5 ACY A 1 905 905 ACY ACY . 
L 6 HOH A 1 501 501 HOH HOH . 
L 6 HOH A 2 502 502 HOH HOH . 
L 6 HOH A 3 503 503 HOH HOH . 
L 6 HOH A 4 504 504 HOH HOH . 
L 6 HOH A 5 505 505 HOH HOH . 
L 6 HOH A 6 506 506 HOH HOH . 
L 6 HOH A 7 507 507 HOH HOH . 
L 6 HOH A 8 508 508 HOH HOH . 
L 6 HOH A 9 509 509 HOH HOH . 
L 6 HOH A 10 510 510 HOH HOH . 
L 6 HOH A 11 511 511 HOH HOH . 
L 6 HOH A 12 512 512 HOH HOH . 
L 6 HOH A 13 513 513 HOH HOH . 
L 6 HOH A 14 514 514 HOH HOH . 
L 6 HOH A 15 515 515 HOH HOH . 
L 6 HOH A 16 516 516 HOH HOH . 
L 6 HOH A 17 517 517 HOH HOH . 
L 6 HOH A 18 518 518 HOH HOH . 
L 6 HOH A 19 519 519 HOH HOH . 
L 6 HOH A 20 520 520 HOH HOH . 
L 6 HOH A 21 521 521 HOH HOH . 
L 6 HOH A 22 522 522 HOH HOH . 
L 6 HOH A 23 523 523 HOH HOH . 
L 6 HOH A 24 524 524 HOH HOH . 
L 6 HOH A 25 525 525 HOH HOH . 
L 6 HOH A 26 526 526 HOH HOH . 
L 6 HOH A 27 527 527 HOH HOH . 
L 6 HOH A 28 528 528 HOH HOH . 
L 6 HOH A 29 529 529 HOH HOH . 
L 6 HOH A 30 530 530 HOH HOH . 
L 6 HOH A 31 531 531 HOH HOH . 
L 6 HOH A 32 532 532 HOH HOH . 
L 6 HOH A 33 533 533 HOH HOH . 
L 6 HOH A 34 534 534 HOH HOH . 
L 6 HOH A 35 535 535 HOH HOH . 
L 6 HOH A 36 536 536 HOH HOH . 
L 6 HOH A 37 537 537 HOH HOH . 
L 6 HOH A 38 538 538 HOH HOH . 
L 6 HOH A 39 539 539 HOH HOH . 
L 6 HOH A 40 540 540 HOH HOH . 
L 6 HOH A 41 541 541 HOH HOH . 
L 6 HOH A 42 542 542 HOH HOH . 
L 6 HOH A 43 543 543 HOH HOH . 
L 6 HOH A 44 544 544 HOH HOH . 
L 6 HOH A 45 545 545 HOH HOH . 
L 6 HOH A 46 546 546 HOH HOH . 
L 6 HOH A 47 547 547 HOH HOH . 
L 6 HOH A 48 548 548 HOH HOH . 
L 6 HOH A 49 549 549 HOH HOH . 
L 6 HOH A 50 550 550 HOH HOH . 
L 6 HOH A 51 551 551 HOH HOH . 
L 6 HOH A 52 552 552 HOH HOH . 
L 6 HOH A 53 553 553 HOH HOH . 
L 6 HOH A 54 554 554 HOH HOH . 
L 6 HOH A 55 555 555 HOH HOH . 
L 6 HOH A 56 556 556 HOH HOH . 
L 6 HOH A 57 557 557 HOH HOH . 
L 6 HOH A 58 558 558 HOH HOH . 
L 6 HOH A 59 559 559 HOH HOH . 
L 6 HOH A 60 560 560 HOH HOH . 
L 6 HOH A 61 561 561 HOH HOH . 
L 6 HOH A 62 562 562 HOH HOH . 
L 6 HOH A 63 563 563 HOH HOH . 
L 6 HOH A 64 564 564 HOH HOH . 
L 6 HOH A 65 565 565 HOH HOH . 
L 6 HOH A 66 566 566 HOH HOH . 
L 6 HOH A 67 567 567 HOH HOH . 
L 6 HOH A 68 568 568 HOH HOH . 
L 6 HOH A 69 569 569 HOH HOH . 
L 6 HOH A 70 570 570 HOH HOH . 
L 6 HOH A 71 571 571 HOH HOH . 
L 6 HOH A 72 572 572 HOH HOH . 
L 6 HOH A 73 573 573 HOH HOH . 
L 6 HOH A 74 574 574 HOH HOH . 
L 6 HOH A 75 575 575 HOH HOH . 
L 6 HOH A 76 576 576 HOH HOH . 
L 6 HOH A 77 577 577 HOH HOH . 
L 6 HOH A 78 578 578 HOH HOH . 
L 6 HOH A 79 579 579 HOH HOH . 
L 6 HOH A 80 580 580 HOH HOH . 
L 6 HOH A 81 581 581 HOH HOH . 
L 6 HOH A 82 582 582 HOH HOH . 
L 6 HOH A 83 583 583 HOH HOH . 
L 6 HOH A 84 584 584 HOH HOH . 
L 6 HOH A 85 585 585 HOH HOH . 
L 6 HOH A 86 586 586 HOH HOH . 
L 6 HOH A 87 587 587 HOH HOH . 
L 6 HOH A 88 588 588 HOH HOH . 
L 6 HOH A 89 589 589 HOH HOH . 
L 6 HOH A 90 590 590 HOH HOH . 
L 6 HOH A 91 591 591 HOH HOH . 
L 6 HOH A 92 592 592 HOH HOH . 
L 6 HOH A 93 593 593 HOH HOH . 
L 6 HOH A 94 594 594 HOH HOH . 
L 6 HOH A 95 595 595 HOH HOH . 
L 6 HOH A 96 596 596 HOH HOH . 
L 6 HOH A 97 597 597 HOH HOH . 
L 6 HOH A 98 598 598 HOH HOH . 
L 6 HOH A 99 599 599 HOH HOH . 
L 6 HOH A 100 600 600 HOH HOH . 
L 6 HOH A 101 601 601 HOH HOH . 
L 6 HOH A 102 602 602 HOH HOH . 
L 6 HOH A 103 603 603 HOH HOH . 
L 6 HOH A 104 604 604 HOH HOH . 
L 6 HOH A 105 605 605 HOH HOH . 
L 6 HOH A 106 606 606 HOH HOH . 
L 6 HOH A 107 607 607 HOH HOH . 
L 6 HOH A 108 608 608 HOH HOH . 
L 6 HOH A 109 609 609 HOH HOH . 
L 6 HOH A 110 610 610 HOH HOH . 
L 6 HOH A 111 611 611 HOH HOH . 
L 6 HOH A 112 612 612 HOH HOH . 
L 6 HOH A 113 613 613 HOH HOH . 
L 6 HOH A 114 614 614 HOH HOH . 
L 6 HOH A 115 615 615 HOH HOH . 
L 6 HOH A 116 616 616 HOH HOH . 
L 6 HOH A 117 617 617 HOH HOH . 
L 6 HOH A 118 618 618 HOH HOH . 
L 6 HOH A 119 619 619 HOH HOH . 
L 6 HOH A 120 620 620 HOH HOH . 
L 6 HOH A 121 621 621 HOH HOH . 
L 6 HOH A 122 622 622 HOH HOH . 
L 6 HOH A 123 623 623 HOH HOH . 
L 6 HOH A 124 624 624 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               220.707 
_atom_site.Cartn_y               -72.025 
_atom_site.Cartn_z               -0.194 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        108.92 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           2003 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#