data_2IMD # _model_server_result.job_id C3TFLcCyFo6F6M09XkhYrA _model_server_result.datetime_utc '2025-02-28 02:37:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2imd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2IMD # _exptl.entry_id 2IMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IMD _cell.length_a 71.336 _cell.length_b 76.051 _cell.length_c 38.366 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 71.336 76.051 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N ILE 2 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 A C ARG 88 A ARG 88 1_555 A N MSE 89 A MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale3 A C MSE 89 A MSE 89 1_555 A N ASN 90 A ASN 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 A C THR 170 A THR 170 1_555 A N MSE 171 A MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 A C MSE 171 A MSE 171 1_555 A N PHE 172 A PHE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale6 A C GLU 176 A GLU 176 1_555 A N MSE 177 A MSE 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 A C MSE 177 A MSE 177 1_555 A N TRP 178 A TRP 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale8 A C PHE 185 A PHE 185 1_555 A N MSE 186 A MSE 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale9 A C MSE 186 A MSE 186 1_555 A N LEU 187 A LEU 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale10 A C ALA 190 A ALA 190 1_555 A N MSE 191 A MSE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale11 A C MSE 191 A MSE 191 1_555 A N GLY 192 A GLY 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2IMD _atom_sites.fract_transf_matrix[1][1] 0.014018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 306 306 PO4 PO4 . C 2 PO4 A 1 308 308 PO4 PO4 . D 3 GSH A 1 301 301 GSH GSH . E 4 TOH A 1 304 304 TOH TOH . F 5 2C2 A 1 305 305 2C2 2C2 . G 6 CXS A 1 312 312 CXS CXS . H 7 HOH A 1 401 401 HOH HOH . H 7 HOH A 2 402 402 HOH HOH . H 7 HOH A 3 403 403 HOH HOH . H 7 HOH A 4 404 404 HOH HOH . H 7 HOH A 5 405 405 HOH HOH . H 7 HOH A 6 406 406 HOH HOH . H 7 HOH A 7 407 407 HOH HOH . H 7 HOH A 8 408 408 HOH HOH . H 7 HOH A 9 409 409 HOH HOH . H 7 HOH A 10 410 410 HOH HOH . H 7 HOH A 11 411 411 HOH HOH . H 7 HOH A 12 412 412 HOH HOH . H 7 HOH A 13 413 413 HOH HOH . H 7 HOH A 14 414 414 HOH HOH . H 7 HOH A 15 415 415 HOH HOH . H 7 HOH A 16 416 416 HOH HOH . H 7 HOH A 17 417 417 HOH HOH . H 7 HOH A 18 418 418 HOH HOH . H 7 HOH A 19 419 419 HOH HOH . H 7 HOH A 20 420 420 HOH HOH . H 7 HOH A 21 421 421 HOH HOH . H 7 HOH A 22 422 422 HOH HOH . H 7 HOH A 23 423 423 HOH HOH . H 7 HOH A 24 424 424 HOH HOH . H 7 HOH A 25 425 425 HOH HOH . H 7 HOH A 26 426 426 HOH HOH . H 7 HOH A 27 427 427 HOH HOH . H 7 HOH A 28 428 428 HOH HOH . H 7 HOH A 29 429 429 HOH HOH . H 7 HOH A 30 430 430 HOH HOH . H 7 HOH A 31 431 431 HOH HOH . H 7 HOH A 32 432 432 HOH HOH . H 7 HOH A 33 433 433 HOH HOH . H 7 HOH A 34 434 434 HOH HOH . H 7 HOH A 35 435 435 HOH HOH . H 7 HOH A 36 436 436 HOH HOH . H 7 HOH A 37 437 437 HOH HOH . H 7 HOH A 38 438 438 HOH HOH . H 7 HOH A 39 439 439 HOH HOH . H 7 HOH A 40 440 440 HOH HOH . H 7 HOH A 41 441 441 HOH HOH . H 7 HOH A 42 442 442 HOH HOH . H 7 HOH A 43 443 443 HOH HOH . H 7 HOH A 44 444 444 HOH HOH . H 7 HOH A 45 445 445 HOH HOH . H 7 HOH A 46 446 446 HOH HOH . H 7 HOH A 47 447 447 HOH HOH . H 7 HOH A 48 448 448 HOH HOH . H 7 HOH A 49 449 449 HOH HOH . H 7 HOH A 50 450 450 HOH HOH . H 7 HOH A 51 451 451 HOH HOH . H 7 HOH A 52 452 452 HOH HOH . H 7 HOH A 53 453 453 HOH HOH . H 7 HOH A 54 454 454 HOH HOH . H 7 HOH A 55 455 455 HOH HOH . H 7 HOH A 56 456 456 HOH HOH . H 7 HOH A 57 457 457 HOH HOH . H 7 HOH A 58 458 458 HOH HOH . H 7 HOH A 59 459 459 HOH HOH . H 7 HOH A 60 460 460 HOH HOH . H 7 HOH A 61 461 461 HOH HOH . H 7 HOH A 62 462 462 HOH HOH . H 7 HOH A 63 463 463 HOH HOH . H 7 HOH A 64 464 464 HOH HOH . H 7 HOH A 65 465 465 HOH HOH . H 7 HOH A 66 466 466 HOH HOH . H 7 HOH A 67 467 467 HOH HOH . H 7 HOH A 68 468 468 HOH HOH . H 7 HOH A 69 469 469 HOH HOH . H 7 HOH A 70 470 470 HOH HOH . H 7 HOH A 71 471 471 HOH HOH . H 7 HOH A 72 472 472 HOH HOH . H 7 HOH A 73 473 473 HOH HOH . H 7 HOH A 74 474 474 HOH HOH . H 7 HOH A 75 475 475 HOH HOH . H 7 HOH A 76 476 476 HOH HOH . H 7 HOH A 77 477 477 HOH HOH . H 7 HOH A 78 478 478 HOH HOH . H 7 HOH A 79 479 479 HOH HOH . H 7 HOH A 80 480 480 HOH HOH . H 7 HOH A 81 481 481 HOH HOH . H 7 HOH A 82 482 482 HOH HOH . H 7 HOH A 83 483 483 HOH HOH . H 7 HOH A 84 484 484 HOH HOH . H 7 HOH A 85 485 485 HOH HOH . H 7 HOH A 86 486 486 HOH HOH . H 7 HOH A 87 487 487 HOH HOH . H 7 HOH A 88 488 488 HOH HOH . H 7 HOH A 89 489 489 HOH HOH . H 7 HOH A 90 490 490 HOH HOH . H 7 HOH A 91 491 491 HOH HOH . H 7 HOH A 92 492 492 HOH HOH . H 7 HOH A 93 493 493 HOH HOH . H 7 HOH A 94 494 494 HOH HOH . H 7 HOH A 95 495 495 HOH HOH . H 7 HOH A 96 496 496 HOH HOH . H 7 HOH A 97 497 497 HOH HOH . H 7 HOH A 98 498 498 HOH HOH . H 7 HOH A 99 499 499 HOH HOH . H 7 HOH A 100 500 500 HOH HOH . H 7 HOH A 101 501 501 HOH HOH . H 7 HOH A 102 502 502 HOH HOH . H 7 HOH A 103 503 503 HOH HOH . H 7 HOH A 104 504 504 HOH HOH . H 7 HOH A 105 505 505 HOH HOH . H 7 HOH A 106 506 506 HOH HOH . H 7 HOH A 107 507 507 HOH HOH . H 7 HOH A 108 508 508 HOH HOH . H 7 HOH A 109 509 509 HOH HOH . H 7 HOH A 110 510 510 HOH HOH . H 7 HOH A 111 511 511 HOH HOH . H 7 HOH A 112 512 512 HOH HOH . H 7 HOH A 113 513 513 HOH HOH . H 7 HOH A 114 514 514 HOH HOH . H 7 HOH A 115 515 515 HOH HOH . H 7 HOH A 116 516 516 HOH HOH . H 7 HOH A 117 517 517 HOH HOH . H 7 HOH A 118 518 518 HOH HOH . H 7 HOH A 119 519 519 HOH HOH . H 7 HOH A 120 520 520 HOH HOH . H 7 HOH A 121 521 521 HOH HOH . H 7 HOH A 122 522 522 HOH HOH . H 7 HOH A 123 523 523 HOH HOH . H 7 HOH A 124 524 524 HOH HOH . H 7 HOH A 125 525 525 HOH HOH . H 7 HOH A 126 526 526 HOH HOH . H 7 HOH A 127 527 527 HOH HOH . H 7 HOH A 128 528 528 HOH HOH . H 7 HOH A 129 529 529 HOH HOH . H 7 HOH A 130 530 530 HOH HOH . H 7 HOH A 131 531 531 HOH HOH . H 7 HOH A 132 532 532 HOH HOH . H 7 HOH A 133 533 533 HOH HOH . H 7 HOH A 134 534 534 HOH HOH . H 7 HOH A 135 535 535 HOH HOH . H 7 HOH A 136 536 536 HOH HOH . H 7 HOH A 137 537 537 HOH HOH . H 7 HOH A 138 538 538 HOH HOH . H 7 HOH A 139 539 539 HOH HOH . H 7 HOH A 140 540 540 HOH HOH . H 7 HOH A 141 541 541 HOH HOH . H 7 HOH A 142 542 542 HOH HOH . H 7 HOH A 143 543 543 HOH HOH . H 7 HOH A 144 544 544 HOH HOH . H 7 HOH A 145 545 545 HOH HOH . H 7 HOH A 146 546 546 HOH HOH . H 7 HOH A 147 547 547 HOH HOH . H 7 HOH A 148 548 548 HOH HOH . H 7 HOH A 149 549 549 HOH HOH . H 7 HOH A 150 550 550 HOH HOH . H 7 HOH A 151 551 551 HOH HOH . H 7 HOH A 152 552 552 HOH HOH . H 7 HOH A 153 553 553 HOH HOH . H 7 HOH A 154 554 554 HOH HOH . H 7 HOH A 155 555 555 HOH HOH . H 7 HOH A 156 556 556 HOH HOH . H 7 HOH A 157 557 557 HOH HOH . H 7 HOH A 158 558 558 HOH HOH . H 7 HOH A 159 559 559 HOH HOH . H 7 HOH A 160 560 560 HOH HOH . H 7 HOH A 161 561 561 HOH HOH . H 7 HOH A 162 562 562 HOH HOH . H 7 HOH A 163 563 563 HOH HOH . H 7 HOH A 164 564 564 HOH HOH . H 7 HOH A 165 565 565 HOH HOH . H 7 HOH A 166 566 566 HOH HOH . H 7 HOH A 167 567 567 HOH HOH . H 7 HOH A 168 568 568 HOH HOH . H 7 HOH A 169 569 569 HOH HOH . H 7 HOH A 170 570 570 HOH HOH . H 7 HOH A 171 571 571 HOH HOH . H 7 HOH A 172 572 572 HOH HOH . H 7 HOH A 173 573 573 HOH HOH . H 7 HOH A 174 574 574 HOH HOH . H 7 HOH A 175 575 575 HOH HOH . H 7 HOH A 176 576 576 HOH HOH . H 7 HOH A 177 577 577 HOH HOH . H 7 HOH A 178 578 578 HOH HOH . H 7 HOH A 179 579 579 HOH HOH . H 7 HOH A 180 580 580 HOH HOH . H 7 HOH A 181 581 581 HOH HOH . H 7 HOH A 182 582 582 HOH HOH . H 7 HOH A 183 583 583 HOH HOH . H 7 HOH A 184 584 584 HOH HOH . H 7 HOH A 185 585 585 HOH HOH . H 7 HOH A 186 586 586 HOH HOH . H 7 HOH A 187 587 587 HOH HOH . H 7 HOH A 188 588 588 HOH HOH . H 7 HOH A 189 589 589 HOH HOH . H 7 HOH A 190 590 590 HOH HOH . H 7 HOH A 191 591 591 HOH HOH . H 7 HOH A 192 592 592 HOH HOH . H 7 HOH A 193 593 593 HOH HOH . H 7 HOH A 194 594 594 HOH HOH . H 7 HOH A 195 595 595 HOH HOH . H 7 HOH A 196 596 596 HOH HOH . H 7 HOH A 197 597 597 HOH HOH . H 7 HOH A 198 598 598 HOH HOH . H 7 HOH A 199 599 599 HOH HOH . H 7 HOH A 200 600 600 HOH HOH . H 7 HOH A 201 601 601 HOH HOH . H 7 HOH A 202 602 602 HOH HOH . H 7 HOH A 203 603 603 HOH HOH . H 7 HOH A 204 604 604 HOH HOH . H 7 HOH A 205 605 605 HOH HOH . H 7 HOH A 206 606 606 HOH HOH . H 7 HOH A 207 607 607 HOH HOH . H 7 HOH A 208 608 608 HOH HOH . H 7 HOH A 209 609 609 HOH HOH . H 7 HOH A 210 610 610 HOH HOH . H 7 HOH A 211 611 611 HOH HOH . H 7 HOH A 212 612 612 HOH HOH . H 7 HOH A 213 613 613 HOH HOH . H 7 HOH A 214 614 614 HOH HOH . H 7 HOH A 215 615 615 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . D 3 33.403 38.1 36.929 1 13.66 ? N1 GSH 301 A 1 HETATM 2 C CA1 GSH . . . D 3 32.112 38.741 36.751 1 13.28 ? CA1 GSH 301 A 1 HETATM 3 C C1 GSH . . . D 3 31.118 38.764 37.813 1 14.46 ? C1 GSH 301 A 1 HETATM 4 O O11 GSH . . . D 3 30.058 39.496 37.765 1 15.38 ? O11 GSH 301 A 1 HETATM 5 O O12 GSH . . . D 3 31.31 37.849 38.612 1 15.8 ? O12 GSH 301 A 1 HETATM 6 C CB1 GSH . . . D 3 31.666 38.714 35.284 1 12.94 ? CB1 GSH 301 A 1 HETATM 7 C CG1 GSH . . . D 3 30.569 39.637 34.774 1 13.64 ? CG1 GSH 301 A 1 HETATM 8 C CD1 GSH . . . D 3 30.263 39.402 33.311 1 14.42 ? CD1 GSH 301 A 1 HETATM 9 O OE1 GSH . . . D 3 30.808 38.395 32.674 1 15.31 ? OE1 GSH 301 A 1 HETATM 10 N N2 GSH . . . D 3 29.423 40.241 32.672 1 12.98 ? N2 GSH 301 A 1 HETATM 11 C CA2 GSH . . . D 3 29.085 40.159 31.268 1 13.04 ? CA2 GSH 301 A 1 HETATM 12 C C2 GSH . . . D 3 29.798 41.254 30.533 1 14.45 ? C2 GSH 301 A 1 HETATM 13 O O2 GSH . . . D 3 29.759 42.549 31.026 1 14.52 ? O2 GSH 301 A 1 HETATM 14 C CB2 GSH . C . D 3 27.558 40.194 31.093 0.5 16.12 ? CB2 GSH 301 A 1 HETATM 15 C CB2 GSH . D . D 3 27.583 40.291 31.013 0.5 12.97 ? CB2 GSH 301 A 1 HETATM 16 S SG2 GSH . C . D 3 26.718 38.874 32.054 0.5 19.12 ? SG2 GSH 301 A 1 HETATM 17 S SG2 GSH . D . D 3 26.728 38.731 31.384 0.5 12.65 ? SG2 GSH 301 A 1 HETATM 18 N N3 GSH . . . D 3 30.467 40.951 29.419 1 16.16 ? N3 GSH 301 A 1 HETATM 19 C CA3 GSH . . . D 3 31.228 42.035 28.856 1 17.2 ? CA3 GSH 301 A 1 HETATM 20 C C3 GSH . . . D 3 32.704 41.672 28.863 1 20.74 ? C3 GSH 301 A 1 HETATM 21 O O31 GSH . . . D 3 33.506 42.58 28.502 1 20.33 ? O31 GSH 301 A 1 HETATM 22 O O32 GSH . . . D 3 33.119 40.514 29.174 1 20.81 ? O32 GSH 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #