data_2IMK # _model_server_result.job_id -k-sDE88GpGNbF4_OpbQLg _model_server_result.datetime_utc '2024-11-26 06:53:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2imk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 2IMK # _exptl.entry_id 2IMK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.491 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-HEXYLGLUTATHIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IMK _cell.length_a 49.512 _cell.length_b 85.481 _cell.length_c 93.265 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C16 H30 N3 O6 S 1' _chem_comp.formula_weight 392.491 _chem_comp.id GTX _chem_comp.mon_nstd_flag . _chem_comp.name S-HEXYLGLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GTX sing 129 n n N1 HN11 GTX sing 130 n n N1 HN12 GTX sing 131 n n N1 HN13 GTX sing 132 n n CA1 C1 GTX sing 133 n n CA1 CB1 GTX sing 134 n n CA1 HA1 GTX sing 135 n n C1 O11 GTX doub 136 n n C1 O12 GTX sing 137 n n O12 HO2 GTX sing 138 n n CB1 CG1 GTX sing 139 n n CB1 HB11 GTX sing 140 n n CB1 HB12 GTX sing 141 n n CG1 CD1 GTX sing 142 n n CG1 HG11 GTX sing 143 n n CG1 HG12 GTX sing 144 n n CD1 OE1 GTX doub 145 n n CD1 N2 GTX sing 146 n n N2 CA2 GTX sing 147 n n N2 HN2 GTX sing 148 n n CA2 C2 GTX sing 149 n n CA2 CB2 GTX sing 150 n n CA2 HA2 GTX sing 151 n n C2 O2 GTX doub 152 n n C2 N3 GTX sing 153 n n CB2 SG2 GTX sing 154 n n CB2 HB21 GTX sing 155 n n CB2 HB22 GTX sing 156 n n SG2 C1S GTX sing 157 n n C1S C2S GTX sing 158 n n C1S HS11 GTX sing 159 n n C1S HS12 GTX sing 160 n n C2S C3S GTX sing 161 n n C2S HS21 GTX sing 162 n n C2S HS22 GTX sing 163 n n C3S C4S GTX sing 164 n n C3S HS31 GTX sing 165 n n C3S HS32 GTX sing 166 n n C4S C5S GTX sing 167 n n C4S HS41 GTX sing 168 n n C4S HS42 GTX sing 169 n n C5S C6S GTX sing 170 n n C5S HS51 GTX sing 171 n n C5S HS52 GTX sing 172 n n C6S HS61 GTX sing 173 n n C6S HS62 GTX sing 174 n n C6S HS63 GTX sing 175 n n N3 CA3 GTX sing 176 n n N3 HN3 GTX sing 177 n n CA3 C3 GTX sing 178 n n CA3 HA31 GTX sing 179 n n CA3 HA32 GTX sing 180 n n C3 O31 GTX doub 181 n n C3 O32 GTX sing 182 n n O32 HO3 GTX sing 183 n n # _atom_sites.entry_id 2IMK _atom_sites.fract_transf_matrix[1][1] 0.020197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010722 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTX A 1 302 302 GTX GTX . D 2 GTX B 1 301 301 GTX GTX . E 3 HOH A 1 303 1 HOH HOH . E 3 HOH A 2 304 2 HOH HOH . E 3 HOH A 3 305 3 HOH HOH . E 3 HOH A 4 306 4 HOH HOH . E 3 HOH A 5 307 8 HOH HOH . E 3 HOH A 6 308 9 HOH HOH . E 3 HOH A 7 309 11 HOH HOH . E 3 HOH A 8 310 12 HOH HOH . E 3 HOH A 9 311 13 HOH HOH . E 3 HOH A 10 312 14 HOH HOH . E 3 HOH A 11 313 17 HOH HOH . E 3 HOH A 12 314 18 HOH HOH . E 3 HOH A 13 315 20 HOH HOH . E 3 HOH A 14 316 21 HOH HOH . E 3 HOH A 15 317 23 HOH HOH . E 3 HOH A 16 318 24 HOH HOH . E 3 HOH A 17 319 26 HOH HOH . E 3 HOH A 18 320 27 HOH HOH . E 3 HOH A 19 321 28 HOH HOH . E 3 HOH A 20 322 29 HOH HOH . E 3 HOH A 21 323 30 HOH HOH . E 3 HOH A 22 324 31 HOH HOH . E 3 HOH A 23 325 32 HOH HOH . E 3 HOH A 24 326 35 HOH HOH . E 3 HOH A 25 327 36 HOH HOH . E 3 HOH A 26 328 37 HOH HOH . E 3 HOH A 27 329 38 HOH HOH . E 3 HOH A 28 330 39 HOH HOH . E 3 HOH A 29 331 40 HOH HOH . E 3 HOH A 30 332 41 HOH HOH . E 3 HOH A 31 333 42 HOH HOH . E 3 HOH A 32 334 43 HOH HOH . E 3 HOH A 33 335 45 HOH HOH . E 3 HOH A 34 336 46 HOH HOH . E 3 HOH A 35 337 47 HOH HOH . E 3 HOH A 36 338 48 HOH HOH . E 3 HOH A 37 339 49 HOH HOH . E 3 HOH A 38 340 50 HOH HOH . E 3 HOH A 39 341 51 HOH HOH . E 3 HOH A 40 342 52 HOH HOH . E 3 HOH A 41 343 53 HOH HOH . E 3 HOH A 42 344 55 HOH HOH . E 3 HOH A 43 345 57 HOH HOH . E 3 HOH A 44 346 59 HOH HOH . E 3 HOH A 45 347 61 HOH HOH . E 3 HOH A 46 348 63 HOH HOH . E 3 HOH A 47 349 64 HOH HOH . E 3 HOH A 48 350 65 HOH HOH . E 3 HOH A 49 351 66 HOH HOH . E 3 HOH A 50 352 67 HOH HOH . E 3 HOH A 51 353 68 HOH HOH . E 3 HOH A 52 354 73 HOH HOH . E 3 HOH A 53 355 74 HOH HOH . E 3 HOH A 54 356 76 HOH HOH . E 3 HOH A 55 357 77 HOH HOH . E 3 HOH A 56 358 80 HOH HOH . E 3 HOH A 57 359 81 HOH HOH . E 3 HOH A 58 360 82 HOH HOH . E 3 HOH A 59 361 83 HOH HOH . E 3 HOH A 60 362 85 HOH HOH . E 3 HOH A 61 363 86 HOH HOH . E 3 HOH A 62 364 87 HOH HOH . E 3 HOH A 63 365 88 HOH HOH . E 3 HOH A 64 366 89 HOH HOH . E 3 HOH A 65 367 90 HOH HOH . E 3 HOH A 66 368 97 HOH HOH . E 3 HOH A 67 369 98 HOH HOH . E 3 HOH A 68 370 100 HOH HOH . E 3 HOH A 69 371 104 HOH HOH . E 3 HOH A 70 372 107 HOH HOH . E 3 HOH A 71 373 109 HOH HOH . E 3 HOH A 72 374 110 HOH HOH . E 3 HOH A 73 375 111 HOH HOH . E 3 HOH A 74 376 113 HOH HOH . E 3 HOH A 75 377 114 HOH HOH . E 3 HOH A 76 378 115 HOH HOH . E 3 HOH A 77 379 116 HOH HOH . E 3 HOH A 78 380 118 HOH HOH . E 3 HOH A 79 381 119 HOH HOH . E 3 HOH A 80 382 121 HOH HOH . E 3 HOH A 81 383 123 HOH HOH . E 3 HOH A 82 384 124 HOH HOH . E 3 HOH A 83 385 129 HOH HOH . E 3 HOH A 84 386 131 HOH HOH . E 3 HOH A 85 387 132 HOH HOH . E 3 HOH A 86 388 135 HOH HOH . E 3 HOH A 87 389 137 HOH HOH . E 3 HOH A 88 390 139 HOH HOH . E 3 HOH A 89 391 141 HOH HOH . E 3 HOH A 90 392 142 HOH HOH . E 3 HOH A 91 393 143 HOH HOH . E 3 HOH A 92 394 144 HOH HOH . E 3 HOH A 93 395 146 HOH HOH . E 3 HOH A 94 396 147 HOH HOH . E 3 HOH A 95 397 152 HOH HOH . E 3 HOH A 96 398 154 HOH HOH . E 3 HOH A 97 399 157 HOH HOH . E 3 HOH A 98 400 159 HOH HOH . E 3 HOH A 99 401 162 HOH HOH . F 3 HOH B 1 302 5 HOH HOH . F 3 HOH B 2 303 6 HOH HOH . F 3 HOH B 3 304 7 HOH HOH . F 3 HOH B 4 305 10 HOH HOH . F 3 HOH B 5 306 15 HOH HOH . F 3 HOH B 6 307 16 HOH HOH . F 3 HOH B 7 308 19 HOH HOH . F 3 HOH B 8 309 22 HOH HOH . F 3 HOH B 9 310 25 HOH HOH . F 3 HOH B 10 311 33 HOH HOH . F 3 HOH B 11 312 34 HOH HOH . F 3 HOH B 12 313 44 HOH HOH . F 3 HOH B 13 314 54 HOH HOH . F 3 HOH B 14 315 56 HOH HOH . F 3 HOH B 15 316 58 HOH HOH . F 3 HOH B 16 317 60 HOH HOH . F 3 HOH B 17 318 62 HOH HOH . F 3 HOH B 18 319 69 HOH HOH . F 3 HOH B 19 320 70 HOH HOH . F 3 HOH B 20 321 71 HOH HOH . F 3 HOH B 21 322 72 HOH HOH . F 3 HOH B 22 323 75 HOH HOH . F 3 HOH B 23 324 78 HOH HOH . F 3 HOH B 24 325 79 HOH HOH . F 3 HOH B 25 326 84 HOH HOH . F 3 HOH B 26 327 91 HOH HOH . F 3 HOH B 27 328 92 HOH HOH . F 3 HOH B 28 329 93 HOH HOH . F 3 HOH B 29 330 94 HOH HOH . F 3 HOH B 30 331 95 HOH HOH . F 3 HOH B 31 332 96 HOH HOH . F 3 HOH B 32 333 99 HOH HOH . F 3 HOH B 33 334 101 HOH HOH . F 3 HOH B 34 335 102 HOH HOH . F 3 HOH B 35 336 103 HOH HOH . F 3 HOH B 36 337 105 HOH HOH . F 3 HOH B 37 338 106 HOH HOH . F 3 HOH B 38 339 108 HOH HOH . F 3 HOH B 39 340 112 HOH HOH . F 3 HOH B 40 341 117 HOH HOH . F 3 HOH B 41 342 120 HOH HOH . F 3 HOH B 42 343 122 HOH HOH . F 3 HOH B 43 344 125 HOH HOH . F 3 HOH B 44 345 126 HOH HOH . F 3 HOH B 45 346 127 HOH HOH . F 3 HOH B 46 347 128 HOH HOH . F 3 HOH B 47 348 130 HOH HOH . F 3 HOH B 48 349 133 HOH HOH . F 3 HOH B 49 350 134 HOH HOH . F 3 HOH B 50 351 136 HOH HOH . F 3 HOH B 51 352 138 HOH HOH . F 3 HOH B 52 353 140 HOH HOH . F 3 HOH B 53 354 145 HOH HOH . F 3 HOH B 54 355 148 HOH HOH . F 3 HOH B 55 356 149 HOH HOH . F 3 HOH B 56 357 150 HOH HOH . F 3 HOH B 57 358 151 HOH HOH . F 3 HOH B 58 359 153 HOH HOH . F 3 HOH B 59 360 155 HOH HOH . F 3 HOH B 60 361 156 HOH HOH . F 3 HOH B 61 362 158 HOH HOH . F 3 HOH B 62 363 160 HOH HOH . F 3 HOH B 63 364 161 HOH HOH . F 3 HOH B 64 365 163 HOH HOH . F 3 HOH B 65 366 164 HOH HOH . F 3 HOH B 66 367 165 HOH HOH . F 3 HOH B 67 368 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GTX . . . C 2 15.078 23.697 19.64 1 27.93 ? N1 GTX 302 A 1 HETATM 2 C CA1 GTX . . . C 2 16.255 24.028 18.84 1 21.82 ? CA1 GTX 302 A 1 HETATM 3 C C1 GTX . . . C 2 15.817 24.721 17.59 1 20.55 ? C1 GTX 302 A 1 HETATM 4 O O11 GTX . . . C 2 14.982 24.171 16.858 1 20.92 ? O11 GTX 302 A 1 HETATM 5 O O12 GTX . . . C 2 16.31 25.831 17.346 1 16.61 ? O12 GTX 302 A 1 HETATM 6 C CB1 GTX . . . C 2 17.145 22.853 18.384 1 22.01 ? CB1 GTX 302 A 1 HETATM 7 C CG1 GTX . . . C 2 18.489 23.496 18.055 1 14.95 ? CG1 GTX 302 A 1 HETATM 8 C CD1 GTX . . . C 2 19.684 22.583 18.068 1 15.3 ? CD1 GTX 302 A 1 HETATM 9 O OE1 GTX . . . C 2 19.765 21.772 18.964 1 16.52 ? OE1 GTX 302 A 1 HETATM 10 N N2 GTX . . . C 2 20.568 22.683 17.027 1 13.22 ? N2 GTX 302 A 1 HETATM 11 C CA2 GTX . . . C 2 21.821 21.864 16.95 1 15.91 ? CA2 GTX 302 A 1 HETATM 12 C C2 GTX . . . C 2 22.966 22.646 17.591 1 19.63 ? C2 GTX 302 A 1 HETATM 13 O O2 GTX . . . C 2 23.151 23.844 17.343 1 16.11 ? O2 GTX 302 A 1 HETATM 14 C CB2 GTX . . . C 2 22.041 21.709 15.45 1 17.69 ? CB2 GTX 302 A 1 HETATM 15 S SG2 GTX . . . C 2 20.856 20.541 14.848 1 21.19 ? SG2 GTX 302 A 1 HETATM 16 C C1S GTX . . . C 2 21.482 18.953 15.312 1 21.93 ? C1S GTX 302 A 1 HETATM 17 C C2S GTX . . . C 2 22.074 18.367 14.02 1 25.6 ? C2S GTX 302 A 1 HETATM 18 C C3S GTX . . . C 2 23.334 19.074 13.493 1 22.83 ? C3S GTX 302 A 1 HETATM 19 C C4S GTX . . . C 2 24.137 18.129 12.614 1 19.37 ? C4S GTX 302 A 1 HETATM 20 C C5S GTX . . . C 2 24.83 18.824 11.44 1 22.51 ? C5S GTX 302 A 1 HETATM 21 C C6S GTX . . . C 2 26.259 18.284 11.134 1 17.32 ? C6S GTX 302 A 1 HETATM 22 N N3 GTX . . . C 2 23.746 22.037 18.497 1 18.86 ? N3 GTX 302 A 1 HETATM 23 C CA3 GTX . . . C 2 24.842 22.664 19.197 1 19.42 ? CA3 GTX 302 A 1 HETATM 24 C C3 GTX . . . C 2 24.91 22.465 20.71 1 23.76 ? C3 GTX 302 A 1 HETATM 25 O O31 GTX . . . C 2 26.031 22.622 21.219 1 27.71 ? O31 GTX 302 A 1 HETATM 26 O O32 GTX . . . C 2 23.944 22.175 21.456 1 21.54 ? O32 GTX 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 26 #