data_2IND # _model_server_result.job_id Hy-ooRybbu4-VlVm55nBIw _model_server_result.datetime_utc '2025-07-27 07:34:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ind # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 2IND # _exptl.entry_id 2IND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.331 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2IND _cell.length_a 182.521 _cell.length_b 182.521 _cell.length_c 67.792 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IND _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_553 -x,-x+y,-z-5/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -112.986667 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 103 A GLU 104 1_555 E MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 A OE1 GLU 133 A GLU 134 1_555 D MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc3 A OE2 GLU 133 A GLU 134 1_555 E MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc4 A ND1 HIS 136 A HIS 137 1_555 E MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc5 A OE2 GLU 196 A GLU 197 1_555 D MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc6 A OE2 GLU 230 A GLU 231 1_555 D MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc7 A OE1 GLU 230 A GLU 231 1_555 D MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc8 A OE1 GLU 230 A GLU 231 1_555 E MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc9 A NE2 HIS 233 A HIS 234 1_555 D MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc10 D MN MN . A MN 501 1_555 G O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc11 E MN MN . A MN 502 1_555 G O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc12 E MN MN . A MN 502 1_555 G O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'C12 H26 O7' _chem_comp.formula_weight 282.331 _chem_comp.id P6G _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 P6G sing 237 n n O1 H1 P6G sing 238 n n C2 C3 P6G sing 239 n n C2 H21 P6G sing 240 n n C2 H22 P6G sing 241 n n C3 O4 P6G sing 242 n n C3 H31 P6G sing 243 n n C3 H32 P6G sing 244 n n O4 C5 P6G sing 245 n n C5 C6 P6G sing 246 n n C5 H51 P6G sing 247 n n C5 H52 P6G sing 248 n n C6 O7 P6G sing 249 n n C6 H61 P6G sing 250 n n C6 H62 P6G sing 251 n n O7 C8 P6G sing 252 n n C8 C9 P6G sing 253 n n C8 H81 P6G sing 254 n n C8 H82 P6G sing 255 n n C9 O10 P6G sing 256 n n C9 H91 P6G sing 257 n n C9 H92 P6G sing 258 n n O10 C11 P6G sing 259 n n C11 C12 P6G sing 260 n n C11 H111 P6G sing 261 n n C11 H112 P6G sing 262 n n C12 O13 P6G sing 263 n n C12 H121 P6G sing 264 n n C12 H122 P6G sing 265 n n O13 C14 P6G sing 266 n n C14 C15 P6G sing 267 n n C14 H141 P6G sing 268 n n C14 H142 P6G sing 269 n n C15 O16 P6G sing 270 n n C15 H151 P6G sing 271 n n C15 H152 P6G sing 272 n n O16 C17 P6G sing 273 n n C17 C18 P6G sing 274 n n C17 H171 P6G sing 275 n n C17 H172 P6G sing 276 n n C18 O19 P6G sing 277 n n C18 H181 P6G sing 278 n n C18 H182 P6G sing 279 n n O19 H19 P6G sing 280 n n # _atom_sites.entry_id 2IND _atom_sites.fract_transf_matrix[1][1] 0.005479 _atom_sites.fract_transf_matrix[1][2] 0.003163 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006326 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014751 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN A 1 501 501 MN MN . E 4 MN A 1 502 502 MN MN . F 5 P6G A 1 503 401 P6G P6G . G 6 HOH A 1 504 1 HOH HOH . G 6 HOH A 2 505 2 HOH HOH . G 6 HOH A 3 506 3 HOH HOH . G 6 HOH A 4 507 4 HOH HOH . G 6 HOH A 5 508 5 HOH HOH . G 6 HOH A 6 509 6 HOH HOH . G 6 HOH A 7 510 9 HOH HOH . G 6 HOH A 8 511 10 HOH HOH . G 6 HOH A 9 512 12 HOH HOH . G 6 HOH A 10 513 20 HOH HOH . G 6 HOH A 11 514 21 HOH HOH . G 6 HOH A 12 515 22 HOH HOH . G 6 HOH A 13 516 23 HOH HOH . G 6 HOH A 14 517 29 HOH HOH . G 6 HOH A 15 518 30 HOH HOH . G 6 HOH A 16 519 31 HOH HOH . G 6 HOH A 17 520 32 HOH HOH . G 6 HOH A 18 521 33 HOH HOH . G 6 HOH A 19 522 34 HOH HOH . G 6 HOH A 20 523 35 HOH HOH . G 6 HOH A 21 524 42 HOH HOH . G 6 HOH A 22 525 43 HOH HOH . G 6 HOH A 23 526 47 HOH HOH . G 6 HOH A 24 527 48 HOH HOH . G 6 HOH A 25 528 49 HOH HOH . G 6 HOH A 26 529 50 HOH HOH . G 6 HOH A 27 530 51 HOH HOH . G 6 HOH A 28 531 52 HOH HOH . G 6 HOH A 29 532 53 HOH HOH . G 6 HOH A 30 533 54 HOH HOH . G 6 HOH A 31 534 59 HOH HOH . G 6 HOH A 32 535 60 HOH HOH . G 6 HOH A 33 536 61 HOH HOH . G 6 HOH A 34 537 62 HOH HOH . G 6 HOH A 35 538 63 HOH HOH . G 6 HOH A 36 539 69 HOH HOH . G 6 HOH A 37 540 70 HOH HOH . G 6 HOH A 38 541 71 HOH HOH . G 6 HOH A 39 542 72 HOH HOH . G 6 HOH A 40 543 73 HOH HOH . G 6 HOH A 41 544 74 HOH HOH . G 6 HOH A 42 545 75 HOH HOH . G 6 HOH A 43 546 76 HOH HOH . G 6 HOH A 44 547 77 HOH HOH . G 6 HOH A 45 548 78 HOH HOH . G 6 HOH A 46 549 79 HOH HOH . G 6 HOH A 47 550 80 HOH HOH . G 6 HOH A 48 551 81 HOH HOH . G 6 HOH A 49 552 82 HOH HOH . G 6 HOH A 50 553 83 HOH HOH . G 6 HOH A 51 554 84 HOH HOH . G 6 HOH A 52 555 85 HOH HOH . G 6 HOH A 53 556 86 HOH HOH . G 6 HOH A 54 557 89 HOH HOH . G 6 HOH A 55 558 90 HOH HOH . G 6 HOH A 56 559 91 HOH HOH . G 6 HOH A 57 560 92 HOH HOH . G 6 HOH A 58 561 93 HOH HOH . G 6 HOH A 59 562 108 HOH HOH . G 6 HOH A 60 563 109 HOH HOH . G 6 HOH A 61 564 112 HOH HOH . G 6 HOH A 62 565 114 HOH HOH . G 6 HOH A 63 566 123 HOH HOH . G 6 HOH A 64 567 134 HOH HOH . G 6 HOH A 65 568 135 HOH HOH . G 6 HOH A 66 569 137 HOH HOH . G 6 HOH A 67 570 138 HOH HOH . G 6 HOH A 68 571 139 HOH HOH . G 6 HOH A 69 572 140 HOH HOH . G 6 HOH A 70 573 141 HOH HOH . H 6 HOH B 1 331 7 HOH HOH . H 6 HOH B 2 332 8 HOH HOH . H 6 HOH B 3 333 11 HOH HOH . H 6 HOH B 4 334 13 HOH HOH . H 6 HOH B 5 335 14 HOH HOH . H 6 HOH B 6 336 15 HOH HOH . H 6 HOH B 7 337 16 HOH HOH . H 6 HOH B 8 338 17 HOH HOH . H 6 HOH B 9 339 18 HOH HOH . H 6 HOH B 10 340 19 HOH HOH . H 6 HOH B 11 341 24 HOH HOH . H 6 HOH B 12 342 25 HOH HOH . H 6 HOH B 13 343 26 HOH HOH . H 6 HOH B 14 344 27 HOH HOH . H 6 HOH B 15 345 28 HOH HOH . H 6 HOH B 16 346 36 HOH HOH . H 6 HOH B 17 347 37 HOH HOH . H 6 HOH B 18 348 38 HOH HOH . H 6 HOH B 19 349 39 HOH HOH . H 6 HOH B 20 350 40 HOH HOH . H 6 HOH B 21 351 41 HOH HOH . H 6 HOH B 22 352 44 HOH HOH . H 6 HOH B 23 353 45 HOH HOH . H 6 HOH B 24 354 46 HOH HOH . H 6 HOH B 25 355 55 HOH HOH . H 6 HOH B 26 356 56 HOH HOH . H 6 HOH B 27 357 57 HOH HOH . H 6 HOH B 28 358 58 HOH HOH . H 6 HOH B 29 359 64 HOH HOH . H 6 HOH B 30 360 65 HOH HOH . H 6 HOH B 31 361 66 HOH HOH . H 6 HOH B 32 362 67 HOH HOH . H 6 HOH B 33 363 68 HOH HOH . H 6 HOH B 34 364 94 HOH HOH . H 6 HOH B 35 365 95 HOH HOH . H 6 HOH B 36 366 96 HOH HOH . H 6 HOH B 37 367 97 HOH HOH . H 6 HOH B 38 368 98 HOH HOH . H 6 HOH B 39 369 99 HOH HOH . H 6 HOH B 40 370 100 HOH HOH . H 6 HOH B 41 371 101 HOH HOH . H 6 HOH B 42 372 102 HOH HOH . H 6 HOH B 43 373 103 HOH HOH . H 6 HOH B 44 374 104 HOH HOH . H 6 HOH B 45 375 105 HOH HOH . H 6 HOH B 46 376 106 HOH HOH . H 6 HOH B 47 377 107 HOH HOH . H 6 HOH B 48 378 110 HOH HOH . H 6 HOH B 49 379 111 HOH HOH . H 6 HOH B 50 380 113 HOH HOH . H 6 HOH B 51 381 115 HOH HOH . H 6 HOH B 52 382 116 HOH HOH . H 6 HOH B 53 383 117 HOH HOH . H 6 HOH B 54 384 118 HOH HOH . H 6 HOH B 55 385 119 HOH HOH . H 6 HOH B 56 386 120 HOH HOH . H 6 HOH B 57 387 121 HOH HOH . H 6 HOH B 58 388 122 HOH HOH . H 6 HOH B 59 389 124 HOH HOH . H 6 HOH B 60 390 125 HOH HOH . H 6 HOH B 61 391 126 HOH HOH . H 6 HOH B 62 392 127 HOH HOH . H 6 HOH B 63 393 128 HOH HOH . H 6 HOH B 64 394 129 HOH HOH . H 6 HOH B 65 395 130 HOH HOH . H 6 HOH B 66 396 131 HOH HOH . H 6 HOH B 67 397 136 HOH HOH . I 6 HOH C 1 87 87 HOH HOH . I 6 HOH C 2 88 88 HOH HOH . I 6 HOH C 3 132 132 HOH HOH . I 6 HOH C 4 133 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P6G . . . F 5 -38.492 42.083 -40.936 1 77.92 ? O1 P6G 503 A 1 HETATM 2 C C2 P6G . . . F 5 -39.814 41.527 -40.86 1 80.45 ? C2 P6G 503 A 1 HETATM 3 C C3 P6G . . . F 5 -40.674 42.043 -42.023 1 80.3 ? C3 P6G 503 A 1 HETATM 4 O O4 P6G . . . F 5 -41.238 40.943 -42.762 1 80.94 ? O4 P6G 503 A 1 HETATM 5 C C5 P6G . . . F 5 -42.013 41.528 -43.814 1 81.67 ? C5 P6G 503 A 1 HETATM 6 C C6 P6G . . . F 5 -42.668 40.449 -44.681 1 80.45 ? C6 P6G 503 A 1 HETATM 7 O O7 P6G . . . F 5 -43.944 40.931 -45.101 1 80.56 ? O7 P6G 503 A 1 HETATM 8 C C8 P6G . . . F 5 -44.559 39.928 -45.915 1 80.27 ? C8 P6G 503 A 1 HETATM 9 C C9 P6G . . . F 5 -45.939 40.43 -46.358 1 80.87 ? C9 P6G 503 A 1 HETATM 10 O O10 P6G . . . F 5 -46.549 41.118 -45.256 1 82.61 ? O10 P6G 503 A 1 HETATM 11 C C11 P6G . . . F 5 -47.834 41.583 -45.669 1 82.66 ? C11 P6G 503 A 1 HETATM 12 C C12 P6G . . . F 5 -48.502 42.33 -44.501 1 82.66 ? C12 P6G 503 A 1 HETATM 13 O O13 P6G . . . F 5 -48.702 43.703 -44.875 1 84.7 ? O13 P6G 503 A 1 HETATM 14 C C14 P6G . . . F 5 -49.325 44.373 -43.773 1 83.77 ? C14 P6G 503 A 1 HETATM 15 C C15 P6G . . . F 5 -49.573 45.854 -44.135 1 83.5 ? C15 P6G 503 A 1 HETATM 16 O O16 P6G . . . F 5 -50.946 46.022 -44.532 1 83.3 ? O16 P6G 503 A 1 HETATM 17 C C17 P6G . . . F 5 -51.16 47.402 -44.856 1 80.49 ? C17 P6G 503 A 1 HETATM 18 C C18 P6G . . . F 5 -52.624 47.592 -45.286 1 78.49 ? C18 P6G 503 A 1 HETATM 19 O O19 P6G . . . F 5 -53.189 48.736 -44.636 1 75.56 ? O19 P6G 503 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #