data_2INQ # _model_server_result.job_id p79eYSllr1WL50y5-nUFzg _model_server_result.datetime_utc '2025-04-03 22:04:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2inq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1146}' # _entry.id 2INQ # _exptl.entry_id 2INQ _exptl.method 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 455.447 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-(4-{[(2,4-DIAMINOPTERIDIN-1-IUM-6-YL)METHYL](METHYL)AMINO}BENZOYL)-L-GLUTAMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2INQ _cell.length_a 93.12 _cell.length_b 93.12 _cell.length_c 73.87 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2INQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C20 H23 N8 O5 1' _chem_comp.formula_weight 455.447 _chem_comp.id MT1 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-(4-{[(2,4-DIAMINOPTERIDIN-1-IUM-6-YL)METHYL](METHYL)AMINO}BENZOYL)-L-GLUTAMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'METHOTREXATE PROTONATED AT N1' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 H1 MT1 sing 239 n n N1 C8A MT1 doub 240 n y N1 C2 MT1 sing 241 n y C2 NA2 MT1 sing 242 n n C2 N3 MT1 doub 243 n y NA2 HA21 MT1 sing 244 n n NA2 HA22 MT1 sing 245 n n N3 C4 MT1 sing 246 n y C4 C4A MT1 doub 247 n y C4 NA4 MT1 sing 248 n n NA4 HA41 MT1 sing 249 n n NA4 HA42 MT1 sing 250 n n C4A C8A MT1 sing 251 n y C4A N5 MT1 sing 252 n y N5 C6 MT1 doub 253 n y C6 C7 MT1 sing 254 n y C6 C9 MT1 sing 255 n n C7 N8 MT1 doub 256 n y C7 H7 MT1 sing 257 n n N8 C8A MT1 sing 258 n y C9 N10 MT1 sing 259 n n C9 H91 MT1 sing 260 n n C9 H92 MT1 sing 261 n n N10 C14 MT1 sing 262 n n N10 CM MT1 sing 263 n n CM HM1 MT1 sing 264 n n CM HM2 MT1 sing 265 n n CM HM3 MT1 sing 266 n n C11 C MT1 sing 267 n n C11 C12 MT1 doub 268 n y C11 C16 MT1 sing 269 n y C12 C13 MT1 sing 270 n y C12 H12 MT1 sing 271 n n C13 C14 MT1 doub 272 n y C13 H13 MT1 sing 273 n n C14 C15 MT1 sing 274 n y C15 C16 MT1 doub 275 n y C15 H15 MT1 sing 276 n n C16 H16 MT1 sing 277 n n C O MT1 doub 278 n n C N MT1 sing 279 n n N CA MT1 sing 280 n n N H MT1 sing 281 n n CA CB MT1 sing 282 n n CA CT MT1 sing 283 n n CA HA MT1 sing 284 n n CT O2 MT1 doub 285 n n CT O1 MT1 sing 286 n n O1 HO1 MT1 sing 287 n n CB CG MT1 sing 288 n n CB HB1 MT1 sing 289 n n CB HB2 MT1 sing 290 n n CG CD MT1 sing 291 n n CG HG1 MT1 sing 292 n n CG HG2 MT1 sing 293 n n CD OE1 MT1 doub 294 n n CD OE2 MT1 sing 295 n n OE2 HOE2 MT1 sing 296 n n # _atom_sites.entry_id 2INQ _atom_sites.fract_transf_matrix[1][1] 0.010739 _atom_sites.fract_transf_matrix[1][2] 0.0062 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MT1 A 1 1146 1146 MT1 MT1 . D 2 MT1 B 1 1147 1147 MT1 MT1 . E 3 HOH A 1 1147 147 HOH HOH . E 3 HOH A 2 1148 149 HOH HOH . E 3 HOH A 3 1149 150 HOH HOH . E 3 HOH A 4 1150 152 HOH HOH . E 3 HOH A 5 1151 153 HOH HOH . E 3 HOH A 6 1152 154 HOH HOH . E 3 DOD A 7 1153 2 DOD DOD . E 3 DOD A 8 1154 5 DOD DOD . E 3 DOD A 9 1155 12 DOD DOD . E 3 DOD A 10 1156 17 DOD DOD . E 3 DOD A 11 1157 21 DOD DOD . E 3 DOD A 12 1158 26 DOD DOD . E 3 DOD A 13 1159 27 DOD DOD . E 3 DOD A 14 1160 35 DOD DOD . E 3 DOD A 15 1161 54 DOD DOD . E 3 DOD A 16 1162 55 DOD DOD . E 3 DOD A 17 1163 56 DOD DOD . E 3 DOD A 18 1164 57 DOD DOD . E 3 DOD A 19 1165 58 DOD DOD . E 3 DOD A 20 1166 60 DOD DOD . E 3 DOD A 21 1167 61 DOD DOD . E 3 DOD A 22 1168 63 DOD DOD . E 3 DOD A 23 1169 64 DOD DOD . E 3 DOD A 24 1170 67 DOD DOD . E 3 DOD A 25 1171 70 DOD DOD . E 3 DOD A 26 1172 71 DOD DOD . E 3 DOD A 27 1173 72 DOD DOD . E 3 DOD A 28 1174 73 DOD DOD . E 3 DOD A 29 1175 74 DOD DOD . E 3 DOD A 30 1176 75 DOD DOD . E 3 DOD A 31 1177 76 DOD DOD . E 3 DOD A 32 1178 77 DOD DOD . E 3 DOD A 33 1179 78 DOD DOD . E 3 DOD A 34 1180 79 DOD DOD . E 3 DOD A 35 1181 80 DOD DOD . E 3 DOD A 36 1182 81 DOD DOD . E 3 DOD A 37 1183 82 DOD DOD . E 3 DOD A 38 1184 83 DOD DOD . E 3 DOD A 39 1185 84 DOD DOD . E 3 DOD A 40 1186 85 DOD DOD . E 3 DOD A 41 1187 86 DOD DOD . E 3 DOD A 42 1188 87 DOD DOD . E 3 DOD A 43 1189 88 DOD DOD . E 3 DOD A 44 1190 106 DOD DOD . E 3 DOD A 45 1191 107 DOD DOD . E 3 DOD A 46 1192 108 DOD DOD . E 3 DOD A 47 1193 109 DOD DOD . E 3 DOD A 48 1194 110 DOD DOD . E 3 DOD A 49 1195 111 DOD DOD . E 3 DOD A 50 1196 112 DOD DOD . E 3 DOD A 51 1197 118 DOD DOD . E 3 DOD A 52 1198 120 DOD DOD . E 3 DOD A 53 1199 125 DOD DOD . E 3 DOD A 54 1200 126 DOD DOD . E 3 DOD A 55 1201 129 DOD DOD . E 3 DOD A 56 1202 130 DOD DOD . E 3 DOD A 57 1203 132 DOD DOD . E 3 DOD A 58 1204 134 DOD DOD . E 3 DOD A 59 1205 136 DOD DOD . E 3 DOD A 60 1206 137 DOD DOD . E 3 DOD A 61 1207 138 DOD DOD . E 3 DOD A 62 1208 140 DOD DOD . E 3 DOD A 63 1209 141 DOD DOD . E 3 DOD A 64 1210 142 DOD DOD . E 3 DOD A 65 1211 143 DOD DOD . F 3 HOH B 1 1148 148 HOH HOH . F 3 HOH B 2 1149 151 HOH HOH . F 3 DOD B 3 1150 1 DOD DOD . F 3 DOD B 4 1151 3 DOD DOD . F 3 DOD B 5 1152 4 DOD DOD . F 3 DOD B 6 1153 6 DOD DOD . F 3 DOD B 7 1154 7 DOD DOD . F 3 DOD B 8 1155 8 DOD DOD . F 3 DOD B 9 1156 9 DOD DOD . F 3 DOD B 10 1157 10 DOD DOD . F 3 DOD B 11 1158 11 DOD DOD . F 3 DOD B 12 1159 13 DOD DOD . F 3 DOD B 13 1160 14 DOD DOD . F 3 DOD B 14 1161 15 DOD DOD . F 3 DOD B 15 1162 16 DOD DOD . F 3 DOD B 16 1163 18 DOD DOD . F 3 DOD B 17 1164 19 DOD DOD . F 3 DOD B 18 1165 20 DOD DOD . F 3 DOD B 19 1166 22 DOD DOD . F 3 DOD B 20 1167 23 DOD DOD . F 3 DOD B 21 1168 24 DOD DOD . F 3 DOD B 22 1169 25 DOD DOD . F 3 DOD B 23 1170 28 DOD DOD . F 3 DOD B 24 1171 29 DOD DOD . F 3 DOD B 25 1172 30 DOD DOD . F 3 DOD B 26 1173 31 DOD DOD . F 3 DOD B 27 1174 32 DOD DOD . F 3 DOD B 28 1175 33 DOD DOD . F 3 DOD B 29 1176 34 DOD DOD . F 3 DOD B 30 1177 36 DOD DOD . F 3 DOD B 31 1178 37 DOD DOD . F 3 DOD B 32 1179 38 DOD DOD . F 3 DOD B 33 1180 39 DOD DOD . F 3 DOD B 34 1181 40 DOD DOD . F 3 DOD B 35 1182 41 DOD DOD . F 3 DOD B 36 1183 42 DOD DOD . F 3 DOD B 37 1184 43 DOD DOD . F 3 DOD B 38 1185 44 DOD DOD . F 3 DOD B 39 1186 45 DOD DOD . F 3 DOD B 40 1187 46 DOD DOD . F 3 DOD B 41 1188 47 DOD DOD . F 3 DOD B 42 1189 48 DOD DOD . F 3 DOD B 43 1190 49 DOD DOD . F 3 DOD B 44 1191 50 DOD DOD . F 3 DOD B 45 1192 51 DOD DOD . F 3 DOD B 46 1193 52 DOD DOD . F 3 DOD B 47 1194 59 DOD DOD . F 3 DOD B 48 1195 62 DOD DOD . F 3 DOD B 49 1196 65 DOD DOD . F 3 DOD B 50 1197 66 DOD DOD . F 3 DOD B 51 1198 68 DOD DOD . F 3 DOD B 52 1199 69 DOD DOD . F 3 DOD B 53 1200 89 DOD DOD . F 3 DOD B 54 1201 90 DOD DOD . F 3 DOD B 55 1202 91 DOD DOD . F 3 DOD B 56 1203 92 DOD DOD . F 3 DOD B 57 1204 93 DOD DOD . F 3 DOD B 58 1205 94 DOD DOD . F 3 DOD B 59 1206 95 DOD DOD . F 3 DOD B 60 1207 96 DOD DOD . F 3 DOD B 61 1208 97 DOD DOD . F 3 DOD B 62 1209 98 DOD DOD . F 3 DOD B 63 1210 99 DOD DOD . F 3 DOD B 64 1211 100 DOD DOD . F 3 DOD B 65 1212 101 DOD DOD . F 3 DOD B 66 1213 102 DOD DOD . F 3 DOD B 67 1214 103 DOD DOD . F 3 DOD B 68 1215 104 DOD DOD . F 3 DOD B 69 1216 105 DOD DOD . F 3 DOD B 70 1217 113 DOD DOD . F 3 DOD B 71 1218 114 DOD DOD . F 3 DOD B 72 1219 115 DOD DOD . F 3 DOD B 73 1220 116 DOD DOD . F 3 DOD B 74 1221 117 DOD DOD . F 3 DOD B 75 1222 119 DOD DOD . F 3 DOD B 76 1223 121 DOD DOD . F 3 DOD B 77 1224 122 DOD DOD . F 3 DOD B 78 1225 123 DOD DOD . F 3 DOD B 79 1226 124 DOD DOD . F 3 DOD B 80 1227 127 DOD DOD . F 3 DOD B 81 1228 128 DOD DOD . F 3 DOD B 82 1229 131 DOD DOD . F 3 DOD B 83 1230 133 DOD DOD . F 3 DOD B 84 1231 135 DOD DOD . F 3 DOD B 85 1232 139 DOD DOD . F 3 DOD B 86 1233 144 DOD DOD . F 3 DOD B 87 1234 145 DOD DOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MT1 . . . C 2 22.966 58.565 24.288 1 11.26 ? N1 MT1 1146 A 1 HETATM 2 C C2 MT1 . . . C 2 23.623 58.156 23.216 1 11.81 ? C2 MT1 1146 A 1 HETATM 3 N NA2 MT1 . . . C 2 24.925 58.145 23.227 1 10.4 ? NA2 MT1 1146 A 1 HETATM 4 N N3 MT1 . . . C 2 22.884 57.742 22.158 1 10.34 ? N3 MT1 1146 A 1 HETATM 5 C C4 MT1 . . . C 2 21.545 57.778 22.02 1 9.55 ? C4 MT1 1146 A 1 HETATM 6 N NA4 MT1 . . . C 2 20.944 57.399 20.98 1 8.59 ? NA4 MT1 1146 A 1 HETATM 7 C C4A MT1 . . . C 2 20.887 58.274 23.215 1 10.29 ? C4A MT1 1146 A 1 HETATM 8 N N5 MT1 . . . C 2 19.535 58.398 23.175 1 10.43 ? N5 MT1 1146 A 1 HETATM 9 C C6 MT1 . . . C 2 18.932 58.838 24.3 1 11.44 ? C6 MT1 1146 A 1 HETATM 10 C C7 MT1 . . . C 2 19.724 59.159 25.427 1 12.92 ? C7 MT1 1146 A 1 HETATM 11 N N8 MT1 . . . C 2 21.029 59.091 25.444 1 13.01 ? N8 MT1 1146 A 1 HETATM 12 C C8A MT1 . . . C 2 21.612 58.608 24.272 1 10.49 ? C8A MT1 1146 A 1 HETATM 13 C C9 MT1 . . . C 2 17.465 58.978 24.257 1 12.73 ? C9 MT1 1146 A 1 HETATM 14 N N10 MT1 . . . C 2 16.927 59.865 25.363 1 14.51 ? N10 MT1 1146 A 1 HETATM 15 C CM MT1 . . . C 2 16.01 59.225 26.352 1 17.1 ? CM MT1 1146 A 1 HETATM 16 C C11 MT1 . . . C 2 17.975 63.912 25.75 1 16.12 ? C11 MT1 1146 A 1 HETATM 17 C C12 MT1 . . . C 2 17.087 63.286 26.68 1 14.79 ? C12 MT1 1146 A 1 HETATM 18 C C13 MT1 . . . C 2 16.738 61.967 26.51 1 14.67 ? C13 MT1 1146 A 1 HETATM 19 C C14 MT1 . . . C 2 17.261 61.226 25.425 1 15.22 ? C14 MT1 1146 A 1 HETATM 20 C C15 MT1 . . . C 2 18.117 61.862 24.512 1 13.62 ? C15 MT1 1146 A 1 HETATM 21 C C16 MT1 . . . C 2 18.468 63.163 24.657 1 11.91 ? C16 MT1 1146 A 1 HETATM 22 C C MT1 . . . C 2 18.316 65.358 25.932 1 19.82 ? C MT1 1146 A 1 HETATM 23 O O MT1 . . . C 2 17.74 66.019 26.844 1 20.35 ? O MT1 1146 A 1 HETATM 24 N N MT1 . . . C 2 19.22 65.893 25.148 1 17.08 ? N MT1 1146 A 1 HETATM 25 C CA MT1 . . . C 2 19.637 67.322 25.147 1 18.91 ? CA MT1 1146 A 1 HETATM 26 C CT MT1 . . . C 2 19.959 67.585 23.673 1 18.55 ? CT MT1 1146 A 1 HETATM 27 O O1 MT1 . . . C 2 20.192 66.59 22.901 1 13.71 ? O1 MT1 1146 A 1 HETATM 28 O O2 MT1 . . . C 2 19.966 68.787 23.33 1 17.22 ? O2 MT1 1146 A 1 HETATM 29 C CB MT1 . . . C 2 20.934 67.532 25.955 1 17.82 ? CB MT1 1146 A 1 HETATM 30 C CG MT1 . . . C 2 20.751 67.467 27.506 1 27.3 ? CG MT1 1146 A 1 HETATM 31 C CD MT1 . . . C 2 19.775 68.545 28.024 1 34.01 ? CD MT1 1146 A 1 HETATM 32 O OE1 MT1 . . . C 2 19.233 68.227 29.185 1 37.78 ? OE1 MT1 1146 A 1 HETATM 33 O OE2 MT1 . . . C 2 19.55 69.628 27.381 1 37.05 ? OE2 MT1 1146 A 1 HETATM 34 D D MT1 . . . C 2 19.589 65.381 24.562 1 20.57 ? D MT1 1146 A 1 HETATM 35 D D1 MT1 . . . C 2 23.397 58.802 24.994 0.37 18.71 ? D1 MT1 1146 A 1 HETATM 36 H HA21 MT1 . . . C 2 25.344 58.451 23.998 1 12.33 ? HA21 MT1 1146 A 1 HETATM 37 H HA22 MT1 . . . C 2 25.197 57.957 22.496 1 25.39 ? HA22 MT1 1146 A 1 HETATM 38 H HA41 MT1 . . . C 2 21.514 57.036 20.16 1 9.88 ? HA41 MT1 1146 A 1 HETATM 39 H HA42 MT1 . . . C 2 20.005 57.511 20.906 1 14.19 ? HA42 MT1 1146 A 1 HETATM 40 H H91 MT1 . . . C 2 17.133 57.909 24.389 1 19.98 ? H91 MT1 1146 A 1 HETATM 41 H H92 MT1 . . . C 2 17.248 59.268 23.368 1 11.23 ? H92 MT1 1146 A 1 HETATM 42 H HM1 MT1 . . . C 2 15.652 59.835 27.07 1 18.14 ? HM1 MT1 1146 A 1 HETATM 43 H HM2 MT1 . . . C 2 15.187 58.706 25.815 1 10.06 ? HM2 MT1 1146 A 1 HETATM 44 H HM3 MT1 . . . C 2 16.583 58.383 26.849 1 26.2 ? HM3 MT1 1146 A 1 HETATM 45 H H12 MT1 . . . C 2 16.676 63.867 27.514 1 15.26 ? H12 MT1 1146 A 1 HETATM 46 H H13 MT1 . . . C 2 16.071 61.529 27.218 1 22.01 ? H13 MT1 1146 A 1 HETATM 47 H H15 MT1 . . . C 2 18.446 61.287 23.599 1 19.54 ? H15 MT1 1146 A 1 HETATM 48 H H16 MT1 . . . C 2 19.051 63.625 23.968 1 10.65 ? H16 MT1 1146 A 1 HETATM 49 H HA MT1 . . . C 2 18.863 67.85 25.362 1 23.57 ? HA MT1 1146 A 1 HETATM 50 H HB1 MT1 . . . C 2 21.071 68.542 25.995 1 15.95 ? HB1 MT1 1146 A 1 HETATM 51 H HB2 MT1 . . . C 2 21.654 66.836 25.96 1 21.49 ? HB2 MT1 1146 A 1 HETATM 52 H HG1 MT1 . . . C 2 20.297 66.693 27.985 1 29.4 ? HG1 MT1 1146 A 1 HETATM 53 H HG2 MT1 . . . C 2 21.698 67.366 27.951 1 23.78 ? HG2 MT1 1146 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #