data_2IO4
#
_model_server_result.job_id            hxsVBf0p6oh2grbFOh_bVw 
_model_server_result.datetime_utc      '2024-11-15 23:24:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2io4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":601}' 
#
_entry.id    2IO4 
#
_exptl.entry_id    2IO4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2IO4 
_cell.length_a            104.991 
_cell.length_b            112.727 
_cell.length_c            101.851 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2IO4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA,PQS dimeric 2 author_and_software_defined_assembly 1 
PISA,PQS dimeric 2 author_and_software_defined_assembly 2 
PISA octameric 8 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L 1 1 
C,D,M,N 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 104.991 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O ASP 145 B ASP 145 1_555 F CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc2 B OD2 ASP 149 B ASP 149 1_555 F CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc3 F CA CA . B CA 701 1_555 D O ASP 145 D ASP 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc4 F CA CA . B CA 701 1_555 D OD2 ASP 149 D ASP 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 224 n n 
C1 H11 MPD sing 225 n n 
C1 H12 MPD sing 226 n n 
C1 H13 MPD sing 227 n n 
C2 O2 MPD sing 228 n n 
C2 CM MPD sing 229 n n 
C2 C3 MPD sing 230 n n 
O2 HO2 MPD sing 231 n n 
CM HM1 MPD sing 232 n n 
CM HM2 MPD sing 233 n n 
CM HM3 MPD sing 234 n n 
C3 C4 MPD sing 235 n n 
C3 H31 MPD sing 236 n n 
C3 H32 MPD sing 237 n n 
C4 O4 MPD sing 238 n n 
C4 C5 MPD sing 239 n n 
C4 H4 MPD sing 240 n n 
O4 HO4 MPD sing 241 n n 
C5 H51 MPD sing 242 n n 
C5 H52 MPD sing 243 n n 
C5 H53 MPD sing 244 n n 
#
_atom_sites.entry_id                     2IO4 
_atom_sites.fract_transf_matrix[1][1]    0.009525 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008871 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009818 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MPD A 1 250 1 MPD MPD . 
F 4 CA B 1 701 1 CA CA . 
G 3 MPD B 1 301 1 MPD MPD . 
H 3 MPD B 1 401 1 MPD MPD . 
I 3 MPD B 1 501 1 MPD MPD . 
J 3 MPD B 1 601 1 MPD MPD . 
K 5 HOH A 1 251 22 HOH HOH . 
K 5 HOH A 2 252 26 HOH HOH . 
K 5 HOH A 3 253 28 HOH HOH . 
K 5 HOH A 4 254 34 HOH HOH . 
K 5 HOH A 5 255 35 HOH HOH . 
K 5 HOH A 6 256 36 HOH HOH . 
K 5 HOH A 7 257 41 HOH HOH . 
K 5 HOH A 8 258 45 HOH HOH . 
K 5 HOH A 9 259 47 HOH HOH . 
K 5 HOH A 10 260 48 HOH HOH . 
K 5 HOH A 11 261 51 HOH HOH . 
K 5 HOH A 12 262 54 HOH HOH . 
K 5 HOH A 13 263 57 HOH HOH . 
K 5 HOH A 14 264 58 HOH HOH . 
K 5 HOH A 15 265 60 HOH HOH . 
K 5 HOH A 16 266 62 HOH HOH . 
K 5 HOH A 17 267 63 HOH HOH . 
K 5 HOH A 18 268 65 HOH HOH . 
K 5 HOH A 19 269 66 HOH HOH . 
K 5 HOH A 20 270 92 HOH HOH . 
K 5 HOH A 21 271 93 HOH HOH . 
K 5 HOH A 22 272 97 HOH HOH . 
K 5 HOH A 23 273 105 HOH HOH . 
K 5 HOH A 24 274 112 HOH HOH . 
K 5 HOH A 25 275 130 HOH HOH . 
K 5 HOH A 26 276 131 HOH HOH . 
K 5 HOH A 27 277 147 HOH HOH . 
K 5 HOH A 28 278 148 HOH HOH . 
K 5 HOH A 29 279 157 HOH HOH . 
K 5 HOH A 30 280 158 HOH HOH . 
K 5 HOH A 31 281 160 HOH HOH . 
K 5 HOH A 32 282 161 HOH HOH . 
K 5 HOH A 33 283 164 HOH HOH . 
K 5 HOH A 34 284 167 HOH HOH . 
K 5 HOH A 35 285 168 HOH HOH . 
K 5 HOH A 36 286 169 HOH HOH . 
L 5 HOH B 1 702 2 HOH HOH . 
L 5 HOH B 2 703 9 HOH HOH . 
L 5 HOH B 3 704 19 HOH HOH . 
L 5 HOH B 4 705 20 HOH HOH . 
L 5 HOH B 5 706 21 HOH HOH . 
L 5 HOH B 6 707 24 HOH HOH . 
L 5 HOH B 7 708 25 HOH HOH . 
L 5 HOH B 8 709 27 HOH HOH . 
L 5 HOH B 9 710 33 HOH HOH . 
L 5 HOH B 10 711 37 HOH HOH . 
L 5 HOH B 11 712 39 HOH HOH . 
L 5 HOH B 12 713 44 HOH HOH . 
L 5 HOH B 13 714 46 HOH HOH . 
L 5 HOH B 14 715 50 HOH HOH . 
L 5 HOH B 15 716 59 HOH HOH . 
L 5 HOH B 16 717 69 HOH HOH . 
L 5 HOH B 17 718 70 HOH HOH . 
L 5 HOH B 18 719 71 HOH HOH . 
L 5 HOH B 19 720 75 HOH HOH . 
L 5 HOH B 20 721 76 HOH HOH . 
L 5 HOH B 21 722 79 HOH HOH . 
L 5 HOH B 22 723 80 HOH HOH . 
L 5 HOH B 23 724 86 HOH HOH . 
L 5 HOH B 24 725 87 HOH HOH . 
L 5 HOH B 25 726 88 HOH HOH . 
L 5 HOH B 26 727 91 HOH HOH . 
L 5 HOH B 27 728 94 HOH HOH . 
L 5 HOH B 28 729 95 HOH HOH . 
L 5 HOH B 29 730 103 HOH HOH . 
L 5 HOH B 30 731 104 HOH HOH . 
L 5 HOH B 31 732 106 HOH HOH . 
L 5 HOH B 32 733 110 HOH HOH . 
L 5 HOH B 33 734 111 HOH HOH . 
L 5 HOH B 34 735 114 HOH HOH . 
L 5 HOH B 35 736 115 HOH HOH . 
L 5 HOH B 36 737 116 HOH HOH . 
L 5 HOH B 37 738 121 HOH HOH . 
L 5 HOH B 38 739 122 HOH HOH . 
L 5 HOH B 39 740 124 HOH HOH . 
L 5 HOH B 40 741 125 HOH HOH . 
L 5 HOH B 41 742 126 HOH HOH . 
L 5 HOH B 42 743 143 HOH HOH . 
L 5 HOH B 43 744 146 HOH HOH . 
L 5 HOH B 44 745 149 HOH HOH . 
L 5 HOH B 45 746 150 HOH HOH . 
L 5 HOH B 46 747 151 HOH HOH . 
L 5 HOH B 47 748 152 HOH HOH . 
L 5 HOH B 48 749 159 HOH HOH . 
L 5 HOH B 49 750 162 HOH HOH . 
L 5 HOH B 50 751 163 HOH HOH . 
L 5 HOH B 51 752 171 HOH HOH . 
M 5 HOH C 1 250 1 HOH HOH . 
M 5 HOH C 2 251 3 HOH HOH . 
M 5 HOH C 3 252 5 HOH HOH . 
M 5 HOH C 4 253 8 HOH HOH . 
M 5 HOH C 5 254 10 HOH HOH . 
M 5 HOH C 6 255 12 HOH HOH . 
M 5 HOH C 7 256 13 HOH HOH . 
M 5 HOH C 8 257 14 HOH HOH . 
M 5 HOH C 9 258 15 HOH HOH . 
M 5 HOH C 10 259 17 HOH HOH . 
M 5 HOH C 11 260 18 HOH HOH . 
M 5 HOH C 12 261 30 HOH HOH . 
M 5 HOH C 13 262 40 HOH HOH . 
M 5 HOH C 14 263 43 HOH HOH . 
M 5 HOH C 15 264 49 HOH HOH . 
M 5 HOH C 16 265 52 HOH HOH . 
M 5 HOH C 17 266 53 HOH HOH . 
M 5 HOH C 18 267 55 HOH HOH . 
M 5 HOH C 19 268 56 HOH HOH . 
M 5 HOH C 20 269 61 HOH HOH . 
M 5 HOH C 21 270 67 HOH HOH . 
M 5 HOH C 22 271 72 HOH HOH . 
M 5 HOH C 23 272 73 HOH HOH . 
M 5 HOH C 24 273 77 HOH HOH . 
M 5 HOH C 25 274 83 HOH HOH . 
M 5 HOH C 26 275 84 HOH HOH . 
M 5 HOH C 27 276 89 HOH HOH . 
M 5 HOH C 28 277 90 HOH HOH . 
M 5 HOH C 29 278 96 HOH HOH . 
M 5 HOH C 30 279 100 HOH HOH . 
M 5 HOH C 31 280 102 HOH HOH . 
M 5 HOH C 32 281 107 HOH HOH . 
M 5 HOH C 33 282 117 HOH HOH . 
M 5 HOH C 34 283 118 HOH HOH . 
M 5 HOH C 35 284 120 HOH HOH . 
M 5 HOH C 36 285 127 HOH HOH . 
M 5 HOH C 37 286 128 HOH HOH . 
M 5 HOH C 38 287 134 HOH HOH . 
M 5 HOH C 39 288 135 HOH HOH . 
M 5 HOH C 40 289 136 HOH HOH . 
M 5 HOH C 41 290 137 HOH HOH . 
M 5 HOH C 42 291 141 HOH HOH . 
M 5 HOH C 43 292 142 HOH HOH . 
M 5 HOH C 44 293 144 HOH HOH . 
M 5 HOH C 45 294 145 HOH HOH . 
M 5 HOH C 46 295 153 HOH HOH . 
M 5 HOH C 47 296 154 HOH HOH . 
M 5 HOH C 48 297 155 HOH HOH . 
M 5 HOH C 49 298 156 HOH HOH . 
M 5 HOH C 50 299 165 HOH HOH . 
N 5 HOH D 1 247 4 HOH HOH . 
N 5 HOH D 2 248 6 HOH HOH . 
N 5 HOH D 3 249 7 HOH HOH . 
N 5 HOH D 4 250 11 HOH HOH . 
N 5 HOH D 5 251 16 HOH HOH . 
N 5 HOH D 6 252 23 HOH HOH . 
N 5 HOH D 7 253 29 HOH HOH . 
N 5 HOH D 8 254 31 HOH HOH . 
N 5 HOH D 9 255 32 HOH HOH . 
N 5 HOH D 10 256 38 HOH HOH . 
N 5 HOH D 11 257 42 HOH HOH . 
N 5 HOH D 12 258 64 HOH HOH . 
N 5 HOH D 13 259 68 HOH HOH . 
N 5 HOH D 14 260 74 HOH HOH . 
N 5 HOH D 15 261 78 HOH HOH . 
N 5 HOH D 16 262 81 HOH HOH . 
N 5 HOH D 17 263 82 HOH HOH . 
N 5 HOH D 18 264 85 HOH HOH . 
N 5 HOH D 19 265 98 HOH HOH . 
N 5 HOH D 20 266 99 HOH HOH . 
N 5 HOH D 21 267 101 HOH HOH . 
N 5 HOH D 22 268 108 HOH HOH . 
N 5 HOH D 23 269 109 HOH HOH . 
N 5 HOH D 24 270 113 HOH HOH . 
N 5 HOH D 25 271 119 HOH HOH . 
N 5 HOH D 26 272 123 HOH HOH . 
N 5 HOH D 27 273 129 HOH HOH . 
N 5 HOH D 28 274 132 HOH HOH . 
N 5 HOH D 29 275 133 HOH HOH . 
N 5 HOH D 30 276 138 HOH HOH . 
N 5 HOH D 31 277 139 HOH HOH . 
N 5 HOH D 32 278 140 HOH HOH . 
N 5 HOH D 33 279 166 HOH HOH . 
N 5 HOH D 34 280 170 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . J 3 48.998 -14.039 -24.478 1 61.11 ? C1 MPD 601 B 1 
HETATM 2 C C2 MPD . . . J 3 49.893 -12.917 -24.982 1 60.53 ? C2 MPD 601 B 1 
HETATM 3 O O2 MPD . . . J 3 50.528 -13.323 -26.219 1 59.23 ? O2 MPD 601 B 1 
HETATM 4 C CM MPD . . . J 3 49.035 -11.726 -25.31 1 60.38 ? CM MPD 601 B 1 
HETATM 5 C C3 MPD . . . J 3 51 -12.497 -24.016 1 63.46 ? C3 MPD 601 B 1 
HETATM 6 C C4 MPD . . . J 3 50.78 -12.609 -22.508 1 66.27 ? C4 MPD 601 B 1 
HETATM 7 O O4 MPD . . . J 3 50.419 -13.937 -22.155 1 69.27 ? O4 MPD 601 B 1 
HETATM 8 C C5 MPD . . . J 3 52.082 -12.244 -21.79 1 66.57 ? C5 MPD 601 B 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           8 
#