data_2IOH # _model_server_result.job_id y8PygypD2G4-nlDT5KBlvg _model_server_result.datetime_utc '2024-11-12 20:47:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ioh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":320}' # _entry.id 2IOH # _exptl.entry_id 2IOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2IOH _cell.length_a 251.728 _cell.length_b 251.728 _cell.length_c 156.34 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,I,J,O 2 1,2 D,K,L,P 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 16_545 y+1/3,x-1/3,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 125.864 -72.667614 104.226667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 12 A ASP 12 1_555 F MG MG . A MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc2 A O ALA 14 A ALA 14 1_555 F MG MG . A MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc3 A OD1 ASP 186 A ASP 186 1_555 F MG MG . A MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc4 A OD2 ASP 186 A ASP 186 1_555 F MG MG . A MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc5 E O1 PO4 . A PO4 320 1_555 F MG MG . A MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc6 B OD1 ASP 12 B ASP 12 1_555 H MG MG . B MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc7 B O ALA 14 B ALA 14 1_555 H MG MG . B MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc8 B OD1 ASP 186 B ASP 186 1_555 H MG MG . B MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc9 B OD2 ASP 186 B ASP 186 1_555 H MG MG . B MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc10 G O1 PO4 . B PO4 320 1_555 H MG MG . B MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc11 C OD1 ASP 12 C ASP 12 1_555 J MG MG . C MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc12 C O ALA 14 C ALA 14 1_555 J MG MG . C MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc13 C OD1 ASP 186 C ASP 186 1_555 J MG MG . C MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc14 C OD2 ASP 186 C ASP 186 1_555 J MG MG . C MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc15 I O1 PO4 . C PO4 320 1_555 J MG MG . C MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc16 D OD1 ASP 12 D ASP 12 1_555 L MG MG . D MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc17 D O ALA 14 D ALA 14 1_555 L MG MG . D MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc18 D OD1 ASP 186 D ASP 186 1_555 L MG MG . D MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc19 D OD2 ASP 186 D ASP 186 1_555 L MG MG . D MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc20 K O1 PO4 . D PO4 320 1_555 L MG MG . D MG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 2IOH _atom_sites.fract_transf_matrix[1][1] 0.003973 _atom_sites.fract_transf_matrix[1][2] 0.002294 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 320 320 PO4 PO4 . F 3 MG A 1 321 321 MG MG . G 2 PO4 B 1 320 320 PO4 PO4 . H 3 MG B 1 321 321 MG MG . I 2 PO4 C 1 320 320 PO4 PO4 . J 3 MG C 1 321 321 MG MG . K 2 PO4 D 1 320 320 PO4 PO4 . L 3 MG D 1 321 321 MG MG . M 4 HOH A 1 322 2 HOH HOH . M 4 HOH A 2 323 3 HOH HOH . M 4 HOH A 3 324 5 HOH HOH . M 4 HOH A 4 325 6 HOH HOH . M 4 HOH A 5 326 8 HOH HOH . M 4 HOH A 6 327 9 HOH HOH . M 4 HOH A 7 328 10 HOH HOH . M 4 HOH A 8 329 11 HOH HOH . M 4 HOH A 9 330 12 HOH HOH . M 4 HOH A 10 331 13 HOH HOH . M 4 HOH A 11 332 14 HOH HOH . M 4 HOH A 12 333 15 HOH HOH . M 4 HOH A 13 334 16 HOH HOH . M 4 HOH A 14 335 17 HOH HOH . M 4 HOH A 15 336 18 HOH HOH . M 4 HOH A 16 337 19 HOH HOH . M 4 HOH A 17 338 20 HOH HOH . M 4 HOH A 18 339 1 HOH HOH . M 4 HOH A 19 340 4 HOH HOH . M 4 HOH A 20 341 7 HOH HOH . N 4 HOH B 1 322 1 HOH HOH . N 4 HOH B 2 323 2 HOH HOH . N 4 HOH B 3 324 3 HOH HOH . N 4 HOH B 4 325 4 HOH HOH . N 4 HOH B 5 326 5 HOH HOH . N 4 HOH B 6 327 6 HOH HOH . N 4 HOH B 7 328 7 HOH HOH . N 4 HOH B 8 329 8 HOH HOH . N 4 HOH B 9 330 9 HOH HOH . N 4 HOH B 10 331 10 HOH HOH . N 4 HOH B 11 332 11 HOH HOH . N 4 HOH B 12 333 12 HOH HOH . N 4 HOH B 13 334 13 HOH HOH . N 4 HOH B 14 335 14 HOH HOH . N 4 HOH B 15 336 15 HOH HOH . N 4 HOH B 16 337 16 HOH HOH . N 4 HOH B 17 338 17 HOH HOH . N 4 HOH B 18 339 18 HOH HOH . N 4 HOH B 19 340 19 HOH HOH . N 4 HOH B 20 341 20 HOH HOH . O 4 HOH C 1 322 4 HOH HOH . O 4 HOH C 2 323 7 HOH HOH . O 4 HOH C 3 324 2 HOH HOH . O 4 HOH C 4 325 3 HOH HOH . O 4 HOH C 5 326 5 HOH HOH . O 4 HOH C 6 327 6 HOH HOH . O 4 HOH C 7 328 8 HOH HOH . O 4 HOH C 8 329 9 HOH HOH . O 4 HOH C 9 330 10 HOH HOH . O 4 HOH C 10 331 11 HOH HOH . O 4 HOH C 11 332 12 HOH HOH . O 4 HOH C 12 333 13 HOH HOH . O 4 HOH C 13 334 14 HOH HOH . O 4 HOH C 14 335 15 HOH HOH . O 4 HOH C 15 336 16 HOH HOH . O 4 HOH C 16 337 17 HOH HOH . O 4 HOH C 17 338 18 HOH HOH . O 4 HOH C 18 339 19 HOH HOH . O 4 HOH C 19 340 20 HOH HOH . O 4 HOH C 20 341 1 HOH HOH . P 4 HOH D 1 322 1 HOH HOH . P 4 HOH D 2 323 4 HOH HOH . P 4 HOH D 3 324 7 HOH HOH . P 4 HOH D 4 325 2 HOH HOH . P 4 HOH D 5 326 3 HOH HOH . P 4 HOH D 6 327 5 HOH HOH . P 4 HOH D 7 328 6 HOH HOH . P 4 HOH D 8 329 8 HOH HOH . P 4 HOH D 9 330 9 HOH HOH . P 4 HOH D 10 331 10 HOH HOH . P 4 HOH D 11 332 11 HOH HOH . P 4 HOH D 12 333 12 HOH HOH . P 4 HOH D 13 334 13 HOH HOH . P 4 HOH D 14 335 14 HOH HOH . P 4 HOH D 15 336 15 HOH HOH . P 4 HOH D 16 337 16 HOH HOH . P 4 HOH D 17 338 17 HOH HOH . P 4 HOH D 18 339 18 HOH HOH . P 4 HOH D 19 340 19 HOH HOH . P 4 HOH D 20 341 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . G 2 139.912 175.452 34.303 1 65.74 ? P PO4 320 B 1 HETATM 2 O O1 PO4 . . . G 2 139.96 174.151 35.022 1 66 ? O1 PO4 320 B 1 HETATM 3 O O2 PO4 . . . G 2 140.736 176.45 35.032 1 65.7 ? O2 PO4 320 B 1 HETATM 4 O O3 PO4 . . . G 2 140.446 175.284 32.93 1 67.39 ? O3 PO4 320 B 1 HETATM 5 O O4 PO4 . . . G 2 138.507 175.922 34.227 1 65.44 ? O4 PO4 320 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #