data_2IPP # _model_server_result.job_id ZwuH-qQhtg08dUdOD7hT7w _model_server_result.datetime_utc '2024-12-22 01:59:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ipp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":255}' # _entry.id 2IPP # _exptl.entry_id 2IPP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 111.165 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-PYRIDINETHIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IPP _cell.length_a 85.58 _cell.length_b 85.58 _cell.length_c 34.39 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IPP _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 43 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 26 A CYS 26 1_555 B SG CYS 22 B CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf3 B SG CYS 13 B CYS 62 1_555 B SG CYS 79 B CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? disulf ? disulf4 B SG CYS 14 B CYS 63 1_555 B SG CYS 18 B CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 B SG CYS 51 B CYS 100 1_555 B SG CYS 83 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf6 B SG CYS 59 B CYS 108 1_555 B SG CYS 70 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? covale ? covale1 A SG CYS 29 A CYS 29 1_555 C S2 PYS . A PYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? # _chem_comp.formula 'C5 H5 N S' _chem_comp.formula_weight 111.165 _chem_comp.id PYS _chem_comp.mon_nstd_flag . _chem_comp.name 2-PYRIDINETHIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PYS doub 277 n y N1 C6 PYS sing 278 n y C2 C3 PYS sing 279 n y C2 S2 PYS sing 280 n n C3 C4 PYS doub 281 n y C3 H3 PYS sing 282 n n C4 C5 PYS sing 283 n y C4 H4 PYS sing 284 n n C5 C6 PYS doub 285 n y C5 H5 PYS sing 286 n n C6 H6 PYS sing 287 n n S2 HS2 PYS sing 288 n n # _atom_sites.entry_id 2IPP _atom_sites.fract_transf_matrix[1][1] 0.011685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PYS A 1 255 255 PYS PYS . D 4 HOH A 1 261 261 HOH HOH . D 4 HOH A 2 339 339 HOH HOH . D 4 HOH A 3 354 354 HOH HOH . D 4 HOH A 4 359 359 HOH HOH . D 4 HOH A 5 378 378 HOH HOH . D 4 HOH A 6 404 404 HOH HOH . D 4 HOH A 7 415 415 HOH HOH . D 4 HOH A 8 427 427 HOH HOH . D 4 HOH A 9 443 443 HOH HOH . D 4 HOH A 10 444 444 HOH HOH . D 4 HOH A 11 455 455 HOH HOH . D 4 HOH A 12 473 473 HOH HOH . D 4 HOH A 13 479 479 HOH HOH . D 4 HOH A 14 480 480 HOH HOH . D 4 HOH A 15 493 493 HOH HOH . D 4 HOH A 16 505 505 HOH HOH . D 4 HOH A 17 516 516 HOH HOH . D 4 HOH A 18 555 555 HOH HOH . D 4 HOH A 19 570 570 HOH HOH . D 4 HOH A 20 571 571 HOH HOH . D 4 HOH A 21 573 573 HOH HOH . D 4 HOH A 22 602 602 HOH HOH . D 4 HOH A 23 604 604 HOH HOH . D 4 HOH A 24 618 618 HOH HOH . E 4 HOH B 1 259 259 HOH HOH . E 4 HOH B 2 262 262 HOH HOH . E 4 HOH B 3 264 264 HOH HOH . E 4 HOH B 4 265 265 HOH HOH . E 4 HOH B 5 268 268 HOH HOH . E 4 HOH B 6 269 269 HOH HOH . E 4 HOH B 7 272 272 HOH HOH . E 4 HOH B 8 282 282 HOH HOH . E 4 HOH B 9 283 283 HOH HOH . E 4 HOH B 10 286 286 HOH HOH . E 4 HOH B 11 288 288 HOH HOH . E 4 HOH B 12 289 289 HOH HOH . E 4 HOH B 13 290 290 HOH HOH . E 4 HOH B 14 291 291 HOH HOH . E 4 HOH B 15 292 292 HOH HOH . E 4 HOH B 16 294 294 HOH HOH . E 4 HOH B 17 295 295 HOH HOH . E 4 HOH B 18 299 299 HOH HOH . E 4 HOH B 19 309 309 HOH HOH . E 4 HOH B 20 311 311 HOH HOH . E 4 HOH B 21 315 315 HOH HOH . E 4 HOH B 22 316 316 HOH HOH . E 4 HOH B 23 317 317 HOH HOH . E 4 HOH B 24 320 320 HOH HOH . E 4 HOH B 25 323 323 HOH HOH . E 4 HOH B 26 326 326 HOH HOH . E 4 HOH B 27 327 327 HOH HOH . E 4 HOH B 28 329 329 HOH HOH . E 4 HOH B 29 331 331 HOH HOH . E 4 HOH B 30 334 334 HOH HOH . E 4 HOH B 31 345 345 HOH HOH . E 4 HOH B 32 346 346 HOH HOH . E 4 HOH B 33 350 350 HOH HOH . E 4 HOH B 34 351 351 HOH HOH . E 4 HOH B 35 357 357 HOH HOH . E 4 HOH B 36 361 361 HOH HOH . E 4 HOH B 37 363 363 HOH HOH . E 4 HOH B 38 365 365 HOH HOH . E 4 HOH B 39 366 366 HOH HOH . E 4 HOH B 40 367 367 HOH HOH . E 4 HOH B 41 368 368 HOH HOH . E 4 HOH B 42 373 373 HOH HOH . E 4 HOH B 43 375 375 HOH HOH . E 4 HOH B 44 380 380 HOH HOH . E 4 HOH B 45 382 382 HOH HOH . E 4 HOH B 46 383 383 HOH HOH . E 4 HOH B 47 384 384 HOH HOH . E 4 HOH B 48 385 385 HOH HOH . E 4 HOH B 49 386 386 HOH HOH . E 4 HOH B 50 387 387 HOH HOH . E 4 HOH B 51 398 398 HOH HOH . E 4 HOH B 52 401 401 HOH HOH . E 4 HOH B 53 402 402 HOH HOH . E 4 HOH B 54 405 405 HOH HOH . E 4 HOH B 55 406 406 HOH HOH . E 4 HOH B 56 407 407 HOH HOH . E 4 HOH B 57 409 409 HOH HOH . E 4 HOH B 58 410 410 HOH HOH . E 4 HOH B 59 411 411 HOH HOH . E 4 HOH B 60 412 412 HOH HOH . E 4 HOH B 61 416 416 HOH HOH . E 4 HOH B 62 422 422 HOH HOH . E 4 HOH B 63 423 423 HOH HOH . E 4 HOH B 64 424 424 HOH HOH . E 4 HOH B 65 425 425 HOH HOH . E 4 HOH B 66 426 426 HOH HOH . E 4 HOH B 67 430 430 HOH HOH . E 4 HOH B 68 431 431 HOH HOH . E 4 HOH B 69 436 436 HOH HOH . E 4 HOH B 70 438 438 HOH HOH . E 4 HOH B 71 446 446 HOH HOH . E 4 HOH B 72 449 449 HOH HOH . E 4 HOH B 73 453 453 HOH HOH . E 4 HOH B 74 456 456 HOH HOH . E 4 HOH B 75 459 459 HOH HOH . E 4 HOH B 76 463 463 HOH HOH . E 4 HOH B 77 465 465 HOH HOH . E 4 HOH B 78 466 466 HOH HOH . E 4 HOH B 79 468 468 HOH HOH . E 4 HOH B 80 470 470 HOH HOH . E 4 HOH B 81 471 471 HOH HOH . E 4 HOH B 82 475 475 HOH HOH . E 4 HOH B 83 484 484 HOH HOH . E 4 HOH B 84 487 487 HOH HOH . E 4 HOH B 85 490 490 HOH HOH . E 4 HOH B 86 492 492 HOH HOH . E 4 HOH B 87 497 497 HOH HOH . E 4 HOH B 88 498 498 HOH HOH . E 4 HOH B 89 500 500 HOH HOH . E 4 HOH B 90 508 508 HOH HOH . E 4 HOH B 91 514 514 HOH HOH . E 4 HOH B 92 515 515 HOH HOH . E 4 HOH B 93 520 520 HOH HOH . E 4 HOH B 94 523 523 HOH HOH . E 4 HOH B 95 525 525 HOH HOH . E 4 HOH B 96 528 528 HOH HOH . E 4 HOH B 97 531 531 HOH HOH . E 4 HOH B 98 532 532 HOH HOH . E 4 HOH B 99 536 536 HOH HOH . E 4 HOH B 100 537 537 HOH HOH . E 4 HOH B 101 539 539 HOH HOH . E 4 HOH B 102 541 541 HOH HOH . E 4 HOH B 103 542 542 HOH HOH . E 4 HOH B 104 543 543 HOH HOH . E 4 HOH B 105 545 545 HOH HOH . E 4 HOH B 106 547 547 HOH HOH . E 4 HOH B 107 548 548 HOH HOH . E 4 HOH B 108 550 550 HOH HOH . E 4 HOH B 109 554 554 HOH HOH . E 4 HOH B 110 556 556 HOH HOH . E 4 HOH B 111 560 560 HOH HOH . E 4 HOH B 112 568 568 HOH HOH . E 4 HOH B 113 575 575 HOH HOH . E 4 HOH B 114 576 576 HOH HOH . E 4 HOH B 115 580 580 HOH HOH . E 4 HOH B 116 582 582 HOH HOH . E 4 HOH B 117 585 585 HOH HOH . E 4 HOH B 118 591 591 HOH HOH . E 4 HOH B 119 592 592 HOH HOH . E 4 HOH B 120 593 593 HOH HOH . E 4 HOH B 121 595 595 HOH HOH . E 4 HOH B 122 596 596 HOH HOH . E 4 HOH B 123 597 597 HOH HOH . E 4 HOH B 124 603 603 HOH HOH . E 4 HOH B 125 610 610 HOH HOH . E 4 HOH B 126 611 611 HOH HOH . E 4 HOH B 127 614 614 HOH HOH . E 4 HOH B 128 615 615 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PYS . . . C 3 -14.846 74.744 -52.194 1 31.05 ? N1 PYS 255 A 1 HETATM 2 C C2 PYS . . . C 3 -14.342 73.624 -52.84 1 29.58 ? C2 PYS 255 A 1 HETATM 3 C C3 PYS . . . C 3 -12.948 73.574 -53.118 1 31.31 ? C3 PYS 255 A 1 HETATM 4 C C4 PYS . . . C 3 -12.168 74.609 -52.555 1 32.41 ? C4 PYS 255 A 1 HETATM 5 C C5 PYS . . . C 3 -12.712 75.847 -52.061 1 33.02 ? C5 PYS 255 A 1 HETATM 6 C C6 PYS . . . C 3 -14.131 75.86 -51.92 1 32.29 ? C6 PYS 255 A 1 HETATM 7 S S2 PYS . . . C 3 -15.425 72.169 -52.742 1 28.45 ? S2 PYS 255 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #