data_2IPU
#
_model_server_result.job_id            xNzddfNNfPjUsnVXzy1s5w 
_model_server_result.datetime_utc      '2025-07-31 19:08:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ipu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":909}' 
#
_entry.id    2IPU 
#
_exptl.entry_id    2IPU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         72.32 
_cell.angle_beta          86.08 
_cell.angle_gamma         86.02 
_cell.entry_id            2IPU 
_cell.length_a            43.07 
_cell.length_b            70.335 
_cell.length_c            74.197 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2IPU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K 1 1 
C,D,E,L,M,N,O,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf2 A SG CYS 139 L CYS 133 1_555 A SG CYS 199 L CYS 193 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf3 A SG CYS 139 L CYS 133 1_555 A SG CYS 199 L CYS 193 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 97 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf5 B SG CYS 150 H CYS 140 1_555 B SG CYS 205 H CYS 195 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf6 B SG CYS 150 H CYS 140 1_555 B SG CYS 205 H CYS 195 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 C SG CYS 23 K CYS 23 1_555 C SG CYS 93 K CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
disulf ? disulf8 C SG CYS 139 K CYS 133 1_555 C SG CYS 199 K CYS 193 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf9 C SG CYS 139 K CYS 133 1_555 C SG CYS 199 K CYS 193 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 D SG CYS 22 G CYS 22 1_555 D SG CYS 97 G CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf11 D SG CYS 150 G CYS 140 1_555 D SG CYS 205 G CYS 195 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf12 D SG CYS 150 G CYS 140 1_555 D SG CYS 205 G CYS 195 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.053 ? 
covale ? covale1 A SG CYS 219 L CYS 213 1_555 G C2 ACM . L ACM 1219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale2 B SG CYS 138 H CYS 128 1_555 K C2 ACM . H ACM 1138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? 
covale ? covale3 C SG CYS 219 K CYS 213 1_555 L C2 ACM . K ACM 1219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 137 n n 
C1 C2 GOL sing 138 n n 
C1 H11 GOL sing 139 n n 
C1 H12 GOL sing 140 n n 
O1 HO1 GOL sing 141 n n 
C2 O2 GOL sing 142 n n 
C2 C3 GOL sing 143 n n 
C2 H2 GOL sing 144 n n 
O2 HO2 GOL sing 145 n n 
C3 O3 GOL sing 146 n n 
C3 H31 GOL sing 147 n n 
C3 H32 GOL sing 148 n n 
O3 HO3 GOL sing 149 n n 
#
_atom_sites.entry_id                     2IPU 
_atom_sites.fract_transf_matrix[1][1]    0.023218 
_atom_sites.fract_transf_matrix[1][2]    -0.001615 
_atom_sites.fract_transf_matrix[1][3]    -0.001159 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014252 
_atom_sites.fract_transf_matrix[2][3]    -0.004488 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014163 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 ACM L 1 1219 1219 ACM ACM . 
H 5 GOL L 1 907 907 GOL GOL . 
I 5 GOL L 1 909 909 GOL GOL . 
J 5 GOL L 1 911 911 GOL GOL . 
K 4 ACM H 1 1138 1138 ACM ACM . 
L 4 ACM K 1 1219 1219 ACM ACM . 
M 5 GOL K 1 901 901 GOL GOL . 
N 5 GOL K 1 903 903 GOL GOL . 
O 5 GOL K 1 905 905 GOL GOL . 
P 6 HOH K 1 999 999 HOH HOH . 
Q 6 HOH G 1 227 227 HOH HOH . 
Q 6 HOH G 2 228 228 HOH HOH . 
Q 6 HOH G 3 229 229 HOH HOH . 
Q 6 HOH G 4 230 230 HOH HOH . 
Q 6 HOH G 5 231 231 HOH HOH . 
Q 6 HOH G 6 232 232 HOH HOH . 
Q 6 HOH G 7 233 233 HOH HOH . 
Q 6 HOH G 8 234 234 HOH HOH . 
Q 6 HOH G 9 235 235 HOH HOH . 
Q 6 HOH G 10 236 236 HOH HOH . 
Q 6 HOH G 11 237 237 HOH HOH . 
Q 6 HOH G 12 238 238 HOH HOH . 
Q 6 HOH G 13 239 239 HOH HOH . 
Q 6 HOH G 14 240 240 HOH HOH . 
Q 6 HOH G 15 241 241 HOH HOH . 
Q 6 HOH G 16 242 242 HOH HOH . 
Q 6 HOH G 17 243 243 HOH HOH . 
Q 6 HOH G 18 244 244 HOH HOH . 
Q 6 HOH G 19 245 245 HOH HOH . 
Q 6 HOH G 20 246 246 HOH HOH . 
Q 6 HOH G 21 247 247 HOH HOH . 
Q 6 HOH G 22 248 248 HOH HOH . 
Q 6 HOH G 23 249 249 HOH HOH . 
Q 6 HOH G 24 250 250 HOH HOH . 
Q 6 HOH G 25 251 251 HOH HOH . 
Q 6 HOH G 26 252 252 HOH HOH . 
Q 6 HOH G 27 253 253 HOH HOH . 
Q 6 HOH G 28 254 254 HOH HOH . 
Q 6 HOH G 29 255 255 HOH HOH . 
Q 6 HOH G 30 256 256 HOH HOH . 
Q 6 HOH G 31 257 257 HOH HOH . 
Q 6 HOH G 32 258 258 HOH HOH . 
Q 6 HOH G 33 259 259 HOH HOH . 
Q 6 HOH G 34 260 260 HOH HOH . 
Q 6 HOH G 35 261 261 HOH HOH . 
Q 6 HOH G 36 262 262 HOH HOH . 
Q 6 HOH G 37 263 263 HOH HOH . 
Q 6 HOH G 38 264 264 HOH HOH . 
Q 6 HOH G 39 265 265 HOH HOH . 
Q 6 HOH G 40 266 266 HOH HOH . 
Q 6 HOH G 41 267 267 HOH HOH . 
Q 6 HOH G 42 268 268 HOH HOH . 
Q 6 HOH G 43 269 269 HOH HOH . 
Q 6 HOH G 44 270 270 HOH HOH . 
Q 6 HOH G 45 271 271 HOH HOH . 
Q 6 HOH G 46 272 272 HOH HOH . 
Q 6 HOH G 47 273 273 HOH HOH . 
Q 6 HOH G 48 274 274 HOH HOH . 
Q 6 HOH G 49 275 275 HOH HOH . 
Q 6 HOH G 50 276 276 HOH HOH . 
Q 6 HOH G 51 277 277 HOH HOH . 
Q 6 HOH G 52 278 278 HOH HOH . 
Q 6 HOH G 53 279 279 HOH HOH . 
Q 6 HOH G 54 280 280 HOH HOH . 
Q 6 HOH G 55 281 281 HOH HOH . 
Q 6 HOH G 56 282 282 HOH HOH . 
Q 6 HOH G 57 283 283 HOH HOH . 
Q 6 HOH G 58 284 284 HOH HOH . 
Q 6 HOH G 59 285 285 HOH HOH . 
Q 6 HOH G 60 286 286 HOH HOH . 
Q 6 HOH G 61 287 287 HOH HOH . 
Q 6 HOH G 62 288 288 HOH HOH . 
Q 6 HOH G 63 289 289 HOH HOH . 
Q 6 HOH G 64 290 290 HOH HOH . 
Q 6 HOH G 65 291 291 HOH HOH . 
Q 6 HOH G 66 292 292 HOH HOH . 
Q 6 HOH G 67 293 293 HOH HOH . 
Q 6 HOH G 68 294 294 HOH HOH . 
Q 6 HOH G 69 295 295 HOH HOH . 
Q 6 HOH G 70 296 296 HOH HOH . 
Q 6 HOH G 71 297 297 HOH HOH . 
Q 6 HOH G 72 298 298 HOH HOH . 
Q 6 HOH G 73 299 299 HOH HOH . 
Q 6 HOH G 74 300 300 HOH HOH . 
Q 6 HOH G 75 301 301 HOH HOH . 
Q 6 HOH G 76 302 302 HOH HOH . 
Q 6 HOH G 77 303 303 HOH HOH . 
Q 6 HOH G 78 304 304 HOH HOH . 
Q 6 HOH G 79 305 305 HOH HOH . 
Q 6 HOH G 80 306 306 HOH HOH . 
Q 6 HOH G 81 307 307 HOH HOH . 
Q 6 HOH G 82 308 308 HOH HOH . 
Q 6 HOH G 83 309 309 HOH HOH . 
Q 6 HOH G 84 310 310 HOH HOH . 
Q 6 HOH G 85 311 311 HOH HOH . 
Q 6 HOH G 86 312 312 HOH HOH . 
Q 6 HOH G 87 313 313 HOH HOH . 
Q 6 HOH G 88 314 314 HOH HOH . 
Q 6 HOH G 89 315 315 HOH HOH . 
Q 6 HOH G 90 316 316 HOH HOH . 
Q 6 HOH G 91 317 317 HOH HOH . 
Q 6 HOH G 92 318 318 HOH HOH . 
Q 6 HOH G 93 319 319 HOH HOH . 
Q 6 HOH G 94 320 320 HOH HOH . 
Q 6 HOH G 95 321 321 HOH HOH . 
Q 6 HOH G 96 322 322 HOH HOH . 
Q 6 HOH G 97 323 323 HOH HOH . 
Q 6 HOH G 98 324 324 HOH HOH . 
Q 6 HOH G 99 325 325 HOH HOH . 
Q 6 HOH G 100 326 326 HOH HOH . 
Q 6 HOH G 101 327 327 HOH HOH . 
Q 6 HOH G 102 328 328 HOH HOH . 
Q 6 HOH G 103 329 329 HOH HOH . 
Q 6 HOH G 104 330 330 HOH HOH . 
Q 6 HOH G 105 331 331 HOH HOH . 
Q 6 HOH G 106 332 332 HOH HOH . 
Q 6 HOH G 107 333 333 HOH HOH . 
Q 6 HOH G 108 334 334 HOH HOH . 
Q 6 HOH G 109 335 335 HOH HOH . 
Q 6 HOH G 110 336 336 HOH HOH . 
Q 6 HOH G 111 337 337 HOH HOH . 
Q 6 HOH G 112 338 338 HOH HOH . 
Q 6 HOH G 113 339 339 HOH HOH . 
Q 6 HOH G 114 340 340 HOH HOH . 
Q 6 HOH G 115 341 341 HOH HOH . 
Q 6 HOH G 116 342 342 HOH HOH . 
Q 6 HOH G 117 343 343 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 5 21.296 -27.42 -16.71 1 37.53 ? C1 GOL 909 L 1 
HETATM 2 O O1 GOL . . . I 5 22.667 -27.302 -17.018 1 38.28 ? O1 GOL 909 L 1 
HETATM 3 C C2 GOL . . . I 5 20.695 -26.103 -16.2 1 37.22 ? C2 GOL 909 L 1 
HETATM 4 O O2 GOL . . . I 5 21.618 -25.035 -16.199 1 38.51 ? O2 GOL 909 L 1 
HETATM 5 C C3 GOL . . . I 5 20.141 -26.249 -14.787 1 36.24 ? C3 GOL 909 L 1 
HETATM 6 O O3 GOL . . . I 5 18.944 -26.988 -14.787 1 34.46 ? O3 GOL 909 L 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#