data_2IPW # _model_server_result.job_id JpFddSTPabQ-O7U4_TVfCw _model_server_result.datetime_utc '2024-12-05 04:10:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ipw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":316}' # _entry.id 2IPW # _exptl.entry_id 2IPW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IPW _cell.length_a 50.038 _cell.length_b 66.245 _cell.length_c 92.398 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IPW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 255 n n PA O2A NAP sing 256 n n PA O5B NAP sing 257 n n PA O3 NAP sing 258 n n O2A HOA2 NAP sing 259 n n O5B C5B NAP sing 260 n n C5B C4B NAP sing 261 n n C5B H51A NAP sing 262 n n C5B H52A NAP sing 263 n n C4B O4B NAP sing 264 n n C4B C3B NAP sing 265 n n C4B H4B NAP sing 266 n n O4B C1B NAP sing 267 n n C3B O3B NAP sing 268 n n C3B C2B NAP sing 269 n n C3B H3B NAP sing 270 n n O3B HO3A NAP sing 271 n n C2B O2B NAP sing 272 n n C2B C1B NAP sing 273 n n C2B H2B NAP sing 274 n n O2B P2B NAP sing 275 n n C1B N9A NAP sing 276 n n C1B H1B NAP sing 277 n n N9A C8A NAP sing 278 n y N9A C4A NAP sing 279 n y C8A N7A NAP doub 280 n y C8A H8A NAP sing 281 n n N7A C5A NAP sing 282 n y C5A C6A NAP sing 283 n y C5A C4A NAP doub 284 n y C6A N6A NAP sing 285 n n C6A N1A NAP doub 286 n y N6A H61A NAP sing 287 n n N6A H62A NAP sing 288 n n N1A C2A NAP sing 289 n y C2A N3A NAP doub 290 n y C2A H2A NAP sing 291 n n N3A C4A NAP sing 292 n y O3 PN NAP sing 293 n n PN O1N NAP doub 294 n n PN O2N NAP sing 295 n n PN O5D NAP sing 296 n n O5D C5D NAP sing 297 n n C5D C4D NAP sing 298 n n C5D H51N NAP sing 299 n n C5D H52N NAP sing 300 n n C4D O4D NAP sing 301 n n C4D C3D NAP sing 302 n n C4D H4D NAP sing 303 n n O4D C1D NAP sing 304 n n C3D O3D NAP sing 305 n n C3D C2D NAP sing 306 n n C3D H3D NAP sing 307 n n O3D HO3N NAP sing 308 n n C2D O2D NAP sing 309 n n C2D C1D NAP sing 310 n n C2D H2D NAP sing 311 n n O2D HO2N NAP sing 312 n n C1D N1N NAP sing 313 n n C1D H1D NAP sing 314 n n N1N C2N NAP sing 315 n y N1N C6N NAP doub 316 n y C2N C3N NAP doub 317 n y C2N H2N NAP sing 318 n n C3N C7N NAP sing 319 n n C3N C4N NAP sing 320 n y C7N O7N NAP doub 321 n n C7N N7N NAP sing 322 n n N7N H71N NAP sing 323 n n N7N H72N NAP sing 324 n n C4N C5N NAP doub 325 n y C4N H4N NAP sing 326 n n C5N C6N NAP sing 327 n y C5N H5N NAP sing 328 n n C6N H6N NAP sing 329 n n P2B O1X NAP doub 330 n n P2B O2X NAP sing 331 n n P2B O3X NAP sing 332 n n O2X HOP2 NAP sing 333 n n O3X HOP3 NAP sing 334 n n # _atom_sites.entry_id 2IPW _atom_sites.fract_transf_matrix[1][1] 0.019985 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 316 316 NAP NAP . C 3 2CL A 1 317 317 2CL 2CL . D 4 HOH A 1 405 405 HOH WAT . D 4 HOH A 2 406 406 HOH WAT . D 4 HOH A 3 407 407 HOH WAT . D 4 HOH A 4 409 409 HOH WAT . D 4 HOH A 5 410 410 HOH WAT . D 4 HOH A 6 411 411 HOH WAT . D 4 HOH A 7 412 412 HOH WAT . D 4 HOH A 8 413 413 HOH WAT . D 4 HOH A 9 414 414 HOH WAT . D 4 HOH A 10 415 415 HOH WAT . D 4 HOH A 11 416 416 HOH WAT . D 4 HOH A 12 418 418 HOH WAT . D 4 HOH A 13 419 419 HOH WAT . D 4 HOH A 14 420 420 HOH WAT . D 4 HOH A 15 421 421 HOH WAT . D 4 HOH A 16 422 422 HOH WAT . D 4 HOH A 17 423 423 HOH WAT . D 4 HOH A 18 424 424 HOH WAT . D 4 HOH A 19 425 425 HOH WAT . D 4 HOH A 20 426 426 HOH WAT . D 4 HOH A 21 428 428 HOH WAT . D 4 HOH A 22 430 430 HOH WAT . D 4 HOH A 23 431 431 HOH WAT . D 4 HOH A 24 432 432 HOH WAT . D 4 HOH A 25 434 434 HOH WAT . D 4 HOH A 26 436 436 HOH WAT . D 4 HOH A 27 437 437 HOH WAT . D 4 HOH A 28 438 438 HOH WAT . D 4 HOH A 29 439 439 HOH WAT . D 4 HOH A 30 440 440 HOH WAT . D 4 HOH A 31 441 441 HOH WAT . D 4 HOH A 32 442 442 HOH WAT . D 4 HOH A 33 444 444 HOH WAT . D 4 HOH A 34 445 445 HOH WAT . D 4 HOH A 35 447 447 HOH WAT . D 4 HOH A 36 448 448 HOH WAT . D 4 HOH A 37 450 450 HOH WAT . D 4 HOH A 38 451 451 HOH WAT . D 4 HOH A 39 452 452 HOH WAT . D 4 HOH A 40 453 453 HOH WAT . D 4 HOH A 41 454 454 HOH WAT . D 4 HOH A 42 455 455 HOH WAT . D 4 HOH A 43 456 456 HOH WAT . D 4 HOH A 44 457 457 HOH WAT . D 4 HOH A 45 458 458 HOH WAT . D 4 HOH A 46 459 459 HOH WAT . D 4 HOH A 47 460 460 HOH WAT . D 4 HOH A 48 461 461 HOH WAT . D 4 HOH A 49 462 462 HOH WAT . D 4 HOH A 50 463 463 HOH WAT . D 4 HOH A 51 465 465 HOH WAT . D 4 HOH A 52 466 466 HOH WAT . D 4 HOH A 53 468 468 HOH WAT . D 4 HOH A 54 469 469 HOH WAT . D 4 HOH A 55 470 470 HOH WAT . D 4 HOH A 56 472 472 HOH WAT . D 4 HOH A 57 473 473 HOH WAT . D 4 HOH A 58 474 474 HOH WAT . D 4 HOH A 59 475 475 HOH WAT . D 4 HOH A 60 476 476 HOH WAT . D 4 HOH A 61 477 477 HOH WAT . D 4 HOH A 62 478 478 HOH WAT . D 4 HOH A 63 480 480 HOH WAT . D 4 HOH A 64 481 481 HOH WAT . D 4 HOH A 65 482 482 HOH WAT . D 4 HOH A 66 483 483 HOH WAT . D 4 HOH A 67 485 485 HOH WAT . D 4 HOH A 68 486 486 HOH WAT . D 4 HOH A 69 488 488 HOH WAT . D 4 HOH A 70 489 489 HOH WAT . D 4 HOH A 71 490 490 HOH WAT . D 4 HOH A 72 491 491 HOH WAT . D 4 HOH A 73 492 492 HOH WAT . D 4 HOH A 74 493 493 HOH WAT . D 4 HOH A 75 494 494 HOH WAT . D 4 HOH A 76 495 495 HOH WAT . D 4 HOH A 77 497 497 HOH WAT . D 4 HOH A 78 498 498 HOH WAT . D 4 HOH A 79 499 499 HOH WAT . D 4 HOH A 80 500 500 HOH WAT . D 4 HOH A 81 501 501 HOH WAT . D 4 HOH A 82 502 502 HOH WAT . D 4 HOH A 83 503 503 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 23.535 27.769 72.737 1 8.53 ? PA NAP 316 A 1 HETATM 2 O O1A NAP . . . B 2 24.458 28.74 72.136 1 10.79 ? O1A NAP 316 A 1 HETATM 3 O O2A NAP . . . B 2 22.618 28.203 73.792 1 11.42 ? O2A NAP 316 A 1 HETATM 4 O O5B NAP . . . B 2 24.365 26.537 73.299 1 10.14 ? O5B NAP 316 A 1 HETATM 5 C C5B NAP . . . B 2 23.695 25.344 73.73 1 9.7 ? C5B NAP 316 A 1 HETATM 6 C C4B NAP . . . B 2 24.817 24.409 74.147 1 8.42 ? C4B NAP 316 A 1 HETATM 7 O O4B NAP . . . B 2 25.638 25.082 75.108 1 11.48 ? O4B NAP 316 A 1 HETATM 8 C C3B NAP . . . B 2 24.418 23.101 74.783 1 6.23 ? C3B NAP 316 A 1 HETATM 9 O O3B NAP . . . B 2 25.415 22.157 74.423 1 11.28 ? O3B NAP 316 A 1 HETATM 10 C C2B NAP . . . B 2 24.613 23.29 76.261 1 11.85 ? C2B NAP 316 A 1 HETATM 11 O O2B NAP . . . B 2 24.922 22.029 76.881 1 12.47 ? O2B NAP 316 A 1 HETATM 12 C C1B NAP . . . B 2 25.786 24.244 76.266 1 11.59 ? C1B NAP 316 A 1 HETATM 13 N N9A NAP . . . B 2 25.75 25.1 77.473 1 13.15 ? N9A NAP 316 A 1 HETATM 14 C C8A NAP . . . B 2 24.673 25.675 78.047 1 9.04 ? C8A NAP 316 A 1 HETATM 15 N N7A NAP . . . B 2 25.012 26.289 79.187 1 12.33 ? N7A NAP 316 A 1 HETATM 16 C C5A NAP . . . B 2 26.321 26.083 79.282 1 12.94 ? C5A NAP 316 A 1 HETATM 17 C C6A NAP . . . B 2 27.123 26.438 80.358 1 13.13 ? C6A NAP 316 A 1 HETATM 18 N N6A NAP . . . B 2 26.706 27.242 81.332 1 13.6 ? N6A NAP 316 A 1 HETATM 19 N N1A NAP . . . B 2 28.409 26.029 80.301 1 16 ? N1A NAP 316 A 1 HETATM 20 C C2A NAP . . . B 2 28.892 25.347 79.259 1 11.63 ? C2A NAP 316 A 1 HETATM 21 N N3A NAP . . . B 2 28.113 25.012 78.235 1 11.06 ? N3A NAP 316 A 1 HETATM 22 C C4A NAP . . . B 2 26.813 25.35 78.233 1 12.76 ? C4A NAP 316 A 1 HETATM 23 O O3 NAP . . . B 2 22.783 27.008 71.536 1 14.38 ? O3 NAP 316 A 1 HETATM 24 P PN NAP . . . B 2 21.479 27.026 70.558 1 10.84 ? PN NAP 316 A 1 HETATM 25 O O1N NAP . . . B 2 20.671 25.875 71.026 1 14.94 ? O1N NAP 316 A 1 HETATM 26 O O2N NAP . . . B 2 21.946 27.018 69.161 1 12.5 ? O2N NAP 316 A 1 HETATM 27 O O5D NAP . . . B 2 20.71 28.437 70.768 1 8.88 ? O5D NAP 316 A 1 HETATM 28 C C5D NAP . . . B 2 19.795 28.667 71.851 1 9.98 ? C5D NAP 316 A 1 HETATM 29 C C4D NAP . . . B 2 18.335 28.567 71.428 1 11.66 ? C4D NAP 316 A 1 HETATM 30 O O4D NAP . . . B 2 18.091 29.497 70.376 1 9 ? O4D NAP 316 A 1 HETATM 31 C C3D NAP . . . B 2 17.927 27.239 70.832 1 10.11 ? C3D NAP 316 A 1 HETATM 32 O O3D NAP . . . B 2 17.8 26.163 71.757 1 13.16 ? O3D NAP 316 A 1 HETATM 33 C C2D NAP . . . B 2 16.627 27.645 70.199 1 12.38 ? C2D NAP 316 A 1 HETATM 34 O O2D NAP . . . B 2 15.677 27.797 71.243 1 11.52 ? O2D NAP 316 A 1 HETATM 35 C C1D NAP . . . B 2 16.988 29.001 69.625 1 10.97 ? C1D NAP 316 A 1 HETATM 36 N N1N NAP . . . B 2 17.43 28.924 68.215 1 7.73 ? N1N NAP 316 A 1 HETATM 37 C C2N NAP . . . B 2 16.616 29.542 67.273 1 7.64 ? C2N NAP 316 A 1 HETATM 38 C C3N NAP . . . B 2 16.942 29.485 65.928 1 5.52 ? C3N NAP 316 A 1 HETATM 39 C C7N NAP . . . B 2 16.039 30.136 64.9 1 4.22 ? C7N NAP 316 A 1 HETATM 40 O O7N NAP . . . B 2 16.218 29.91 63.714 1 11.09 ? O7N NAP 316 A 1 HETATM 41 N N7N NAP . . . B 2 15.097 30.954 65.348 1 8.48 ? N7N NAP 316 A 1 HETATM 42 C C4N NAP . . . B 2 18.095 28.808 65.536 1 5.76 ? C4N NAP 316 A 1 HETATM 43 C C5N NAP . . . B 2 18.929 28.194 66.465 1 6.32 ? C5N NAP 316 A 1 HETATM 44 C C6N NAP . . . B 2 18.592 28.253 67.809 1 5.92 ? C6N NAP 316 A 1 HETATM 45 P P2B NAP . . . B 2 23.806 21.238 77.711 1 13.36 ? P2B NAP 316 A 1 HETATM 46 O O1X NAP . . . B 2 22.517 21.497 77.043 1 12.05 ? O1X NAP 316 A 1 HETATM 47 O O2X NAP . . . B 2 24.285 19.862 77.546 1 14.65 ? O2X NAP 316 A 1 HETATM 48 O O3X NAP . . . B 2 23.941 21.807 79.071 1 12.58 ? O3X NAP 316 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #