data_2IQD # _model_server_result.job_id sAuATjGPVaFcc_XLTscdYA _model_server_result.datetime_utc '2024-12-04 22:19:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2iqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":316}' # _entry.id 2IQD # _exptl.entry_id 2IQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IQD _cell.length_a 50.011 _cell.length_b 67.023 _cell.length_c 91.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 263 n n PA O2A NAP sing 264 n n PA O5B NAP sing 265 n n PA O3 NAP sing 266 n n O2A HOA2 NAP sing 267 n n O5B C5B NAP sing 268 n n C5B C4B NAP sing 269 n n C5B H51A NAP sing 270 n n C5B H52A NAP sing 271 n n C4B O4B NAP sing 272 n n C4B C3B NAP sing 273 n n C4B H4B NAP sing 274 n n O4B C1B NAP sing 275 n n C3B O3B NAP sing 276 n n C3B C2B NAP sing 277 n n C3B H3B NAP sing 278 n n O3B HO3A NAP sing 279 n n C2B O2B NAP sing 280 n n C2B C1B NAP sing 281 n n C2B H2B NAP sing 282 n n O2B P2B NAP sing 283 n n C1B N9A NAP sing 284 n n C1B H1B NAP sing 285 n n N9A C8A NAP sing 286 n y N9A C4A NAP sing 287 n y C8A N7A NAP doub 288 n y C8A H8A NAP sing 289 n n N7A C5A NAP sing 290 n y C5A C6A NAP sing 291 n y C5A C4A NAP doub 292 n y C6A N6A NAP sing 293 n n C6A N1A NAP doub 294 n y N6A H61A NAP sing 295 n n N6A H62A NAP sing 296 n n N1A C2A NAP sing 297 n y C2A N3A NAP doub 298 n y C2A H2A NAP sing 299 n n N3A C4A NAP sing 300 n y O3 PN NAP sing 301 n n PN O1N NAP doub 302 n n PN O2N NAP sing 303 n n PN O5D NAP sing 304 n n O5D C5D NAP sing 305 n n C5D C4D NAP sing 306 n n C5D H51N NAP sing 307 n n C5D H52N NAP sing 308 n n C4D O4D NAP sing 309 n n C4D C3D NAP sing 310 n n C4D H4D NAP sing 311 n n O4D C1D NAP sing 312 n n C3D O3D NAP sing 313 n n C3D C2D NAP sing 314 n n C3D H3D NAP sing 315 n n O3D HO3N NAP sing 316 n n C2D O2D NAP sing 317 n n C2D C1D NAP sing 318 n n C2D H2D NAP sing 319 n n O2D HO2N NAP sing 320 n n C1D N1N NAP sing 321 n n C1D H1D NAP sing 322 n n N1N C2N NAP sing 323 n y N1N C6N NAP doub 324 n y C2N C3N NAP doub 325 n y C2N H2N NAP sing 326 n n C3N C7N NAP sing 327 n n C3N C4N NAP sing 328 n y C7N O7N NAP doub 329 n n C7N N7N NAP sing 330 n n N7N H71N NAP sing 331 n n N7N H72N NAP sing 332 n n C4N C5N NAP doub 333 n y C4N H4N NAP sing 334 n n C5N C6N NAP sing 335 n y C5N H5N NAP sing 336 n n C6N H6N NAP sing 337 n n P2B O1X NAP doub 338 n n P2B O2X NAP sing 339 n n P2B O3X NAP sing 340 n n O2X HOP2 NAP sing 341 n n O3X HOP3 NAP sing 342 n n # _atom_sites.entry_id 2IQD _atom_sites.fract_transf_matrix[1][1] 0.019996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01492 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 316 316 NAP NAP . C 3 LPA A 1 351 351 LPA LPA . D 4 HOH A 1 401 401 HOH HOH . D 4 HOH A 2 402 402 HOH HOH . D 4 HOH A 3 403 403 HOH HOH . D 4 HOH A 4 404 404 HOH HOH . D 4 HOH A 5 405 405 HOH HOH . D 4 HOH A 6 406 406 HOH HOH . D 4 HOH A 7 407 407 HOH HOH . D 4 HOH A 8 408 408 HOH HOH . D 4 HOH A 9 409 409 HOH HOH . D 4 HOH A 10 410 410 HOH HOH . D 4 HOH A 11 411 411 HOH HOH . D 4 HOH A 12 412 412 HOH HOH . D 4 HOH A 13 413 413 HOH HOH . D 4 HOH A 14 414 414 HOH HOH . D 4 HOH A 15 415 415 HOH HOH . D 4 HOH A 16 416 416 HOH HOH . D 4 HOH A 17 417 417 HOH HOH . D 4 HOH A 18 418 418 HOH HOH . D 4 HOH A 19 419 419 HOH HOH . D 4 HOH A 20 420 420 HOH HOH . D 4 HOH A 21 421 421 HOH HOH . D 4 HOH A 22 422 422 HOH HOH . D 4 HOH A 23 423 423 HOH HOH . D 4 HOH A 24 424 424 HOH HOH . D 4 HOH A 25 425 425 HOH HOH . D 4 HOH A 26 426 426 HOH HOH . D 4 HOH A 27 427 427 HOH HOH . D 4 HOH A 28 428 428 HOH HOH . D 4 HOH A 29 429 429 HOH HOH . D 4 HOH A 30 430 430 HOH HOH . D 4 HOH A 31 431 431 HOH HOH . D 4 HOH A 32 432 432 HOH HOH . D 4 HOH A 33 433 433 HOH HOH . D 4 HOH A 34 434 434 HOH HOH . D 4 HOH A 35 435 435 HOH HOH . D 4 HOH A 36 436 436 HOH HOH . D 4 HOH A 37 437 437 HOH HOH . D 4 HOH A 38 438 438 HOH HOH . D 4 HOH A 39 439 439 HOH HOH . D 4 HOH A 40 440 440 HOH HOH . D 4 HOH A 41 441 441 HOH HOH . D 4 HOH A 42 442 442 HOH HOH . D 4 HOH A 43 443 443 HOH HOH . D 4 HOH A 44 444 444 HOH HOH . D 4 HOH A 45 445 445 HOH HOH . D 4 HOH A 46 446 446 HOH HOH . D 4 HOH A 47 447 447 HOH HOH . D 4 HOH A 48 448 448 HOH HOH . D 4 HOH A 49 449 449 HOH HOH . D 4 HOH A 50 450 450 HOH HOH . D 4 HOH A 51 451 451 HOH HOH . D 4 HOH A 52 453 453 HOH HOH . D 4 HOH A 53 454 454 HOH HOH . D 4 HOH A 54 455 455 HOH HOH . D 4 HOH A 55 456 456 HOH HOH . D 4 HOH A 56 457 457 HOH HOH . D 4 HOH A 57 458 458 HOH HOH . D 4 HOH A 58 459 459 HOH HOH . D 4 HOH A 59 460 460 HOH HOH . D 4 HOH A 60 461 461 HOH HOH . D 4 HOH A 61 462 462 HOH HOH . D 4 HOH A 62 463 463 HOH HOH . D 4 HOH A 63 464 464 HOH HOH . D 4 HOH A 64 465 465 HOH HOH . D 4 HOH A 65 500 500 HOH HOH . D 4 HOH A 66 501 501 HOH HOH . D 4 HOH A 67 503 503 HOH HOH . D 4 HOH A 68 505 505 HOH HOH . D 4 HOH A 69 506 506 HOH HOH . D 4 HOH A 70 507 507 HOH HOH . D 4 HOH A 71 508 508 HOH HOH . D 4 HOH A 72 510 510 HOH HOH . D 4 HOH A 73 511 511 HOH HOH . D 4 HOH A 74 512 512 HOH HOH . D 4 HOH A 75 514 514 HOH HOH . D 4 HOH A 76 515 515 HOH HOH . D 4 HOH A 77 516 516 HOH HOH . D 4 HOH A 78 517 517 HOH HOH . D 4 HOH A 79 518 518 HOH HOH . D 4 HOH A 80 519 519 HOH HOH . D 4 HOH A 81 520 520 HOH HOH . D 4 HOH A 82 521 521 HOH HOH . D 4 HOH A 83 522 522 HOH HOH . D 4 HOH A 84 523 523 HOH HOH . D 4 HOH A 85 524 524 HOH HOH . D 4 HOH A 86 526 526 HOH HOH . D 4 HOH A 87 527 527 HOH HOH . D 4 HOH A 88 528 528 HOH HOH . D 4 HOH A 89 529 529 HOH HOH . D 4 HOH A 90 530 530 HOH HOH . D 4 HOH A 91 531 531 HOH HOH . D 4 HOH A 92 532 532 HOH HOH . D 4 HOH A 93 533 533 HOH HOH . D 4 HOH A 94 534 534 HOH HOH . D 4 HOH A 95 535 535 HOH HOH . D 4 HOH A 96 536 536 HOH HOH . D 4 HOH A 97 537 537 HOH HOH . D 4 HOH A 98 538 538 HOH HOH . D 4 HOH A 99 540 540 HOH HOH . D 4 HOH A 100 541 541 HOH HOH . D 4 HOH A 101 542 542 HOH HOH . D 4 HOH A 102 543 543 HOH HOH . D 4 HOH A 103 544 544 HOH HOH . D 4 HOH A 104 545 545 HOH HOH . D 4 HOH A 105 546 546 HOH HOH . D 4 HOH A 106 547 547 HOH HOH . D 4 HOH A 107 548 548 HOH HOH . D 4 HOH A 108 549 549 HOH HOH . D 4 HOH A 109 550 550 HOH HOH . D 4 HOH A 110 551 551 HOH HOH . D 4 HOH A 111 553 553 HOH HOH . D 4 HOH A 112 554 554 HOH HOH . D 4 HOH A 113 555 555 HOH HOH . D 4 HOH A 114 556 556 HOH HOH . D 4 HOH A 115 557 557 HOH HOH . D 4 HOH A 116 558 558 HOH HOH . D 4 HOH A 117 559 559 HOH HOH . D 4 HOH A 118 560 560 HOH HOH . D 4 HOH A 119 561 561 HOH HOH . D 4 HOH A 120 562 562 HOH HOH . D 4 HOH A 121 563 563 HOH HOH . D 4 HOH A 122 564 564 HOH HOH . D 4 HOH A 123 565 565 HOH HOH . D 4 HOH A 124 566 566 HOH HOH . D 4 HOH A 125 567 567 HOH HOH . D 4 HOH A 126 568 568 HOH HOH . D 4 HOH A 127 569 569 HOH HOH . D 4 HOH A 128 570 570 HOH HOH . D 4 HOH A 129 571 571 HOH HOH . D 4 HOH A 130 572 572 HOH HOH . D 4 HOH A 131 573 573 HOH HOH . D 4 HOH A 132 574 574 HOH HOH . D 4 HOH A 133 575 575 HOH HOH . D 4 HOH A 134 576 576 HOH HOH . D 4 HOH A 135 577 577 HOH HOH . D 4 HOH A 136 578 578 HOH HOH . D 4 HOH A 137 579 579 HOH HOH . D 4 HOH A 138 580 580 HOH HOH . D 4 HOH A 139 581 581 HOH HOH . D 4 HOH A 140 582 582 HOH HOH . D 4 HOH A 141 583 583 HOH HOH . D 4 HOH A 142 585 585 HOH HOH . D 4 HOH A 143 587 587 HOH HOH . D 4 HOH A 144 588 588 HOH HOH . D 4 HOH A 145 589 589 HOH HOH . D 4 HOH A 146 590 590 HOH HOH . D 4 HOH A 147 591 591 HOH HOH . D 4 HOH A 148 592 592 HOH HOH . D 4 HOH A 149 593 593 HOH HOH . D 4 HOH A 150 594 594 HOH HOH . D 4 HOH A 151 595 595 HOH HOH . D 4 HOH A 152 596 596 HOH HOH . D 4 HOH A 153 597 597 HOH HOH . D 4 HOH A 154 598 598 HOH HOH . D 4 HOH A 155 599 599 HOH HOH . D 4 HOH A 156 600 600 HOH HOH . D 4 HOH A 157 601 601 HOH HOH . D 4 HOH A 158 602 602 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 23.54 28.087 72.442 1 5.78 ? PA NAP 316 A 1 HETATM 2 O O1A NAP . . . B 2 24.423 29.125 71.91 1 3.85 ? O1A NAP 316 A 1 HETATM 3 O O2A NAP . . . B 2 22.515 28.476 73.413 1 9.15 ? O2A NAP 316 A 1 HETATM 4 O O5B NAP . . . B 2 24.413 26.879 73.012 1 5.16 ? O5B NAP 316 A 1 HETATM 5 C C5B NAP . . . B 2 23.813 25.684 73.511 1 4.28 ? C5B NAP 316 A 1 HETATM 6 C C4B NAP . . . B 2 24.996 24.795 73.801 1 2.96 ? C4B NAP 316 A 1 HETATM 7 O O4B NAP . . . B 2 25.858 25.423 74.777 1 4.07 ? O4B NAP 316 A 1 HETATM 8 C C3B NAP . . . B 2 24.58 23.466 74.365 1 2.92 ? C3B NAP 316 A 1 HETATM 9 O O3B NAP . . . B 2 25.527 22.487 73.949 1 8.44 ? O3B NAP 316 A 1 HETATM 10 C C2B NAP . . . B 2 24.739 23.633 75.851 1 5.76 ? C2B NAP 316 A 1 HETATM 11 O O2B NAP . . . B 2 25.051 22.359 76.417 1 6.09 ? O2B NAP 316 A 1 HETATM 12 C C1B NAP . . . B 2 25.916 24.595 75.955 1 6.28 ? C1B NAP 316 A 1 HETATM 13 N N9A NAP . . . B 2 25.907 25.458 77.169 1 3.78 ? N9A NAP 316 A 1 HETATM 14 C C8A NAP . . . B 2 24.856 26.088 77.722 1 5.08 ? C8A NAP 316 A 1 HETATM 15 N N7A NAP . . . B 2 25.233 26.727 78.832 1 9.04 ? N7A NAP 316 A 1 HETATM 16 C C5A NAP . . . B 2 26.525 26.478 78.953 1 8.53 ? C5A NAP 316 A 1 HETATM 17 C C6A NAP . . . B 2 27.364 26.857 80.009 1 11.64 ? C6A NAP 316 A 1 HETATM 18 N N6A NAP . . . B 2 26.95 27.593 81.034 1 7.57 ? N6A NAP 316 A 1 HETATM 19 N N1A NAP . . . B 2 28.649 26.414 79.951 1 12.79 ? N1A NAP 316 A 1 HETATM 20 C C2A NAP . . . B 2 29.087 25.646 78.954 1 8.82 ? C2A NAP 316 A 1 HETATM 21 N N3A NAP . . . B 2 28.26 25.286 77.966 1 8.58 ? N3A NAP 316 A 1 HETATM 22 C C4A NAP . . . B 2 26.972 25.68 77.929 1 6.94 ? C4A NAP 316 A 1 HETATM 23 O O3 NAP . . . B 2 22.891 27.386 71.168 1 6.73 ? O3 NAP 316 A 1 HETATM 24 P PN NAP . . . B 2 21.562 27.418 70.29 1 6.32 ? PN NAP 316 A 1 HETATM 25 O O1N NAP . . . B 2 20.708 26.342 70.825 1 9.4 ? O1N NAP 316 A 1 HETATM 26 O O2N NAP . . . B 2 22.015 27.363 68.905 1 7.45 ? O2N NAP 316 A 1 HETATM 27 O O5D NAP . . . B 2 20.909 28.865 70.581 1 8.06 ? O5D NAP 316 A 1 HETATM 28 C C5D NAP . . . B 2 19.933 29.04 71.625 1 5.73 ? C5D NAP 316 A 1 HETATM 29 C C4D NAP . . . B 2 18.52 28.927 71.09 1 5.98 ? C4D NAP 316 A 1 HETATM 30 O O4D NAP . . . B 2 18.342 29.907 70.068 1 4.79 ? O4D NAP 316 A 1 HETATM 31 C C3D NAP . . . B 2 18.108 27.601 70.456 1 4.08 ? C3D NAP 316 A 1 HETATM 32 O O3D NAP . . . B 2 17.854 26.54 71.398 1 4.86 ? O3D NAP 316 A 1 HETATM 33 C C2D NAP . . . B 2 16.825 28.114 69.834 1 5.28 ? C2D NAP 316 A 1 HETATM 34 O O2D NAP . . . B 2 15.79 28.231 70.802 1 4.27 ? O2D NAP 316 A 1 HETATM 35 C C1D NAP . . . B 2 17.211 29.484 69.307 1 3.34 ? C1D NAP 316 A 1 HETATM 36 N N1N NAP . . . B 2 17.545 29.407 67.863 1 2 ? N1N NAP 316 A 1 HETATM 37 C C2N NAP . . . B 2 16.651 29.911 66.922 1 2 ? C2N NAP 316 A 1 HETATM 38 C C3N NAP . . . B 2 16.96 29.88 65.558 1 4.5 ? C3N NAP 316 A 1 HETATM 39 C C7N NAP . . . B 2 16.048 30.553 64.537 1 4.13 ? C7N NAP 316 A 1 HETATM 40 O O7N NAP . . . B 2 16.218 30.416 63.323 1 7.39 ? O7N NAP 316 A 1 HETATM 41 N N7N NAP . . . B 2 15.112 31.354 65.055 1 4.08 ? N7N NAP 316 A 1 HETATM 42 C C4N NAP . . . B 2 18.161 29.293 65.142 1 7.06 ? C4N NAP 316 A 1 HETATM 43 C C5N NAP . . . B 2 19.056 28.768 66.069 1 5.51 ? C5N NAP 316 A 1 HETATM 44 C C6N NAP . . . B 2 18.756 28.846 67.428 1 4.3 ? C6N NAP 316 A 1 HETATM 45 P P2B NAP . . . B 2 23.938 21.614 77.289 1 8.92 ? P2B NAP 316 A 1 HETATM 46 O O1X NAP . . . B 2 22.615 21.905 76.697 1 9.43 ? O1X NAP 316 A 1 HETATM 47 O O2X NAP . . . B 2 24.411 20.224 77.128 1 11.76 ? O2X NAP 316 A 1 HETATM 48 O O3X NAP . . . B 2 24.135 22.222 78.627 1 8.59 ? O3X NAP 316 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #