data_2IRV # _model_server_result.job_id K7zI42aMcybPIexN82LsaQ _model_server_result.datetime_utc '2025-01-28 09:07:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2irv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":3840}' # _entry.id 2IRV # _exptl.entry_id 2IRV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.03 _cell.angle_gamma 90 _cell.entry_id 2IRV _cell.length_a 49.82 _cell.length_b 69.35 _cell.length_c 67.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IRV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,Y 1 1 B,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 173 n n N1 CM1 LDA sing 174 n n N1 CM2 LDA sing 175 n n N1 C1 LDA sing 176 n n CM1 HM11 LDA sing 177 n n CM1 HM12 LDA sing 178 n n CM1 HM13 LDA sing 179 n n CM2 HM21 LDA sing 180 n n CM2 HM22 LDA sing 181 n n CM2 HM23 LDA sing 182 n n C1 C2 LDA sing 183 n n C1 H11 LDA sing 184 n n C1 H12 LDA sing 185 n n C2 C3 LDA sing 186 n n C2 H21 LDA sing 187 n n C2 H22 LDA sing 188 n n C3 C4 LDA sing 189 n n C3 H31 LDA sing 190 n n C3 H32 LDA sing 191 n n C4 C5 LDA sing 192 n n C4 H41 LDA sing 193 n n C4 H42 LDA sing 194 n n C5 C6 LDA sing 195 n n C5 H51 LDA sing 196 n n C5 H52 LDA sing 197 n n C6 C7 LDA sing 198 n n C6 H61 LDA sing 199 n n C6 H62 LDA sing 200 n n C7 C8 LDA sing 201 n n C7 H71 LDA sing 202 n n C7 H72 LDA sing 203 n n C8 C9 LDA sing 204 n n C8 H81 LDA sing 205 n n C8 H82 LDA sing 206 n n C9 C10 LDA sing 207 n n C9 H91 LDA sing 208 n n C9 H92 LDA sing 209 n n C10 C11 LDA sing 210 n n C10 H101 LDA sing 211 n n C10 H102 LDA sing 212 n n C11 C12 LDA sing 213 n n C11 H111 LDA sing 214 n n C11 H112 LDA sing 215 n n C12 H121 LDA sing 216 n n C12 H122 LDA sing 217 n n C12 H123 LDA sing 218 n n # _atom_sites.entry_id 2IRV _atom_sites.fract_transf_matrix[1][1] 0.020072 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003913 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LDA A 1 3842 3842 LDA LDA . D 2 LDA A 1 3845 3845 LDA LDA . E 2 LDA A 1 3850 3850 LDA LDA . F 3 PO4 B 1 5156 5156 PO4 PO4 . G 2 LDA B 1 3834 3834 LDA LDA . H 2 LDA B 1 3835 3835 LDA LDA . I 2 LDA B 1 3836 3836 LDA LDA . J 2 LDA B 1 3837 3837 LDA LDA . K 2 LDA B 1 3838 3838 LDA LDA . L 2 LDA B 1 3839 3839 LDA LDA . M 2 LDA B 1 3840 3840 LDA LDA . N 2 LDA B 1 3841 3841 LDA LDA . O 2 LDA B 1 3843 3843 LDA LDA . P 2 LDA B 1 3844 3844 LDA LDA . Q 2 LDA B 1 3846 3846 LDA LDA . R 2 LDA B 1 3847 3847 LDA LDA . S 2 LDA B 1 3848 3848 LDA LDA . T 4 LMT B 1 3888 3888 LMT LMT . U 5 PGV B 1 5136 5136 PGV PGV . V 5 PGV B 1 5137 5137 PGV PGV . W 5 PGV B 1 5138 5138 PGV PGV . X 5 PGV B 1 5139 5139 PGV PGV . Y 6 HOH A 1 20 20 HOH TIP . Y 6 HOH A 2 21 21 HOH TIP . Y 6 HOH A 3 22 22 HOH TIP . Y 6 HOH A 4 23 23 HOH TIP . Y 6 HOH A 5 25 25 HOH TIP . Y 6 HOH A 6 38 38 HOH TIP . Y 6 HOH A 7 39 39 HOH TIP . Y 6 HOH A 8 40 40 HOH TIP . Y 6 HOH A 9 41 41 HOH TIP . Y 6 HOH A 10 42 42 HOH TIP . Y 6 HOH A 11 43 43 HOH TIP . Y 6 HOH A 12 44 44 HOH TIP . Y 6 HOH A 13 45 45 HOH TIP . Y 6 HOH A 14 46 46 HOH TIP . Y 6 HOH A 15 48 48 HOH TIP . Y 6 HOH A 16 49 49 HOH TIP . Y 6 HOH A 17 50 50 HOH TIP . Y 6 HOH A 18 51 51 HOH TIP . Y 6 HOH A 19 52 52 HOH TIP . Y 6 HOH A 20 53 53 HOH TIP . Y 6 HOH A 21 56 56 HOH TIP . Y 6 HOH A 22 65 65 HOH TIP . Y 6 HOH A 23 66 66 HOH TIP . Y 6 HOH A 24 67 67 HOH TIP . Y 6 HOH A 25 80 80 HOH TIP . Z 6 HOH B 1 1 1 HOH TIP . Z 6 HOH B 2 2 2 HOH TIP . Z 6 HOH B 3 3 3 HOH TIP . Z 6 HOH B 4 4 4 HOH TIP . Z 6 HOH B 5 5 5 HOH TIP . Z 6 HOH B 6 6 6 HOH TIP . Z 6 HOH B 7 7 7 HOH TIP . Z 6 HOH B 8 8 8 HOH TIP . Z 6 HOH B 9 9 9 HOH TIP . Z 6 HOH B 10 10 10 HOH TIP . Z 6 HOH B 11 11 11 HOH TIP . Z 6 HOH B 12 12 12 HOH TIP . Z 6 HOH B 13 13 13 HOH TIP . Z 6 HOH B 14 14 14 HOH TIP . Z 6 HOH B 15 15 15 HOH TIP . Z 6 HOH B 16 16 16 HOH TIP . Z 6 HOH B 17 17 17 HOH TIP . Z 6 HOH B 18 18 18 HOH TIP . Z 6 HOH B 19 19 19 HOH TIP . Z 6 HOH B 20 24 24 HOH TIP . Z 6 HOH B 21 26 26 HOH TIP . Z 6 HOH B 22 27 27 HOH TIP . Z 6 HOH B 23 28 28 HOH TIP . Z 6 HOH B 24 29 29 HOH TIP . Z 6 HOH B 25 30 30 HOH TIP . Z 6 HOH B 26 31 31 HOH TIP . Z 6 HOH B 27 32 32 HOH TIP . Z 6 HOH B 28 33 33 HOH TIP . Z 6 HOH B 29 34 34 HOH TIP . Z 6 HOH B 30 35 35 HOH TIP . Z 6 HOH B 31 36 36 HOH TIP . Z 6 HOH B 32 37 37 HOH TIP . Z 6 HOH B 33 47 47 HOH TIP . Z 6 HOH B 34 54 54 HOH TIP . Z 6 HOH B 35 55 55 HOH TIP . Z 6 HOH B 36 57 57 HOH TIP . Z 6 HOH B 37 58 58 HOH TIP . Z 6 HOH B 38 59 59 HOH TIP . Z 6 HOH B 39 60 60 HOH TIP . Z 6 HOH B 40 61 61 HOH TIP . Z 6 HOH B 41 62 62 HOH TIP . Z 6 HOH B 42 63 63 HOH TIP . Z 6 HOH B 43 64 64 HOH TIP . Z 6 HOH B 44 68 68 HOH TIP . Z 6 HOH B 45 69 69 HOH TIP . Z 6 HOH B 46 70 70 HOH TIP . Z 6 HOH B 47 71 71 HOH TIP . Z 6 HOH B 48 72 72 HOH TIP . Z 6 HOH B 49 73 73 HOH TIP . Z 6 HOH B 50 74 74 HOH TIP . Z 6 HOH B 51 75 75 HOH TIP . Z 6 HOH B 52 76 76 HOH TIP . Z 6 HOH B 53 77 77 HOH TIP . Z 6 HOH B 54 78 78 HOH TIP . Z 6 HOH B 55 79 79 HOH TIP . Z 6 HOH B 56 81 81 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . M 2 60.903 18.886 40.927 1 51.37 ? N1 LDA 3840 B 1 HETATM 2 O O1 LDA . . . M 2 60.78 20.341 41.089 1 51.56 ? O1 LDA 3840 B 1 HETATM 3 C CM1 LDA . . . M 2 59.954 18.416 39.896 1 51.95 ? CM1 LDA 3840 B 1 HETATM 4 C CM2 LDA . . . M 2 62.261 18.543 40.482 1 50.84 ? CM2 LDA 3840 B 1 HETATM 5 C C1 LDA . . . M 2 60.632 18.218 42.234 1 50.22 ? C1 LDA 3840 B 1 HETATM 6 C C2 LDA . . . M 2 59.22 18.54 42.786 1 49.04 ? C2 LDA 3840 B 1 HETATM 7 C C3 LDA . . . M 2 59.035 17.807 44.116 1 49.39 ? C3 LDA 3840 B 1 HETATM 8 C C4 LDA . . . M 2 57.652 18.087 44.701 1 49.12 ? C4 LDA 3840 B 1 HETATM 9 C C5 LDA . . . M 2 57.504 17.325 46.026 1 49.45 ? C5 LDA 3840 B 1 HETATM 10 C C6 LDA . . . M 2 56.12 17.592 46.626 1 50.16 ? C6 LDA 3840 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #