data_2IRW
#
_model_server_result.job_id            FSwwDBJTVYbQXEpEtCToRg 
_model_server_result.datetime_utc      '2024-11-07 11:29:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2irw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":901}' 
#
_entry.id    2IRW 
#
_exptl.entry_id    2IRW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2IRW 
_cell.length_a            184.537 
_cell.length_b            184.537 
_cell.length_c            558.052 
_cell.Z_PDB               144 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2IRW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA,PQS dimeric 2 author_and_software_defined_assembly 1 
PISA,PQS dimeric 2 author_and_software_defined_assembly 2 
PISA,PQS dimeric 2 author_and_software_defined_assembly 3 
PISA,PQS dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,L 1 1 
C,D,M,N,O,P 2 1 
E,F,Q,R,S,T 3 1 
G,H,U,V,W,X 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 235 n n 
PA O2A NAP sing 236 n n 
PA O5B NAP sing 237 n n 
PA O3 NAP sing 238 n n 
O2A HOA2 NAP sing 239 n n 
O5B C5B NAP sing 240 n n 
C5B C4B NAP sing 241 n n 
C5B H51A NAP sing 242 n n 
C5B H52A NAP sing 243 n n 
C4B O4B NAP sing 244 n n 
C4B C3B NAP sing 245 n n 
C4B H4B NAP sing 246 n n 
O4B C1B NAP sing 247 n n 
C3B O3B NAP sing 248 n n 
C3B C2B NAP sing 249 n n 
C3B H3B NAP sing 250 n n 
O3B HO3A NAP sing 251 n n 
C2B O2B NAP sing 252 n n 
C2B C1B NAP sing 253 n n 
C2B H2B NAP sing 254 n n 
O2B P2B NAP sing 255 n n 
C1B N9A NAP sing 256 n n 
C1B H1B NAP sing 257 n n 
N9A C8A NAP sing 258 n y 
N9A C4A NAP sing 259 n y 
C8A N7A NAP doub 260 n y 
C8A H8A NAP sing 261 n n 
N7A C5A NAP sing 262 n y 
C5A C6A NAP sing 263 n y 
C5A C4A NAP doub 264 n y 
C6A N6A NAP sing 265 n n 
C6A N1A NAP doub 266 n y 
N6A H61A NAP sing 267 n n 
N6A H62A NAP sing 268 n n 
N1A C2A NAP sing 269 n y 
C2A N3A NAP doub 270 n y 
C2A H2A NAP sing 271 n n 
N3A C4A NAP sing 272 n y 
O3 PN NAP sing 273 n n 
PN O1N NAP doub 274 n n 
PN O2N NAP sing 275 n n 
PN O5D NAP sing 276 n n 
O5D C5D NAP sing 277 n n 
C5D C4D NAP sing 278 n n 
C5D H51N NAP sing 279 n n 
C5D H52N NAP sing 280 n n 
C4D O4D NAP sing 281 n n 
C4D C3D NAP sing 282 n n 
C4D H4D NAP sing 283 n n 
O4D C1D NAP sing 284 n n 
C3D O3D NAP sing 285 n n 
C3D C2D NAP sing 286 n n 
C3D H3D NAP sing 287 n n 
O3D HO3N NAP sing 288 n n 
C2D O2D NAP sing 289 n n 
C2D C1D NAP sing 290 n n 
C2D H2D NAP sing 291 n n 
O2D HO2N NAP sing 292 n n 
C1D N1N NAP sing 293 n n 
C1D H1D NAP sing 294 n n 
N1N C2N NAP sing 295 n y 
N1N C6N NAP doub 296 n y 
C2N C3N NAP doub 297 n y 
C2N H2N NAP sing 298 n n 
C3N C7N NAP sing 299 n n 
C3N C4N NAP sing 300 n y 
C7N O7N NAP doub 301 n n 
C7N N7N NAP sing 302 n n 
N7N H71N NAP sing 303 n n 
N7N H72N NAP sing 304 n n 
C4N C5N NAP doub 305 n y 
C4N H4N NAP sing 306 n n 
C5N C6N NAP sing 307 n y 
C5N H5N NAP sing 308 n n 
C6N H6N NAP sing 309 n n 
P2B O1X NAP doub 310 n n 
P2B O2X NAP sing 311 n n 
P2B O3X NAP sing 312 n n 
O2X HOP2 NAP sing 313 n n 
O3X HOP3 NAP sing 314 n n 
#
_atom_sites.entry_id                     2IRW 
_atom_sites.fract_transf_matrix[1][1]    0.005419 
_atom_sites.fract_transf_matrix[1][2]    0.003129 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006257 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001792 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 NAP A 1 901 901 NAP NAP . 
J 3 NN4 A 1 911 911 NN4 NN4 . 
K 2 NAP B 1 901 901 NAP NAP . 
L 3 NN4 B 1 911 911 NN4 NN4 . 
M 2 NAP C 1 901 901 NAP NAP . 
N 3 NN4 C 1 911 911 NN4 NN4 . 
O 2 NAP D 1 901 901 NAP NAP . 
P 3 NN4 D 1 911 911 NN4 NN4 . 
Q 2 NAP E 1 901 901 NAP NAP . 
R 3 NN4 E 1 911 911 NN4 NN4 . 
S 2 NAP F 1 901 901 NAP NAP . 
T 3 NN4 F 1 911 911 NN4 NN4 . 
U 2 NAP G 1 901 901 NAP NAP . 
V 3 NN4 G 1 911 911 NN4 NN4 . 
W 2 NAP H 1 901 901 NAP NAP . 
X 3 NN4 H 1 911 911 NN4 NN4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . W 2 41.452 66.676 412.885 1 44.59 ? PA NAP 901 H 1 
HETATM 2 O O1A NAP . . . W 2 42.497 65.676 413.215 1 44.95 ? O1A NAP 901 H 1 
HETATM 3 O O2A NAP . . . W 2 40.803 67.191 414.118 1 45.03 ? O2A NAP 901 H 1 
HETATM 4 O O5B NAP . . . W 2 40.382 66.013 411.886 1 43.17 ? O5B NAP 901 H 1 
HETATM 5 C C5B NAP . . . W 2 40.884 65.416 410.716 1 42.52 ? C5B NAP 901 H 1 
HETATM 6 C C4B NAP . . . W 2 39.794 64.685 409.949 1 42.01 ? C4B NAP 901 H 1 
HETATM 7 O O4B NAP . . . W 2 40.385 63.782 409.022 1 41.62 ? O4B NAP 901 H 1 
HETATM 8 C C3B NAP . . . W 2 38.905 63.866 410.867 1 41.77 ? C3B NAP 901 H 1 
HETATM 9 O O3B NAP . . . W 2 37.564 64.105 410.487 1 41.38 ? O3B NAP 901 H 1 
HETATM 10 C C2B NAP . . . W 2 39.336 62.43 410.612 1 41.17 ? C2B NAP 901 H 1 
HETATM 11 O O2B NAP . . . W 2 38.264 61.533 410.745 1 41.92 ? O2B NAP 901 H 1 
HETATM 12 C C1B NAP . . . W 2 39.843 62.487 409.178 1 40.15 ? C1B NAP 901 H 1 
HETATM 13 N N9A NAP . . . W 2 40.824 61.431 408.843 1 39.65 ? N9A NAP 901 H 1 
HETATM 14 C C8A NAP . . . W 2 41.914 61.031 409.567 1 39.42 ? C8A NAP 901 H 1 
HETATM 15 N N7A NAP . . . W 2 42.532 60.027 408.898 1 39.55 ? N7A NAP 901 H 1 
HETATM 16 C C5A NAP . . . W 2 41.856 59.778 407.758 1 39.13 ? C5A NAP 901 H 1 
HETATM 17 C C6A NAP . . . W 2 42.057 58.87 406.724 1 39.21 ? C6A NAP 901 H 1 
HETATM 18 N N6A NAP . . . W 2 43.082 58.019 406.736 1 39.01 ? N6A NAP 901 H 1 
HETATM 19 N N1A NAP . . . W 2 41.167 58.862 405.669 1 39.58 ? N1A NAP 901 H 1 
HETATM 20 C C2A NAP . . . W 2 40.093 59.741 405.633 1 39.66 ? C2A NAP 901 H 1 
HETATM 21 N N3A NAP . . . W 2 39.905 60.643 406.66 1 39.26 ? N3A NAP 901 H 1 
HETATM 22 C C4A NAP . . . W 2 40.776 60.657 407.708 1 39.32 ? C4A NAP 901 H 1 
HETATM 23 O O3 NAP . . . W 2 42.076 67.886 412.027 1 43.31 ? O3 NAP 901 H 1 
HETATM 24 P PN NAP . . . W 2 41.659 69.432 412.099 1 43.4 ? PN NAP 901 H 1 
HETATM 25 O O1N NAP . . . W 2 42.359 69.944 413.296 1 43.01 ? O1N NAP 901 H 1 
HETATM 26 O O2N NAP . . . W 2 40.176 69.52 411.932 1 42.71 ? O2N NAP 901 H 1 
HETATM 27 O O5D NAP . . . W 2 42.351 70.144 410.827 1 43.31 ? O5D NAP 901 H 1 
HETATM 28 C C5D NAP . . . W 2 41.719 70.222 409.559 1 42.09 ? C5D NAP 901 H 1 
HETATM 29 C C4D NAP . . . W 2 42.73 70.658 408.496 1 41.45 ? C4D NAP 901 H 1 
HETATM 30 O O4D NAP . . . W 2 43.287 71.911 408.85 1 40.68 ? O4D NAP 901 H 1 
HETATM 31 C C3D NAP . . . W 2 43.895 69.682 408.328 1 41.38 ? C3D NAP 901 H 1 
HETATM 32 O O3D NAP . . . W 2 44.094 69.382 406.963 1 40.81 ? O3D NAP 901 H 1 
HETATM 33 C C2D NAP . . . W 2 45.099 70.423 408.857 1 40.77 ? C2D NAP 901 H 1 
HETATM 34 O O2D NAP . . . W 2 46.233 70.108 408.089 1 40.94 ? O2D NAP 901 H 1 
HETATM 35 C C1D NAP . . . W 2 44.691 71.886 408.733 1 40.25 ? C1D NAP 901 H 1 
HETATM 36 N N1N NAP . . . W 2 45.271 72.697 409.81 1 40.15 ? N1N NAP 901 H 1 
HETATM 37 C C2N NAP . . . W 2 44.864 72.494 411.104 1 40.25 ? C2N NAP 901 H 1 
HETATM 38 C C3N NAP . . . W 2 45.416 73.259 412.131 1 39.61 ? C3N NAP 901 H 1 
HETATM 39 C C7N NAP . . . W 2 45 73.008 413.542 1 38.19 ? C7N NAP 901 H 1 
HETATM 40 O O7N NAP . . . W 2 45.595 73.767 414.559 1 38.11 ? O7N NAP 901 H 1 
HETATM 41 N N7N NAP . . . W 2 44.084 72.078 413.788 1 37.62 ? N7N NAP 901 H 1 
HETATM 42 C C4N NAP . . . W 2 46.38 74.229 411.835 1 39.94 ? C4N NAP 901 H 1 
HETATM 43 C C5N NAP . . . W 2 46.786 74.43 410.515 1 39.4 ? C5N NAP 901 H 1 
HETATM 44 C C6N NAP . . . W 2 46.216 73.65 409.509 1 39.91 ? C6N NAP 901 H 1 
HETATM 45 P P2B NAP . . . W 2 38.523 59.977 411.068 1 43.58 ? P2B NAP 901 H 1 
HETATM 46 O O1X NAP . . . W 2 39.719 59.836 411.989 1 42.64 ? O1X NAP 901 H 1 
HETATM 47 O O2X NAP . . . W 2 37.263 59.41 411.694 1 43.6 ? O2X NAP 901 H 1 
HETATM 48 O O3X NAP . . . W 2 38.822 59.223 409.791 1 43.32 ? O3X NAP 901 H 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           48 
#