data_2IS7 # _model_server_result.job_id EDNV1JNQrY4d476-iYRn4g _model_server_result.datetime_utc '2024-12-05 04:48:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2is7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":316}' # _entry.id 2IS7 # _exptl.entry_id 2IS7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IS7 _cell.length_a 49.99 _cell.length_b 67.146 _cell.length_c 92.114 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 255 n n PA O2A NAP sing 256 n n PA O5B NAP sing 257 n n PA O3 NAP sing 258 n n O2A HOA2 NAP sing 259 n n O5B C5B NAP sing 260 n n C5B C4B NAP sing 261 n n C5B H51A NAP sing 262 n n C5B H52A NAP sing 263 n n C4B O4B NAP sing 264 n n C4B C3B NAP sing 265 n n C4B H4B NAP sing 266 n n O4B C1B NAP sing 267 n n C3B O3B NAP sing 268 n n C3B C2B NAP sing 269 n n C3B H3B NAP sing 270 n n O3B HO3A NAP sing 271 n n C2B O2B NAP sing 272 n n C2B C1B NAP sing 273 n n C2B H2B NAP sing 274 n n O2B P2B NAP sing 275 n n C1B N9A NAP sing 276 n n C1B H1B NAP sing 277 n n N9A C8A NAP sing 278 n y N9A C4A NAP sing 279 n y C8A N7A NAP doub 280 n y C8A H8A NAP sing 281 n n N7A C5A NAP sing 282 n y C5A C6A NAP sing 283 n y C5A C4A NAP doub 284 n y C6A N6A NAP sing 285 n n C6A N1A NAP doub 286 n y N6A H61A NAP sing 287 n n N6A H62A NAP sing 288 n n N1A C2A NAP sing 289 n y C2A N3A NAP doub 290 n y C2A H2A NAP sing 291 n n N3A C4A NAP sing 292 n y O3 PN NAP sing 293 n n PN O1N NAP doub 294 n n PN O2N NAP sing 295 n n PN O5D NAP sing 296 n n O5D C5D NAP sing 297 n n C5D C4D NAP sing 298 n n C5D H51N NAP sing 299 n n C5D H52N NAP sing 300 n n C4D O4D NAP sing 301 n n C4D C3D NAP sing 302 n n C4D H4D NAP sing 303 n n O4D C1D NAP sing 304 n n C3D O3D NAP sing 305 n n C3D C2D NAP sing 306 n n C3D H3D NAP sing 307 n n O3D HO3N NAP sing 308 n n C2D O2D NAP sing 309 n n C2D C1D NAP sing 310 n n C2D H2D NAP sing 311 n n O2D HO2N NAP sing 312 n n C1D N1N NAP sing 313 n n C1D H1D NAP sing 314 n n N1N C2N NAP sing 315 n y N1N C6N NAP doub 316 n y C2N C3N NAP doub 317 n y C2N H2N NAP sing 318 n n C3N C7N NAP sing 319 n n C3N C4N NAP sing 320 n y C7N O7N NAP doub 321 n n C7N N7N NAP sing 322 n n N7N H71N NAP sing 323 n n N7N H72N NAP sing 324 n n C4N C5N NAP doub 325 n y C4N H4N NAP sing 326 n n C5N C6N NAP sing 327 n y C5N H5N NAP sing 328 n n C6N H6N NAP sing 329 n n P2B O1X NAP doub 330 n n P2B O2X NAP sing 331 n n P2B O3X NAP sing 332 n n O2X HOP2 NAP sing 333 n n O3X HOP3 NAP sing 334 n n # _atom_sites.entry_id 2IS7 _atom_sites.fract_transf_matrix[1][1] 0.020004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010856 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 316 316 NAP NAP . C 3 2CL A 1 317 317 2CL 2CL . D 4 HOH A 1 318 1 HOH HOH . D 4 HOH A 2 319 2 HOH HOH . D 4 HOH A 3 320 3 HOH HOH . D 4 HOH A 4 321 4 HOH HOH . D 4 HOH A 5 322 5 HOH HOH . D 4 HOH A 6 323 6 HOH HOH . D 4 HOH A 7 324 8 HOH HOH . D 4 HOH A 8 325 9 HOH HOH . D 4 HOH A 9 326 10 HOH HOH . D 4 HOH A 10 327 11 HOH HOH . D 4 HOH A 11 328 12 HOH HOH . D 4 HOH A 12 329 13 HOH HOH . D 4 HOH A 13 330 14 HOH HOH . D 4 HOH A 14 331 15 HOH HOH . D 4 HOH A 15 332 16 HOH HOH . D 4 HOH A 16 333 17 HOH HOH . D 4 HOH A 17 334 18 HOH HOH . D 4 HOH A 18 335 19 HOH HOH . D 4 HOH A 19 336 20 HOH HOH . D 4 HOH A 20 337 21 HOH HOH . D 4 HOH A 21 338 22 HOH HOH . D 4 HOH A 22 339 23 HOH HOH . D 4 HOH A 23 340 24 HOH HOH . D 4 HOH A 24 341 25 HOH HOH . D 4 HOH A 25 342 26 HOH HOH . D 4 HOH A 26 343 27 HOH HOH . D 4 HOH A 27 344 28 HOH HOH . D 4 HOH A 28 345 29 HOH HOH . D 4 HOH A 29 346 30 HOH HOH . D 4 HOH A 30 347 31 HOH HOH . D 4 HOH A 31 348 32 HOH HOH . D 4 HOH A 32 349 33 HOH HOH . D 4 HOH A 33 350 34 HOH HOH . D 4 HOH A 34 351 35 HOH HOH . D 4 HOH A 35 352 37 HOH HOH . D 4 HOH A 36 353 38 HOH HOH . D 4 HOH A 37 354 39 HOH HOH . D 4 HOH A 38 355 40 HOH HOH . D 4 HOH A 39 356 41 HOH HOH . D 4 HOH A 40 357 42 HOH HOH . D 4 HOH A 41 358 43 HOH HOH . D 4 HOH A 42 359 44 HOH HOH . D 4 HOH A 43 360 45 HOH HOH . D 4 HOH A 44 361 46 HOH HOH . D 4 HOH A 45 362 47 HOH HOH . D 4 HOH A 46 363 48 HOH HOH . D 4 HOH A 47 364 49 HOH HOH . D 4 HOH A 48 365 51 HOH HOH . D 4 HOH A 49 366 53 HOH HOH . D 4 HOH A 50 367 54 HOH HOH . D 4 HOH A 51 368 55 HOH HOH . D 4 HOH A 52 369 56 HOH HOH . D 4 HOH A 53 370 58 HOH HOH . D 4 HOH A 54 371 60 HOH HOH . D 4 HOH A 55 372 61 HOH HOH . D 4 HOH A 56 373 62 HOH HOH . D 4 HOH A 57 374 63 HOH HOH . D 4 HOH A 58 375 64 HOH HOH . D 4 HOH A 59 376 65 HOH HOH . D 4 HOH A 60 377 66 HOH HOH . D 4 HOH A 61 378 67 HOH HOH . D 4 HOH A 62 379 69 HOH HOH . D 4 HOH A 63 380 70 HOH HOH . D 4 HOH A 64 381 72 HOH HOH . D 4 HOH A 65 382 73 HOH HOH . D 4 HOH A 66 383 74 HOH HOH . D 4 HOH A 67 384 75 HOH HOH . D 4 HOH A 68 385 76 HOH HOH . D 4 HOH A 69 386 77 HOH HOH . D 4 HOH A 70 387 78 HOH HOH . D 4 HOH A 71 388 79 HOH HOH . D 4 HOH A 72 389 80 HOH HOH . D 4 HOH A 73 390 81 HOH HOH . D 4 HOH A 74 391 82 HOH HOH . D 4 HOH A 75 392 83 HOH HOH . D 4 HOH A 76 393 86 HOH HOH . D 4 HOH A 77 394 87 HOH HOH . D 4 HOH A 78 395 88 HOH HOH . D 4 HOH A 79 396 89 HOH HOH . D 4 HOH A 80 397 91 HOH HOH . D 4 HOH A 81 398 92 HOH HOH . D 4 HOH A 82 399 94 HOH HOH . D 4 HOH A 83 400 95 HOH HOH . D 4 HOH A 84 401 97 HOH HOH . D 4 HOH A 85 402 98 HOH HOH . D 4 HOH A 86 403 99 HOH HOH . D 4 HOH A 87 404 100 HOH HOH . D 4 HOH A 88 405 104 HOH HOH . D 4 HOH A 89 406 105 HOH HOH . D 4 HOH A 90 407 107 HOH HOH . D 4 HOH A 91 408 108 HOH HOH . D 4 HOH A 92 409 111 HOH HOH . D 4 HOH A 93 410 113 HOH HOH . D 4 HOH A 94 411 114 HOH HOH . D 4 HOH A 95 412 115 HOH HOH . D 4 HOH A 96 413 116 HOH HOH . D 4 HOH A 97 414 117 HOH HOH . D 4 HOH A 98 415 119 HOH HOH . D 4 HOH A 99 416 121 HOH HOH . D 4 HOH A 100 417 122 HOH HOH . D 4 HOH A 101 418 125 HOH HOH . D 4 HOH A 102 419 126 HOH HOH . D 4 HOH A 103 420 135 HOH HOH . D 4 HOH A 104 421 143 HOH HOH . D 4 HOH A 105 422 150 HOH HOH . D 4 HOH A 106 423 160 HOH HOH . D 4 HOH A 107 424 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 23.464 28.277 72.245 1 7.24 ? PA NAP 316 A 1 HETATM 2 O O1A NAP . . . B 2 24.374 29.345 71.758 1 9.16 ? O1A NAP 316 A 1 HETATM 3 O O2A NAP . . . B 2 22.459 28.719 73.2 1 9.9 ? O2A NAP 316 A 1 HETATM 4 O O5B NAP . . . B 2 24.393 27.085 72.819 1 6.74 ? O5B NAP 316 A 1 HETATM 5 C C5B NAP . . . B 2 23.832 25.885 73.31 1 6.33 ? C5B NAP 316 A 1 HETATM 6 C C4B NAP . . . B 2 24.977 24.976 73.757 1 8.07 ? C4B NAP 316 A 1 HETATM 7 O O4B NAP . . . B 2 25.714 25.621 74.793 1 9.26 ? O4B NAP 316 A 1 HETATM 8 C C3B NAP . . . B 2 24.489 23.639 74.29 1 8.97 ? C3B NAP 316 A 1 HETATM 9 O O3B NAP . . . B 2 25.382 22.619 73.86 1 10.26 ? O3B NAP 316 A 1 HETATM 10 C C2B NAP . . . B 2 24.577 23.8 75.789 1 8.72 ? C2B NAP 316 A 1 HETATM 11 O O2B NAP . . . B 2 24.91 22.582 76.439 1 10.33 ? O2B NAP 316 A 1 HETATM 12 C C1B NAP . . . B 2 25.732 24.776 75.941 1 10.05 ? C1B NAP 316 A 1 HETATM 13 N N9A NAP . . . B 2 25.646 25.588 77.164 1 10.06 ? N9A NAP 316 A 1 HETATM 14 C C8A NAP . . . B 2 24.548 26.261 77.649 1 11.09 ? C8A NAP 316 A 1 HETATM 15 N N7A NAP . . . B 2 24.919 26.91 78.78 1 11.22 ? N7A NAP 316 A 1 HETATM 16 C C5A NAP . . . B 2 26.239 26.665 79.006 1 10.29 ? C5A NAP 316 A 1 HETATM 17 C C6A NAP . . . B 2 27.123 27.069 80.009 1 11.77 ? C6A NAP 316 A 1 HETATM 18 N N6A NAP . . . B 2 26.692 27.857 81.005 1 10.62 ? N6A NAP 316 A 1 HETATM 19 N N1A NAP . . . B 2 28.44 26.645 79.975 1 11.2 ? N1A NAP 316 A 1 HETATM 20 C C2A NAP . . . B 2 28.889 25.815 78.945 1 11.62 ? C2A NAP 316 A 1 HETATM 21 N N3A NAP . . . B 2 28.005 25.423 77.955 1 10.7 ? N3A NAP 316 A 1 HETATM 22 C C4A NAP . . . B 2 26.703 25.837 77.992 1 11.12 ? C4A NAP 316 A 1 HETATM 23 O O3 NAP . . . B 2 22.81 27.469 70.996 1 10.78 ? O3 NAP 316 A 1 HETATM 24 P PN NAP . . . B 2 21.452 27.461 70.147 1 8.61 ? PN NAP 316 A 1 HETATM 25 O O1N NAP . . . B 2 20.601 26.351 70.612 1 9.53 ? O1N NAP 316 A 1 HETATM 26 O O2N NAP . . . B 2 21.891 27.44 68.721 1 9.22 ? O2N NAP 316 A 1 HETATM 27 O O5D NAP . . . B 2 20.752 28.903 70.312 1 6.56 ? O5D NAP 316 A 1 HETATM 28 C C5D NAP . . . B 2 19.918 29.161 71.435 1 6.33 ? C5D NAP 316 A 1 HETATM 29 C C4D NAP . . . B 2 18.443 29.064 71.048 1 5.52 ? C4D NAP 316 A 1 HETATM 30 O O4D NAP . . . B 2 18.132 30.043 70.066 1 6.88 ? O4D NAP 316 A 1 HETATM 31 C C3D NAP . . . B 2 17.962 27.765 70.399 1 6.54 ? C3D NAP 316 A 1 HETATM 32 O O3D NAP . . . B 2 17.838 26.667 71.273 1 5.37 ? O3D NAP 316 A 1 HETATM 33 C C2D NAP . . . B 2 16.642 28.214 69.806 1 6.61 ? C2D NAP 316 A 1 HETATM 34 O O2D NAP . . . B 2 15.698 28.278 70.846 1 5.8 ? O2D NAP 316 A 1 HETATM 35 C C1D NAP . . . B 2 17.02 29.608 69.291 1 6.32 ? C1D NAP 316 A 1 HETATM 36 N N1N NAP . . . B 2 17.414 29.526 67.847 1 5.29 ? N1N NAP 316 A 1 HETATM 37 C C2N NAP . . . B 2 16.619 30.105 66.916 1 5.19 ? C2N NAP 316 A 1 HETATM 38 C C3N NAP . . . B 2 16.967 30.039 65.564 1 5.82 ? C3N NAP 316 A 1 HETATM 39 C C7N NAP . . . B 2 16.068 30.668 64.547 1 5.86 ? C7N NAP 316 A 1 HETATM 40 O O7N NAP . . . B 2 16.268 30.304 63.233 1 9.2 ? O7N NAP 316 A 1 HETATM 41 N N7N NAP . . . B 2 15.139 31.546 64.913 1 6.91 ? N7N NAP 316 A 1 HETATM 42 C C4N NAP . . . B 2 18.125 29.395 65.156 1 5.95 ? C4N NAP 316 A 1 HETATM 43 C C5N NAP . . . B 2 18.958 28.818 66.121 1 6.65 ? C5N NAP 316 A 1 HETATM 44 C C6N NAP . . . B 2 18.578 28.911 67.466 1 7.76 ? C6N NAP 316 A 1 HETATM 45 P P2B NAP . . . B 2 23.81 21.703 77.211 1 11.48 ? P2B NAP 316 A 1 HETATM 46 O O1X NAP . . . B 2 22.442 21.871 76.627 1 11.56 ? O1X NAP 316 A 1 HETATM 47 O O2X NAP . . . B 2 24.366 20.298 77.073 1 13.53 ? O2X NAP 316 A 1 HETATM 48 O O3X NAP . . . B 2 23.803 22.084 78.681 1 12.53 ? O3X NAP 316 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #