data_2ISC
#
_model_server_result.job_id            Gc_rvgCsw9w4ZwrkJXAhPA 
_model_server_result.datetime_utc      '2024-10-19 17:40:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2isc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":402}' 
#
_entry.id    2ISC 
#
_exptl.entry_id    2ISC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              263.296 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3R,4R)-1-[(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)METHYL]-4-(HYDROXYMETHYL)PYRROLIDIN-3-OL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2ISC 
_cell.length_a            82.402 
_cell.length_b            113.821 
_cell.length_c            195.149 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ISC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
#
_chem_comp.formula           'C12 H17 N5 O2' 
_chem_comp.formula_weight    263.296 
_chem_comp.id                223 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3R,4R)-1-[(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)METHYL]-4-(HYDROXYMETHYL)PYRROLIDIN-3-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "4'-DEAZA-1'-AZA-2'-DEOXY-1'-(9-METHYLENE)-IMMUCILLIN-A" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C6 223 sing 1 n y 
N1 C2 223 doub 2 n y 
C2 N3 223 sing 3 n y 
C2 H2 223 sing 4 n n 
C4 C5 223 sing 5 n y 
C4 C9 223 sing 6 n y 
C4 N3 223 doub 7 n y 
C5 N7 223 sing 8 n y 
C5 C6 223 doub 9 n y 
C6 N6 223 sing 10 n n 
C8 N7 223 sing 11 n y 
C8 C9 223 doub 12 n y 
C8 H8 223 sing 13 n n 
N6 HN61 223 sing 14 n n 
N6 HN62 223 sing 15 n n 
C9 C10 223 sing 16 n n 
N7 HN7 223 sing 17 n n 
C10 N1' 223 sing 18 n n 
C10 H101 223 sing 19 n n 
C10 H102 223 sing 20 n n 
N1' C6' 223 sing 21 n n 
N1' C2' 223 sing 22 n n 
C6' C4' 223 sing 23 n n 
C6' "H6'1" 223 sing 24 n n 
C6' "H6'2" 223 sing 25 n n 
C4' C3' 223 sing 26 n n 
C4' C5' 223 sing 27 n n 
C4' H4' 223 sing 28 n n 
C5' O5' 223 sing 29 n n 
C5' "H5'1" 223 sing 30 n n 
C5' "H5'2" 223 sing 31 n n 
O5' HO5' 223 sing 32 n n 
C3' C2' 223 sing 33 n n 
C3' O3' 223 sing 34 n n 
C3' H3' 223 sing 35 n n 
O3' HO3' 223 sing 36 n n 
C2' "H2'1" 223 sing 37 n n 
C2' "H2'2" 223 sing 38 n n 
#
_atom_sites.entry_id                     2ISC 
_atom_sites.fract_transf_matrix[1][1]    0.012136 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008786 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005124 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 PO4 A 1 9005 9005 PO4 PO4 . 
H 2 PO4 A 1 9007 9007 PO4 PO4 . 
I 3 223 A 1 401 401 223 223 . 
J 2 PO4 B 1 9004 9004 PO4 PO4 . 
K 2 PO4 B 1 9009 9009 PO4 PO4 . 
L 3 223 B 1 402 402 223 223 . 
M 2 PO4 C 1 9006 9006 PO4 PO4 . 
N 3 223 C 1 405 405 223 223 . 
O 2 PO4 D 1 9001 9001 PO4 PO4 . 
P 3 223 D 1 403 403 223 223 . 
Q 2 PO4 E 1 9002 9002 PO4 PO4 . 
R 3 223 E 1 400 400 223 223 . 
S 2 PO4 F 1 9003 9003 PO4 PO4 . 
T 3 223 F 1 404 404 223 223 . 
U 4 HOH A 1 9008 2 HOH HOH . 
U 4 HOH A 2 9009 4 HOH HOH . 
U 4 HOH A 3 9010 5 HOH HOH . 
U 4 HOH A 4 9011 6 HOH HOH . 
U 4 HOH A 5 9012 7 HOH HOH . 
U 4 HOH A 6 9013 9 HOH HOH . 
U 4 HOH A 7 9014 10 HOH HOH . 
U 4 HOH A 8 9015 12 HOH HOH . 
U 4 HOH A 9 9016 17 HOH HOH . 
U 4 HOH A 10 9017 31 HOH HOH . 
U 4 HOH A 11 9018 66 HOH HOH . 
U 4 HOH A 12 9019 68 HOH HOH . 
U 4 HOH A 13 9020 71 HOH HOH . 
U 4 HOH A 14 9021 74 HOH HOH . 
U 4 HOH A 15 9022 81 HOH HOH . 
U 4 HOH A 16 9023 88 HOH HOH . 
U 4 HOH A 17 9024 150 HOH HOH . 
U 4 HOH A 18 9025 154 HOH HOH . 
U 4 HOH A 19 9026 157 HOH HOH . 
U 4 HOH A 20 9027 184 HOH HOH . 
U 4 HOH A 21 9028 191 HOH HOH . 
U 4 HOH A 22 9029 268 HOH HOH . 
U 4 HOH A 23 9030 324 HOH HOH . 
U 4 HOH A 24 9031 370 HOH HOH . 
U 4 HOH A 25 9032 468 HOH HOH . 
U 4 HOH A 26 9033 592 HOH HOH . 
U 4 HOH A 27 9034 854 HOH HOH . 
V 4 HOH B 1 9010 8 HOH HOH . 
V 4 HOH B 2 9011 15 HOH HOH . 
V 4 HOH B 3 9012 19 HOH HOH . 
V 4 HOH B 4 9013 20 HOH HOH . 
V 4 HOH B 5 9014 21 HOH HOH . 
V 4 HOH B 6 9015 22 HOH HOH . 
V 4 HOH B 7 9016 61 HOH HOH . 
V 4 HOH B 8 9017 69 HOH HOH . 
V 4 HOH B 9 9018 77 HOH HOH . 
V 4 HOH B 10 9019 78 HOH HOH . 
V 4 HOH B 11 9020 87 HOH HOH . 
V 4 HOH B 12 9021 97 HOH HOH . 
V 4 HOH B 13 9022 100 HOH HOH . 
V 4 HOH B 14 9023 112 HOH HOH . 
V 4 HOH B 15 9024 190 HOH HOH . 
V 4 HOH B 16 9025 197 HOH HOH . 
V 4 HOH B 17 9026 210 HOH HOH . 
V 4 HOH B 18 9027 236 HOH HOH . 
V 4 HOH B 19 9028 261 HOH HOH . 
V 4 HOH B 20 9029 297 HOH HOH . 
V 4 HOH B 21 9030 331 HOH HOH . 
V 4 HOH B 22 9031 379 HOH HOH . 
V 4 HOH B 23 9032 457 HOH HOH . 
V 4 HOH B 24 9033 498 HOH HOH . 
V 4 HOH B 25 9034 763 HOH HOH . 
V 4 HOH B 26 9035 841 HOH HOH . 
W 4 HOH C 1 9007 11 HOH HOH . 
W 4 HOH C 2 9008 23 HOH HOH . 
W 4 HOH C 3 9009 24 HOH HOH . 
W 4 HOH C 4 9010 28 HOH HOH . 
W 4 HOH C 5 9011 29 HOH HOH . 
W 4 HOH C 6 9012 30 HOH HOH . 
W 4 HOH C 7 9013 33 HOH HOH . 
W 4 HOH C 8 9014 34 HOH HOH . 
W 4 HOH C 9 9015 58 HOH HOH . 
W 4 HOH C 10 9016 67 HOH HOH . 
W 4 HOH C 11 9017 79 HOH HOH . 
W 4 HOH C 12 9018 83 HOH HOH . 
W 4 HOH C 13 9019 85 HOH HOH . 
W 4 HOH C 14 9020 86 HOH HOH . 
W 4 HOH C 15 9021 91 HOH HOH . 
W 4 HOH C 16 9022 96 HOH HOH . 
W 4 HOH C 17 9023 104 HOH HOH . 
W 4 HOH C 18 9024 122 HOH HOH . 
W 4 HOH C 19 9025 142 HOH HOH . 
W 4 HOH C 20 9026 195 HOH HOH . 
W 4 HOH C 21 9027 232 HOH HOH . 
W 4 HOH C 22 9028 238 HOH HOH . 
W 4 HOH C 23 9029 260 HOH HOH . 
W 4 HOH C 24 9030 373 HOH HOH . 
W 4 HOH C 25 9031 427 HOH HOH . 
W 4 HOH C 26 9032 583 HOH HOH . 
W 4 HOH C 27 9033 657 HOH HOH . 
W 4 HOH C 28 9034 845 HOH HOH . 
W 4 HOH C 29 9035 868 HOH HOH . 
W 4 HOH C 30 9036 999 HOH HOH . 
X 4 HOH D 1 9002 16 HOH HOH . 
X 4 HOH D 2 9003 35 HOH HOH . 
X 4 HOH D 3 9004 39 HOH HOH . 
X 4 HOH D 4 9005 40 HOH HOH . 
X 4 HOH D 5 9006 41 HOH HOH . 
X 4 HOH D 6 9007 42 HOH HOH . 
X 4 HOH D 7 9008 65 HOH HOH . 
X 4 HOH D 8 9009 70 HOH HOH . 
X 4 HOH D 9 9010 72 HOH HOH . 
X 4 HOH D 10 9011 75 HOH HOH . 
X 4 HOH D 11 9012 82 HOH HOH . 
X 4 HOH D 12 9013 89 HOH HOH . 
X 4 HOH D 13 9014 95 HOH HOH . 
X 4 HOH D 14 9015 99 HOH HOH . 
X 4 HOH D 15 9016 108 HOH HOH . 
X 4 HOH D 16 9017 116 HOH HOH . 
X 4 HOH D 17 9018 121 HOH HOH . 
X 4 HOH D 18 9019 125 HOH HOH . 
X 4 HOH D 19 9020 170 HOH HOH . 
X 4 HOH D 20 9021 183 HOH HOH . 
X 4 HOH D 21 9022 240 HOH HOH . 
X 4 HOH D 22 9023 249 HOH HOH . 
X 4 HOH D 23 9024 293 HOH HOH . 
X 4 HOH D 24 9025 308 HOH HOH . 
X 4 HOH D 25 9026 362 HOH HOH . 
X 4 HOH D 26 9027 369 HOH HOH . 
X 4 HOH D 27 9028 464 HOH HOH . 
X 4 HOH D 28 9029 545 HOH HOH . 
X 4 HOH D 29 9030 659 HOH HOH . 
X 4 HOH D 30 9031 715 HOH HOH . 
X 4 HOH D 31 9032 807 HOH HOH . 
Y 4 HOH E 1 9003 25 HOH HOH . 
Y 4 HOH E 2 9004 43 HOH HOH . 
Y 4 HOH E 3 9005 45 HOH HOH . 
Y 4 HOH E 4 9006 46 HOH HOH . 
Y 4 HOH E 5 9007 47 HOH HOH . 
Y 4 HOH E 6 9008 48 HOH HOH . 
Y 4 HOH E 7 9009 63 HOH HOH . 
Y 4 HOH E 8 9010 64 HOH HOH . 
Y 4 HOH E 9 9011 90 HOH HOH . 
Y 4 HOH E 10 9012 92 HOH HOH . 
Y 4 HOH E 11 9013 93 HOH HOH . 
Y 4 HOH E 12 9014 94 HOH HOH . 
Y 4 HOH E 13 9015 98 HOH HOH . 
Y 4 HOH E 14 9016 109 HOH HOH . 
Y 4 HOH E 15 9017 111 HOH HOH . 
Y 4 HOH E 16 9018 178 HOH HOH . 
Y 4 HOH E 17 9019 317 HOH HOH . 
Y 4 HOH E 18 9020 624 HOH HOH . 
Y 4 HOH E 19 9021 668 HOH HOH . 
Y 4 HOH E 20 9022 725 HOH HOH . 
Z 4 HOH F 1 9004 1 HOH HOH . 
Z 4 HOH F 2 9005 37 HOH HOH . 
Z 4 HOH F 3 9006 38 HOH HOH . 
Z 4 HOH F 4 9007 49 HOH HOH . 
Z 4 HOH F 5 9008 51 HOH HOH . 
Z 4 HOH F 6 9009 53 HOH HOH . 
Z 4 HOH F 7 9010 54 HOH HOH . 
Z 4 HOH F 8 9011 55 HOH HOH . 
Z 4 HOH F 9 9012 56 HOH HOH . 
Z 4 HOH F 10 9013 57 HOH HOH . 
Z 4 HOH F 11 9014 59 HOH HOH . 
Z 4 HOH F 12 9015 60 HOH HOH . 
Z 4 HOH F 13 9016 62 HOH HOH . 
Z 4 HOH F 14 9017 76 HOH HOH . 
Z 4 HOH F 15 9018 101 HOH HOH . 
Z 4 HOH F 16 9019 107 HOH HOH . 
Z 4 HOH F 17 9020 118 HOH HOH . 
Z 4 HOH F 18 9021 132 HOH HOH . 
Z 4 HOH F 19 9022 168 HOH HOH . 
Z 4 HOH F 20 9023 274 HOH HOH . 
Z 4 HOH F 21 9024 537 HOH HOH . 
Z 4 HOH F 22 9025 609 HOH HOH . 
Z 4 HOH F 23 9026 617 HOH HOH . 
Z 4 HOH F 24 9027 651 HOH HOH . 
Z 4 HOH F 25 9028 773 HOH HOH . 
Z 4 HOH F 26 9029 998 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 223 . . . L 3 -1.889 -5.993 -15.981 1 23.79 ? N1 223 402 B 1 
HETATM 2 C C2 223 . . . L 3 -2.644 -6.954 -16.786 1 24.57 ? C2 223 402 B 1 
HETATM 3 C C4 223 . . . L 3 -1.562 -8.699 -15.434 1 25.64 ? C4 223 402 B 1 
HETATM 4 C C5 223 . . . L 3 -0.848 -7.782 -14.684 1 25.69 ? C5 223 402 B 1 
HETATM 5 C C6 223 . . . L 3 -1.041 -6.341 -14.983 1 24.82 ? C6 223 402 B 1 
HETATM 6 C C8 223 . . . L 3 -0.329 -9.808 -13.951 1 24.86 ? C8 223 402 B 1 
HETATM 7 N N6 223 . . . L 3 -0.406 -5.48 -14.317 1 24.48 ? N6 223 402 B 1 
HETATM 8 N N3 223 . . . L 3 -2.417 -8.361 -16.429 1 25.64 ? N3 223 402 B 1 
HETATM 9 C C9 223 . . . L 3 -1.24 -9.97 -14.993 1 25.17 ? C9 223 402 B 1 
HETATM 10 N N7 223 . . . L 3 -0.095 -8.476 -13.786 1 25.51 ? N7 223 402 B 1 
HETATM 11 C C10 223 . . . L 3 -1.778 -11.276 -15.484 1 25.27 ? C10 223 402 B 1 
HETATM 12 N N1' 223 . . . L 3 -1.305 -11.778 -16.78 1 26.74 ? N1' 223 402 B 1 
HETATM 13 C C6' 223 . . . L 3 0.137 -11.641 -17.077 1 26.53 ? C6' 223 402 B 1 
HETATM 14 C C4' 223 . . . L 3 0.186 -11.492 -18.6 1 26.19 ? C4' 223 402 B 1 
HETATM 15 C C5' 223 . . . L 3 0.69 -10.115 -18.98 1 26.43 ? C5' 223 402 B 1 
HETATM 16 O O5' 223 . . . L 3 1.796 -9.83 -18.132 1 28.95 ? O5' 223 402 B 1 
HETATM 17 C C3' 223 . . . L 3 -1.231 -11.654 -19.096 1 24.97 ? C3' 223 402 B 1 
HETATM 18 O O3' 223 . . . L 3 -1.485 -13.035 -19.39 1 22.56 ? O3' 223 402 B 1 
HETATM 19 C C2' 223 . . . L 3 -2.064 -11.206 -17.904 1 25.81 ? C2' 223 402 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           19 
#