data_2ISF # _model_server_result.job_id dWDFJYx9dIwr5ExBGjryWQ _model_server_result.datetime_utc '2024-11-21 16:38:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2isf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":316}' # _entry.id 2ISF # _exptl.entry_id 2ISF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ISF _cell.length_a 50.07 _cell.length_b 66.842 _cell.length_c 92.118 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ISF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 2ISF _atom_sites.fract_transf_matrix[1][1] 0.019972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014961 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010856 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 316 316 NAP NAP . C 3 PAC A 1 317 317 PAC PAC . D 4 HOH A 1 401 401 HOH WAT . D 4 HOH A 2 402 402 HOH WAT . D 4 HOH A 3 405 405 HOH WAT . D 4 HOH A 4 406 406 HOH WAT . D 4 HOH A 5 407 407 HOH WAT . D 4 HOH A 6 409 409 HOH WAT . D 4 HOH A 7 411 411 HOH WAT . D 4 HOH A 8 412 412 HOH WAT . D 4 HOH A 9 413 413 HOH WAT . D 4 HOH A 10 414 414 HOH WAT . D 4 HOH A 11 415 415 HOH WAT . D 4 HOH A 12 416 416 HOH WAT . D 4 HOH A 13 417 417 HOH WAT . D 4 HOH A 14 418 418 HOH WAT . D 4 HOH A 15 420 420 HOH WAT . D 4 HOH A 16 421 421 HOH WAT . D 4 HOH A 17 422 422 HOH WAT . D 4 HOH A 18 424 424 HOH WAT . D 4 HOH A 19 425 425 HOH WAT . D 4 HOH A 20 427 427 HOH WAT . D 4 HOH A 21 428 428 HOH WAT . D 4 HOH A 22 429 429 HOH WAT . D 4 HOH A 23 430 430 HOH WAT . D 4 HOH A 24 433 433 HOH WAT . D 4 HOH A 25 434 434 HOH WAT . D 4 HOH A 26 436 436 HOH WAT . D 4 HOH A 27 437 437 HOH WAT . D 4 HOH A 28 438 438 HOH WAT . D 4 HOH A 29 439 439 HOH WAT . D 4 HOH A 30 440 440 HOH WAT . D 4 HOH A 31 445 445 HOH WAT . D 4 HOH A 32 446 446 HOH WAT . D 4 HOH A 33 447 447 HOH WAT . D 4 HOH A 34 450 450 HOH WAT . D 4 HOH A 35 451 451 HOH WAT . D 4 HOH A 36 453 453 HOH WAT . D 4 HOH A 37 454 454 HOH WAT . D 4 HOH A 38 455 455 HOH WAT . D 4 HOH A 39 456 456 HOH WAT . D 4 HOH A 40 457 457 HOH WAT . D 4 HOH A 41 458 458 HOH WAT . D 4 HOH A 42 460 460 HOH WAT . D 4 HOH A 43 461 461 HOH WAT . D 4 HOH A 44 462 462 HOH WAT . D 4 HOH A 45 466 466 HOH WAT . D 4 HOH A 46 468 468 HOH WAT . D 4 HOH A 47 469 469 HOH WAT . D 4 HOH A 48 470 470 HOH WAT . D 4 HOH A 49 471 471 HOH WAT . D 4 HOH A 50 473 473 HOH WAT . D 4 HOH A 51 475 475 HOH WAT . D 4 HOH A 52 477 477 HOH WAT . D 4 HOH A 53 480 480 HOH WAT . D 4 HOH A 54 484 484 HOH WAT . D 4 HOH A 55 485 485 HOH WAT . D 4 HOH A 56 486 486 HOH WAT . D 4 HOH A 57 487 487 HOH WAT . D 4 HOH A 58 489 489 HOH WAT . D 4 HOH A 59 491 491 HOH WAT . D 4 HOH A 60 493 493 HOH WAT . D 4 HOH A 61 496 496 HOH WAT . D 4 HOH A 62 497 497 HOH WAT . D 4 HOH A 63 498 498 HOH WAT . D 4 HOH A 64 499 499 HOH WAT . D 4 HOH A 65 500 500 HOH WAT . D 4 HOH A 66 501 501 HOH WAT . D 4 HOH A 67 502 502 HOH WAT . D 4 HOH A 68 503 503 HOH WAT . D 4 HOH A 69 506 506 HOH WAT . D 4 HOH A 70 507 507 HOH WAT . D 4 HOH A 71 508 508 HOH WAT . D 4 HOH A 72 509 509 HOH WAT . D 4 HOH A 73 516 516 HOH WAT . D 4 HOH A 74 517 517 HOH WAT . D 4 HOH A 75 520 520 HOH WAT . D 4 HOH A 76 522 522 HOH WAT . D 4 HOH A 77 526 526 HOH WAT . D 4 HOH A 78 527 527 HOH WAT . D 4 HOH A 79 532 532 HOH WAT . D 4 HOH A 80 533 533 HOH WAT . D 4 HOH A 81 534 534 HOH WAT . D 4 HOH A 82 535 535 HOH WAT . D 4 HOH A 83 537 537 HOH WAT . D 4 HOH A 84 543 543 HOH WAT . D 4 HOH A 85 544 544 HOH WAT . D 4 HOH A 86 546 546 HOH WAT . D 4 HOH A 87 548 548 HOH WAT . D 4 HOH A 88 550 550 HOH WAT . D 4 HOH A 89 551 551 HOH WAT . D 4 HOH A 90 552 552 HOH WAT . D 4 HOH A 91 555 555 HOH WAT . D 4 HOH A 92 559 559 HOH WAT . D 4 HOH A 93 560 560 HOH WAT . D 4 HOH A 94 563 563 HOH WAT . D 4 HOH A 95 568 568 HOH WAT . D 4 HOH A 96 573 573 HOH WAT . D 4 HOH A 97 577 577 HOH WAT . D 4 HOH A 98 578 578 HOH WAT . D 4 HOH A 99 582 582 HOH WAT . D 4 HOH A 100 584 584 HOH WAT . D 4 HOH A 101 596 596 HOH WAT . D 4 HOH A 102 599 599 HOH WAT . D 4 HOH A 103 601 601 HOH WAT . D 4 HOH A 104 608 608 HOH WAT . D 4 HOH A 105 613 613 HOH WAT . D 4 HOH A 106 618 618 HOH WAT . D 4 HOH A 107 622 622 HOH WAT . D 4 HOH A 108 623 623 HOH WAT . D 4 HOH A 109 625 625 HOH WAT . D 4 HOH A 110 627 627 HOH WAT . D 4 HOH A 111 629 629 HOH WAT . D 4 HOH A 112 633 633 HOH WAT . D 4 HOH A 113 635 635 HOH WAT . D 4 HOH A 114 645 645 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 23.573 27.98 72.54 1 2 ? PA NAP 316 A 1 HETATM 2 O O1A NAP . . . B 2 24.423 29.037 72.01 1 5.2 ? O1A NAP 316 A 1 HETATM 3 O O2A NAP . . . B 2 22.583 28.312 73.555 1 5.1 ? O2A NAP 316 A 1 HETATM 4 O O5B NAP . . . B 2 24.465 26.816 73.109 1 3.44 ? O5B NAP 316 A 1 HETATM 5 C C5B NAP . . . B 2 23.86 25.614 73.592 1 2 ? C5B NAP 316 A 1 HETATM 6 C C4B NAP . . . B 2 25.02 24.722 73.967 1 3 ? C4B NAP 316 A 1 HETATM 7 O O4B NAP . . . B 2 25.871 25.324 74.95 1 2.96 ? O4B NAP 316 A 1 HETATM 8 C C3B NAP . . . B 2 24.603 23.395 74.547 1 2.06 ? C3B NAP 316 A 1 HETATM 9 O O3B NAP . . . B 2 25.517 22.424 74.091 1 4.57 ? O3B NAP 316 A 1 HETATM 10 C C2B NAP . . . B 2 24.712 23.563 76.04 1 4.79 ? C2B NAP 316 A 1 HETATM 11 O O2B NAP . . . B 2 24.992 22.297 76.629 1 6.19 ? O2B NAP 316 A 1 HETATM 12 C C1B NAP . . . B 2 25.905 24.483 76.113 1 5.16 ? C1B NAP 316 A 1 HETATM 13 N N9A NAP . . . B 2 25.877 25.303 77.359 1 3.3 ? N9A NAP 316 A 1 HETATM 14 C C8A NAP . . . B 2 24.828 25.967 77.889 1 5.16 ? C8A NAP 316 A 1 HETATM 15 N N7A NAP . . . B 2 25.197 26.611 79.005 1 5.75 ? N7A NAP 316 A 1 HETATM 16 C C5A NAP . . . B 2 26.491 26.317 79.138 1 7.09 ? C5A NAP 316 A 1 HETATM 17 C C6A NAP . . . B 2 27.318 26.72 80.185 1 7.61 ? C6A NAP 316 A 1 HETATM 18 N N6A NAP . . . B 2 26.89 27.489 81.184 1 5.65 ? N6A NAP 316 A 1 HETATM 19 N N1A NAP . . . B 2 28.587 26.271 80.145 1 8.7 ? N1A NAP 316 A 1 HETATM 20 C C2A NAP . . . B 2 29.023 25.502 79.151 1 6.81 ? C2A NAP 316 A 1 HETATM 21 N N3A NAP . . . B 2 28.228 25.133 78.148 1 4.42 ? N3A NAP 316 A 1 HETATM 22 C C4A NAP . . . B 2 26.943 25.51 78.124 1 4.12 ? C4A NAP 316 A 1 HETATM 23 O O3 NAP . . . B 2 22.908 27.257 71.284 1 5.27 ? O3 NAP 316 A 1 HETATM 24 P PN NAP . . . B 2 21.554 27.171 70.423 1 2.31 ? PN NAP 316 A 1 HETATM 25 O O1N NAP . . . B 2 20.749 26.064 70.973 1 6.3 ? O1N NAP 316 A 1 HETATM 26 O O2N NAP . . . B 2 21.941 27.103 69.003 1 2.93 ? O2N NAP 316 A 1 HETATM 27 O O5D NAP . . . B 2 20.855 28.603 70.632 1 6.34 ? O5D NAP 316 A 1 HETATM 28 C C5D NAP . . . B 2 19.921 28.862 71.699 1 6.81 ? C5D NAP 316 A 1 HETATM 29 C C4D NAP . . . B 2 18.474 28.803 71.239 1 7.87 ? C4D NAP 316 A 1 HETATM 30 O O4D NAP . . . B 2 18.277 29.763 70.203 1 2 ? O4D NAP 316 A 1 HETATM 31 C C3D NAP . . . B 2 18.033 27.487 70.603 1 6.63 ? C3D NAP 316 A 1 HETATM 32 O O3D NAP . . . B 2 17.855 26.348 71.455 1 4.26 ? O3D NAP 316 A 1 HETATM 33 C C2D NAP . . . B 2 16.756 27.958 69.964 1 6.65 ? C2D NAP 316 A 1 HETATM 34 O O2D NAP . . . B 2 15.682 27.98 70.894 1 2 ? O2D NAP 316 A 1 HETATM 35 C C1D NAP . . . B 2 17.136 29.349 69.464 1 4.35 ? C1D NAP 316 A 1 HETATM 36 N N1N NAP . . . B 2 17.507 29.321 68.034 1 3.23 ? N1N NAP 316 A 1 HETATM 37 C C2N NAP . . . B 2 16.652 29.865 67.067 1 2.33 ? C2N NAP 316 A 1 HETATM 38 C C3N NAP . . . B 2 16.982 29.779 65.714 1 2.86 ? C3N NAP 316 A 1 HETATM 39 C C7N NAP . . . B 2 16.129 30.464 64.639 1 3.32 ? C7N NAP 316 A 1 HETATM 40 O O7N NAP . . . B 2 16.376 30.303 63.441 1 4.79 ? O7N NAP 316 A 1 HETATM 41 N N7N NAP . . . B 2 15.16 31.248 65.081 1 3.79 ? N7N NAP 316 A 1 HETATM 42 C C4N NAP . . . B 2 18.175 29.153 65.351 1 3.49 ? C4N NAP 316 A 1 HETATM 43 C C5N NAP . . . B 2 19.048 28.62 66.303 1 3.39 ? C5N NAP 316 A 1 HETATM 44 C C6N NAP . . . B 2 18.703 28.705 67.645 1 3.99 ? C6N NAP 316 A 1 HETATM 45 P P2B NAP . . . B 2 23.981 21.475 77.555 1 8.1 ? P2B NAP 316 A 1 HETATM 46 O O1X NAP . . . B 2 22.653 21.612 76.945 1 2 ? O1X NAP 316 A 1 HETATM 47 O O2X NAP . . . B 2 24.581 20.141 77.441 1 9.88 ? O2X NAP 316 A 1 HETATM 48 O O3X NAP . . . B 2 24.175 22.063 78.886 1 3.95 ? O3X NAP 316 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #