data_2ISQ # _model_server_result.job_id IYq-gZ3IBgFGhu32u96QTg _model_server_result.datetime_utc '2024-11-02 01:30:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2isq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 2ISQ # _exptl.entry_id 2ISQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ISQ _cell.length_a 104.86 _cell.length_b 104.86 _cell.length_c 99.315 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ISQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_664 -y+1,-x+1,-z-1/2 0 -1 0 -1 0 0 0 0 -1 104.86 104.86 -49.6575 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 44 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 46 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 400 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.236 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 2ISQ _atom_sites.fract_transf_matrix[1][1] 0.009537 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009537 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 500 500 SO4 SO4 . D 4 PLP A 1 400 400 PLP PLP . E 5 HOH A 1 501 1 HOH WAT . E 5 HOH A 2 502 2 HOH WAT . E 5 HOH A 3 503 3 HOH WAT . E 5 HOH A 4 504 4 HOH WAT . E 5 HOH A 5 505 5 HOH WAT . E 5 HOH A 6 506 7 HOH WAT . E 5 HOH A 7 507 8 HOH WAT . E 5 HOH A 8 508 9 HOH WAT . E 5 HOH A 9 509 10 HOH WAT . E 5 HOH A 10 510 11 HOH WAT . E 5 HOH A 11 511 12 HOH WAT . E 5 HOH A 12 512 13 HOH WAT . E 5 HOH A 13 513 14 HOH WAT . E 5 HOH A 14 514 15 HOH WAT . E 5 HOH A 15 515 16 HOH WAT . E 5 HOH A 16 516 17 HOH WAT . E 5 HOH A 17 517 18 HOH WAT . E 5 HOH A 18 518 19 HOH WAT . E 5 HOH A 19 519 20 HOH WAT . E 5 HOH A 20 520 21 HOH WAT . E 5 HOH A 21 521 23 HOH WAT . E 5 HOH A 22 522 24 HOH WAT . E 5 HOH A 23 523 25 HOH WAT . E 5 HOH A 24 524 26 HOH WAT . E 5 HOH A 25 525 27 HOH WAT . E 5 HOH A 26 526 28 HOH WAT . E 5 HOH A 27 527 29 HOH WAT . E 5 HOH A 28 528 30 HOH WAT . E 5 HOH A 29 529 31 HOH WAT . E 5 HOH A 30 530 32 HOH WAT . E 5 HOH A 31 531 33 HOH WAT . E 5 HOH A 32 532 34 HOH WAT . E 5 HOH A 33 533 36 HOH WAT . E 5 HOH A 34 534 37 HOH WAT . E 5 HOH A 35 535 38 HOH WAT . E 5 HOH A 36 536 39 HOH WAT . E 5 HOH A 37 537 40 HOH WAT . E 5 HOH A 38 538 41 HOH WAT . E 5 HOH A 39 539 42 HOH WAT . E 5 HOH A 40 540 43 HOH WAT . E 5 HOH A 41 541 44 HOH WAT . E 5 HOH A 42 542 45 HOH WAT . E 5 HOH A 43 543 46 HOH WAT . E 5 HOH A 44 544 47 HOH WAT . E 5 HOH A 45 545 48 HOH WAT . E 5 HOH A 46 546 49 HOH WAT . E 5 HOH A 47 547 50 HOH WAT . E 5 HOH A 48 548 51 HOH WAT . E 5 HOH A 49 549 52 HOH WAT . E 5 HOH A 50 550 53 HOH WAT . E 5 HOH A 51 551 54 HOH WAT . E 5 HOH A 52 552 55 HOH WAT . E 5 HOH A 53 553 56 HOH WAT . E 5 HOH A 54 554 57 HOH WAT . E 5 HOH A 55 555 58 HOH WAT . E 5 HOH A 56 556 59 HOH WAT . E 5 HOH A 57 557 60 HOH WAT . E 5 HOH A 58 558 62 HOH WAT . E 5 HOH A 59 559 63 HOH WAT . E 5 HOH A 60 560 64 HOH WAT . E 5 HOH A 61 561 65 HOH WAT . E 5 HOH A 62 562 66 HOH WAT . E 5 HOH A 63 563 67 HOH WAT . E 5 HOH A 64 564 68 HOH WAT . E 5 HOH A 65 565 69 HOH WAT . E 5 HOH A 66 566 70 HOH WAT . E 5 HOH A 67 567 71 HOH WAT . E 5 HOH A 68 568 72 HOH WAT . E 5 HOH A 69 569 73 HOH WAT . E 5 HOH A 70 570 74 HOH WAT . E 5 HOH A 71 571 75 HOH WAT . E 5 HOH A 72 572 76 HOH WAT . E 5 HOH A 73 573 78 HOH WAT . E 5 HOH A 74 574 79 HOH WAT . E 5 HOH A 75 575 80 HOH WAT . E 5 HOH A 76 576 81 HOH WAT . E 5 HOH A 77 577 82 HOH WAT . E 5 HOH A 78 578 83 HOH WAT . E 5 HOH A 79 579 84 HOH WAT . E 5 HOH A 80 580 85 HOH WAT . E 5 HOH A 81 581 86 HOH WAT . E 5 HOH A 82 582 87 HOH WAT . E 5 HOH A 83 583 88 HOH WAT . E 5 HOH A 84 584 89 HOH WAT . E 5 HOH A 85 585 90 HOH WAT . E 5 HOH A 86 586 91 HOH WAT . E 5 HOH A 87 587 92 HOH WAT . E 5 HOH A 88 588 93 HOH WAT . E 5 HOH A 89 589 94 HOH WAT . E 5 HOH A 90 590 95 HOH WAT . E 5 HOH A 91 591 96 HOH WAT . E 5 HOH A 92 592 98 HOH WAT . E 5 HOH A 93 593 99 HOH WAT . E 5 HOH A 94 594 100 HOH WAT . E 5 HOH A 95 595 101 HOH WAT . E 5 HOH A 96 596 102 HOH WAT . E 5 HOH A 97 597 103 HOH WAT . E 5 HOH A 98 598 104 HOH WAT . E 5 HOH A 99 599 105 HOH WAT . E 5 HOH A 100 600 106 HOH WAT . E 5 HOH A 101 601 108 HOH WAT . E 5 HOH A 102 602 109 HOH WAT . E 5 HOH A 103 603 110 HOH WAT . E 5 HOH A 104 604 111 HOH WAT . E 5 HOH A 105 605 112 HOH WAT . F 5 HOH B 1 6 6 HOH WAT . F 5 HOH B 2 22 22 HOH WAT . F 5 HOH B 3 35 35 HOH WAT . F 5 HOH B 4 61 61 HOH WAT . F 5 HOH B 5 77 77 HOH WAT . F 5 HOH B 6 97 97 HOH WAT . F 5 HOH B 7 107 107 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . D 4 79.845 44.304 -19.654 1 18.77 ? N1 PLP 400 A 1 HETATM 2 C C2 PLP . . . D 4 78.721 43.803 -19.008 1 14.97 ? C2 PLP 400 A 1 HETATM 3 C C2A PLP . . . D 4 77.445 43.748 -19.846 1 17.57 ? C2A PLP 400 A 1 HETATM 4 C C3 PLP . . . D 4 78.849 43.402 -17.684 1 14.33 ? C3 PLP 400 A 1 HETATM 5 O O3 PLP . . . D 4 77.714 42.919 -17.093 1 8.49 ? O3 PLP 400 A 1 HETATM 6 C C4 PLP . . . D 4 80.052 43.481 -16.977 1 17.05 ? C4 PLP 400 A 1 HETATM 7 C C4A PLP . . . D 4 80.139 43.031 -15.511 1 5.63 ? C4A PLP 400 A 1 HETATM 8 C C5 PLP . . . D 4 81.217 43.992 -17.639 1 18.81 ? C5 PLP 400 A 1 HETATM 9 C C6 PLP . . . D 4 81.045 44.384 -18.964 1 18.24 ? C6 PLP 400 A 1 HETATM 10 C C5A PLP . . . D 4 82.618 44.157 -17.048 1 18.93 ? C5A PLP 400 A 1 HETATM 11 O O4P PLP . . . D 4 83.198 43.057 -16.36 1 14.44 ? O4P PLP 400 A 1 HETATM 12 P P PLP . . . D 4 83.938 43.247 -14.998 1 14.94 ? P PLP 400 A 1 HETATM 13 O O1P PLP . . . D 4 84.38 41.864 -14.667 1 5.69 ? O1P PLP 400 A 1 HETATM 14 O O2P PLP . . . D 4 82.926 43.751 -14.039 1 4.69 ? O2P PLP 400 A 1 HETATM 15 O O3P PLP . . . D 4 85.061 44.162 -15.166 1 3.93 ? O3P PLP 400 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #