data_2ISS
#
_model_server_result.job_id            nSZZqMnaSYokF8i_VIiRnA 
_model_server_result.datetime_utc      '2024-11-22 16:25:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2iss 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":294}' 
#
_entry.id    2ISS 
#
_exptl.entry_id    2ISS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              230.11 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RIBULOSE-5-PHOSPHATE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2ISS 
_cell.length_a            92.529 
_cell.length_b            204.098 
_cell.length_c            221.336 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ISS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    24-meric 
_pdbx_struct_assembly.oligomeric_count      24 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 92.529 0 0 
3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 92.529 0 221.336 
4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 221.336 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 I N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 102 A LYS 82 1_555 G C3 5RP . A 5RP 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 B NZ LYS 102 B LYS 82 1_555 I C3 5RP . B 5RP 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 C NZ LYS 102 C LYS 82 1_555 K C3 5RP . C 5RP 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C5 H11 O8 P' 
_chem_comp.formula_weight    230.11 
_chem_comp.id                5RP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RIBULOSE-5-PHOSPHATE 
_chem_comp.type              saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 5RP sing 1 n n 
C2 O1 5RP sing 2 n n 
C2 H21 5RP sing 3 n n 
C2 H22 5RP sing 4 n n 
C3 C5 5RP sing 5 n n 
C3 O4 5RP doub 6 n n 
C5 O13 5RP sing 7 n n 
C5 C6 5RP sing 8 n n 
C5 H5 5RP sing 9 n n 
O13 H13 5RP sing 10 n n 
C6 O14 5RP sing 11 n n 
C6 C7 5RP sing 12 n n 
C6 H6 5RP sing 13 n n 
O14 H14 5RP sing 14 n n 
C7 O8 5RP sing 15 n n 
C7 H71 5RP sing 16 n n 
C7 H72 5RP sing 17 n n 
O8 P9 5RP sing 18 n n 
P9 O12 5RP doub 19 n n 
P9 O11 5RP sing 20 n n 
P9 O10 5RP sing 21 n n 
O11 H11 5RP sing 22 n n 
O10 H10 5RP sing 23 n n 
O1 HO1 5RP sing 24 n n 
#
_atom_sites.entry_id                     2ISS 
_atom_sites.fract_transf_matrix[1][1]    0.010807 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0049 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004518 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 5RP A 1 294 282 5RP 5RP . 
H 4 PO4 A 1 300 300 PO4 PO4 . 
I 3 5RP B 1 294 282 5RP 5RP . 
J 4 PO4 B 1 301 301 PO4 PO4 . 
K 3 5RP C 1 294 282 5RP 5RP . 
L 4 PO4 C 1 302 302 PO4 PO4 . 
M 5 HOH A 1 351 351 HOH HOH . 
M 5 HOH A 2 353 353 HOH HOH . 
M 5 HOH A 3 354 354 HOH HOH . 
M 5 HOH A 4 359 359 HOH HOH . 
M 5 HOH A 5 364 364 HOH HOH . 
M 5 HOH A 6 366 366 HOH HOH . 
M 5 HOH A 7 380 380 HOH HOH . 
M 5 HOH A 8 386 386 HOH HOH . 
N 5 HOH B 1 352 352 HOH HOH . 
N 5 HOH B 2 361 361 HOH HOH . 
N 5 HOH B 3 368 368 HOH HOH . 
N 5 HOH B 4 369 369 HOH HOH . 
N 5 HOH B 5 371 371 HOH HOH . 
N 5 HOH B 6 374 374 HOH HOH . 
N 5 HOH B 7 375 375 HOH HOH . 
N 5 HOH B 8 376 376 HOH HOH . 
N 5 HOH B 9 377 377 HOH HOH . 
N 5 HOH B 10 378 378 HOH HOH . 
N 5 HOH B 11 379 379 HOH HOH . 
N 5 HOH B 12 381 381 HOH HOH . 
N 5 HOH B 13 385 385 HOH HOH . 
N 5 HOH B 14 387 387 HOH HOH . 
O 5 HOH C 1 350 350 HOH HOH . 
O 5 HOH C 2 355 355 HOH HOH . 
O 5 HOH C 3 357 357 HOH HOH . 
O 5 HOH C 4 360 360 HOH HOH . 
O 5 HOH C 5 365 365 HOH HOH . 
O 5 HOH C 6 370 370 HOH HOH . 
O 5 HOH C 7 372 372 HOH HOH . 
O 5 HOH C 8 382 382 HOH HOH . 
O 5 HOH C 9 383 383 HOH HOH . 
P 5 HOH D 1 356 356 HOH HOH . 
P 5 HOH D 2 363 363 HOH HOH . 
P 5 HOH D 3 384 384 HOH HOH . 
Q 5 HOH E 1 358 358 HOH HOH . 
Q 5 HOH E 2 362 362 HOH HOH . 
Q 5 HOH E 3 367 367 HOH HOH . 
R 5 HOH F 1 373 373 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 5RP . . . K 3 71.863 32.084 123.656 1 69.38 ? C2 5RP 294 C 1 
HETATM 2 C C3 5RP . . . K 3 73.387 31.954 123.709 1 70.69 ? C3 5RP 294 C 1 
HETATM 3 C C5 5RP . . . K 3 74.231 32.343 122.493 1 73.37 ? C5 5RP 294 C 1 
HETATM 4 O O13 5RP . . . K 3 74.303 33.769 122.399 1 75.5 ? O13 5RP 294 C 1 
HETATM 5 C C6 5RP . . . K 3 73.592 31.78 121.219 1 73.82 ? C6 5RP 294 C 1 
HETATM 6 O O14 5RP . . . K 3 73.201 30.422 121.441 1 76.52 ? O14 5RP 294 C 1 
HETATM 7 C C7 5RP . . . K 3 74.57 31.847 120.042 1 72.1 ? C7 5RP 294 C 1 
HETATM 8 O O8 5RP . . . K 3 74.031 31.201 118.884 1 69.16 ? O8 5RP 294 C 1 
HETATM 9 P P9 5RP . . . K 3 74.996 30.828 117.648 1 66.09 ? P9 5RP 294 C 1 
HETATM 10 O O12 5RP . . . K 3 75.338 32.221 116.918 1 67.06 ? O12 5RP 294 C 1 
HETATM 11 O O11 5RP . . . K 3 76.206 30.087 118.066 1 66.85 ? O11 5RP 294 C 1 
HETATM 12 O O10 5RP . . . K 3 74.086 29.998 116.612 1 66.92 ? O10 5RP 294 C 1 
HETATM 13 O O1 5RP . . . K 3 71.453 33.423 123.948 1 68.72 ? O1 5RP 294 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           13 
#