data_2IT6 # _model_server_result.job_id pDFhEHubSTM1_Vng9a8t1A _model_server_result.datetime_utc '2024-10-19 15:37:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2it6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":405}' # _entry.id 2IT6 # _exptl.entry_id 2IT6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IT6 _cell.length_a 55.64 _cell.length_b 55.64 _cell.length_c 53.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IT6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 MAN _pdbx_entity_branch_link.comp_id_2 MAN _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B MAN 1 B 1 MAN C 3 MAN 2 n B MAN 2 B 2 MAN C 2 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 253 1_555 A SG CYS 135 A CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 7 A CYS 256 1_555 A SG CYS 18 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 35 A CYS 284 1_555 A SG CYS 128 A CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 107 A CYS 356 1_555 A SG CYS 120 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B O2 MAN . B MAN 1 1_555 B C1 MAN . B MAN 2 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.403 ? metalc ? metalc1 A OD1 ASP 71 A ASP 320 1_555 C CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc2 A OD2 ASP 71 A ASP 320 1_555 C CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc3 A OE2 GLU 75 A GLU 324 1_555 C CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc4 A OE1 GLU 75 A GLU 324 1_555 C CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc5 A OE1 GLU 75 A GLU 324 1_555 E CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc6 A OE1 GLU 98 A GLU 347 1_555 D CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc7 A OD1 ASN 100 A ASN 349 1_555 D CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc8 A OD1 ASN 101 A ASN 350 1_555 C CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc9 A OE2 GLU 104 A GLU 353 1_555 E CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc10 A O GLU 105 A GLU 354 1_555 C CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc11 A OE1 GLU 105 A GLU 354 1_555 D CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc12 A OD1 ASP 106 A ASP 355 1_555 C CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc13 A OD1 ASP 106 A ASP 355 1_555 E CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc14 A OD2 ASP 106 A ASP 355 1_555 E CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc15 A OD1 ASN 116 A ASN 365 1_555 D CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc16 A OD1 ASP 117 A ASP 366 1_555 D CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc17 A O ASP 117 A ASP 366 1_555 D CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc18 C CA CA . A CA 405 1_555 F O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc19 D CA CA . A CA 406 1_555 B O3 MAN . B MAN 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.348 ? metalc ? metalc20 D CA CA . A CA 406 1_555 B O4 MAN . B MAN 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.482 ? metalc ? metalc21 D CA CA . A CA 406 1_555 B O3 MAN . B MAN 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.538 ? metalc ? metalc22 D CA CA . A CA 406 1_555 B O4 MAN . B MAN 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.621 ? metalc ? metalc23 E CA CA . A CA 407 1_555 F O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc24 E CA CA . A CA 407 1_555 F O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc25 E CA CA . A CA 407 1_555 F O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2IT6 _atom_sites.fract_transf_matrix[1][1] 0.017973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 405 401 CA CA2 . D 3 CA A 1 406 402 CA CA2 . E 3 CA A 1 407 403 CA CA2 . F 4 HOH A 1 408 1 HOH TIP . F 4 HOH A 2 409 2 HOH TIP . F 4 HOH A 3 410 3 HOH TIP . F 4 HOH A 4 411 4 HOH TIP . F 4 HOH A 5 412 5 HOH TIP . F 4 HOH A 6 413 6 HOH TIP . F 4 HOH A 7 414 7 HOH TIP . F 4 HOH A 8 415 8 HOH TIP . F 4 HOH A 9 416 9 HOH TIP . F 4 HOH A 10 417 10 HOH TIP . F 4 HOH A 11 418 11 HOH TIP . F 4 HOH A 12 419 12 HOH TIP . F 4 HOH A 13 420 13 HOH TIP . F 4 HOH A 14 421 14 HOH TIP . F 4 HOH A 15 422 15 HOH TIP . F 4 HOH A 16 423 16 HOH TIP . F 4 HOH A 17 424 17 HOH TIP . F 4 HOH A 18 425 18 HOH TIP . F 4 HOH A 19 426 19 HOH TIP . F 4 HOH A 20 427 20 HOH TIP . F 4 HOH A 21 428 21 HOH TIP . F 4 HOH A 22 429 22 HOH TIP . F 4 HOH A 23 430 23 HOH TIP . F 4 HOH A 24 431 24 HOH TIP . F 4 HOH A 25 432 25 HOH TIP . F 4 HOH A 26 433 26 HOH TIP . F 4 HOH A 27 434 27 HOH TIP . F 4 HOH A 28 435 28 HOH TIP . F 4 HOH A 29 436 29 HOH TIP . F 4 HOH A 30 437 30 HOH TIP . F 4 HOH A 31 438 31 HOH TIP . F 4 HOH A 32 439 32 HOH TIP . F 4 HOH A 33 440 33 HOH TIP . F 4 HOH A 34 441 34 HOH TIP . F 4 HOH A 35 442 35 HOH TIP . F 4 HOH A 36 443 36 HOH TIP . F 4 HOH A 37 444 37 HOH TIP . F 4 HOH A 38 445 38 HOH TIP . F 4 HOH A 39 446 39 HOH TIP . F 4 HOH A 40 447 40 HOH TIP . F 4 HOH A 41 448 41 HOH TIP . F 4 HOH A 42 449 42 HOH TIP . F 4 HOH A 43 450 43 HOH TIP . F 4 HOH A 44 451 44 HOH TIP . F 4 HOH A 45 452 45 HOH TIP . F 4 HOH A 46 453 46 HOH TIP . F 4 HOH A 47 454 47 HOH TIP . F 4 HOH A 48 455 48 HOH TIP . F 4 HOH A 49 456 49 HOH TIP . F 4 HOH A 50 457 50 HOH TIP . F 4 HOH A 51 458 51 HOH TIP . F 4 HOH A 52 459 52 HOH TIP . F 4 HOH A 53 460 53 HOH TIP . F 4 HOH A 54 461 54 HOH TIP . F 4 HOH A 55 462 55 HOH TIP . F 4 HOH A 56 463 56 HOH TIP . F 4 HOH A 57 464 57 HOH TIP . F 4 HOH A 58 465 58 HOH TIP . F 4 HOH A 59 466 59 HOH TIP . F 4 HOH A 60 467 60 HOH TIP . F 4 HOH A 61 468 61 HOH TIP . F 4 HOH A 62 469 62 HOH TIP . F 4 HOH A 63 470 63 HOH TIP . F 4 HOH A 64 471 64 HOH TIP . F 4 HOH A 65 472 65 HOH TIP . F 4 HOH A 66 473 66 HOH TIP . F 4 HOH A 67 474 67 HOH TIP . F 4 HOH A 68 475 68 HOH TIP . F 4 HOH A 69 476 69 HOH TIP . F 4 HOH A 70 477 70 HOH TIP . F 4 HOH A 71 478 71 HOH TIP . F 4 HOH A 72 479 72 HOH TIP . F 4 HOH A 73 480 73 HOH TIP . F 4 HOH A 74 481 74 HOH TIP . F 4 HOH A 75 482 75 HOH TIP . F 4 HOH A 76 483 76 HOH TIP . F 4 HOH A 77 484 77 HOH TIP . F 4 HOH A 78 485 78 HOH TIP . F 4 HOH A 79 486 79 HOH TIP . F 4 HOH A 80 487 80 HOH TIP . F 4 HOH A 81 488 81 HOH TIP . F 4 HOH A 82 489 82 HOH TIP . F 4 HOH A 83 490 83 HOH TIP . F 4 HOH A 84 491 84 HOH TIP . F 4 HOH A 85 492 85 HOH TIP . F 4 HOH A 86 493 86 HOH TIP . F 4 HOH A 87 494 87 HOH TIP . F 4 HOH A 88 495 88 HOH TIP . F 4 HOH A 89 496 89 HOH TIP . F 4 HOH A 90 497 90 HOH TIP . F 4 HOH A 91 498 91 HOH TIP . F 4 HOH A 92 499 92 HOH TIP . F 4 HOH A 93 500 93 HOH TIP . F 4 HOH A 94 501 94 HOH TIP . F 4 HOH A 95 502 95 HOH TIP . F 4 HOH A 96 503 96 HOH TIP . F 4 HOH A 97 504 97 HOH TIP . F 4 HOH A 98 505 98 HOH TIP . F 4 HOH A 99 506 99 HOH TIP . F 4 HOH A 100 507 100 HOH TIP . F 4 HOH A 101 508 101 HOH TIP . F 4 HOH A 102 509 102 HOH TIP . F 4 HOH A 103 510 103 HOH TIP . F 4 HOH A 104 511 104 HOH TIP . F 4 HOH A 105 512 105 HOH TIP . F 4 HOH A 106 513 106 HOH TIP . F 4 HOH A 107 514 107 HOH TIP . F 4 HOH A 108 515 108 HOH TIP . F 4 HOH A 109 516 109 HOH TIP . F 4 HOH A 110 517 110 HOH TIP . F 4 HOH A 111 518 111 HOH TIP . F 4 HOH A 112 519 112 HOH TIP . F 4 HOH A 113 520 113 HOH TIP . F 4 HOH A 114 521 114 HOH TIP . F 4 HOH A 115 522 115 HOH TIP . F 4 HOH A 116 523 116 HOH TIP . F 4 HOH A 117 524 117 HOH TIP . F 4 HOH A 118 525 118 HOH TIP . F 4 HOH A 119 526 119 HOH TIP . F 4 HOH A 120 527 120 HOH TIP . F 4 HOH A 121 528 121 HOH TIP . F 4 HOH A 122 529 122 HOH TIP . F 4 HOH A 123 530 123 HOH TIP . F 4 HOH A 124 531 124 HOH TIP . F 4 HOH A 125 532 125 HOH TIP . F 4 HOH A 126 533 126 HOH TIP . F 4 HOH A 127 534 127 HOH TIP . F 4 HOH A 128 535 128 HOH TIP . F 4 HOH A 129 536 129 HOH TIP . F 4 HOH A 130 537 130 HOH TIP . F 4 HOH A 131 538 131 HOH TIP . F 4 HOH A 132 539 132 HOH TIP . F 4 HOH A 133 540 133 HOH TIP . F 4 HOH A 134 541 134 HOH TIP . F 4 HOH A 135 542 135 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 9.067 _atom_site.Cartn_y 29.48 _atom_site.Cartn_z -12.015 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 405 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #