data_2ITD # _model_server_result.job_id 91QRjgaxXCxyBL-D8UMcCA _model_server_result.datetime_utc '2025-03-27 11:11:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2itd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":125}' # _entry.id 2ITD # _exptl.entry_id 2ITD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 137.327 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BARIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ITD _cell.length_a 156.075 _cell.length_b 156.075 _cell.length_c 75.424 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ITD _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 156.075 156.075 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 156.075 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 156.075 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 C OG1 THR 75 C THR 75 1_555 D BA BA . C BA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.229 ? metalc ? metalc2 C O THR 75 C THR 75 1_555 D BA BA . C BA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc3 C OG1 THR 75 C THR 75 4_565 D BA BA . C BA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.229 ? metalc ? metalc4 C O THR 75 C THR 75 4_565 D BA BA . C BA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc5 C OG1 THR 75 C THR 75 3_655 D BA BA . C BA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.229 ? metalc ? metalc6 C O THR 75 C THR 75 3_655 D BA BA . C BA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc7 C OG1 THR 75 C THR 75 2_665 D BA BA . C BA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.228 ? metalc ? metalc8 C O THR 75 C THR 75 2_665 D BA BA . C BA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc9 C O GLY 77 C GLY 77 1_555 E BA BA . C BA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc10 C O GLY 77 C GLY 77 4_565 E BA BA . C BA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc11 C O GLY 77 C GLY 77 3_655 E BA BA . C BA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc12 C O GLY 77 C GLY 77 2_665 E BA BA . C BA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? # _chem_comp.formula 'Ba 2' _chem_comp.formula_weight 137.327 _chem_comp.id BA _chem_comp.mon_nstd_flag . _chem_comp.name 'BARIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ITD _atom_sites.fract_transf_matrix[1][1] 0.006407 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BA C 1 125 101 BA BA . E 4 BA C 1 126 102 BA BA . F 5 HOH A 1 220 2 HOH HOH . F 5 HOH A 2 221 6 HOH HOH . F 5 HOH A 3 222 16 HOH HOH . F 5 HOH A 4 223 17 HOH HOH . F 5 HOH A 5 224 20 HOH HOH . F 5 HOH A 6 225 24 HOH HOH . F 5 HOH A 7 226 25 HOH HOH . F 5 HOH A 8 227 26 HOH HOH . F 5 HOH A 9 228 29 HOH HOH . G 5 HOH B 1 213 3 HOH HOH . G 5 HOH B 2 214 4 HOH HOH . G 5 HOH B 3 215 7 HOH HOH . G 5 HOH B 4 216 9 HOH HOH . G 5 HOH B 5 217 10 HOH HOH . G 5 HOH B 6 218 11 HOH HOH . G 5 HOH B 7 219 12 HOH HOH . G 5 HOH B 8 220 13 HOH HOH . G 5 HOH B 9 221 14 HOH HOH . G 5 HOH B 10 222 15 HOH HOH . G 5 HOH B 11 223 18 HOH HOH . G 5 HOH B 12 224 19 HOH HOH . G 5 HOH B 13 225 21 HOH HOH . G 5 HOH B 14 226 27 HOH HOH . G 5 HOH B 15 227 28 HOH HOH . G 5 HOH B 16 228 30 HOH HOH . G 5 HOH B 17 229 31 HOH HOH . G 5 HOH B 18 230 32 HOH HOH . H 5 HOH C 1 127 1 HOH HOH . H 5 HOH C 2 128 5 HOH HOH . H 5 HOH C 3 129 8 HOH HOH . H 5 HOH C 4 130 22 HOH HOH . H 5 HOH C 5 131 23 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol BA _atom_site.label_atom_id BA _atom_site.label_comp_id BA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 78.038 _atom_site.Cartn_y 78.038 _atom_site.Cartn_z -32.22 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 48.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id BA _atom_site.auth_comp_id BA _atom_site.auth_seq_id 125 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #