data_2ITN # _model_server_result.job_id CsPfchCWAjZbP4PmuAP6Eg _model_server_result.datetime_utc '2024-11-04 23:49:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2itn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2021}' # _entry.id 2ITN # _exptl.entry_id 2ITN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ITN _cell.length_a 145.481 _cell.length_b 145.481 _cell.length_c 145.481 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ITN _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id MG _struct_conn.ptnr1_label_comp_id MG _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id MG _struct_conn.ptnr1_auth_seq_id 2020 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id O1G _struct_conn.ptnr2_label_comp_id ANP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ANP _struct_conn.ptnr2_auth_seq_id 2021 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.839 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2ITN _atom_sites.fract_transf_matrix[1][1] 0.006874 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 2020 2020 MG MG . C 3 ANP A 1 2021 2021 ANP ANP . D 4 HOH A 1 3001 3001 HOH HOH . D 4 HOH A 2 3002 3002 HOH HOH . D 4 HOH A 3 3003 3003 HOH HOH . D 4 HOH A 4 3004 3004 HOH HOH . D 4 HOH A 5 3005 3005 HOH HOH . D 4 HOH A 6 3006 3006 HOH HOH . D 4 HOH A 7 3007 3007 HOH HOH . D 4 HOH A 8 3008 3008 HOH HOH . D 4 HOH A 9 3009 3009 HOH HOH . D 4 HOH A 10 3010 3010 HOH HOH . D 4 HOH A 11 3011 3011 HOH HOH . D 4 HOH A 12 3012 3012 HOH HOH . D 4 HOH A 13 3013 3013 HOH HOH . D 4 HOH A 14 3014 3014 HOH HOH . D 4 HOH A 15 3015 3015 HOH HOH . D 4 HOH A 16 3016 3016 HOH HOH . D 4 HOH A 17 3017 3017 HOH HOH . D 4 HOH A 18 3018 3018 HOH HOH . D 4 HOH A 19 3019 3019 HOH HOH . D 4 HOH A 20 3020 3020 HOH HOH . D 4 HOH A 21 3021 3021 HOH HOH . D 4 HOH A 22 3022 3022 HOH HOH . D 4 HOH A 23 3023 3023 HOH HOH . D 4 HOH A 24 3024 3024 HOH HOH . D 4 HOH A 25 3025 3025 HOH HOH . D 4 HOH A 26 3026 3026 HOH HOH . D 4 HOH A 27 3027 3027 HOH HOH . D 4 HOH A 28 3028 3028 HOH HOH . D 4 HOH A 29 3029 3029 HOH HOH . D 4 HOH A 30 3030 3030 HOH HOH . D 4 HOH A 31 3031 3031 HOH HOH . D 4 HOH A 32 3032 3032 HOH HOH . D 4 HOH A 33 3033 3033 HOH HOH . D 4 HOH A 34 3034 3034 HOH HOH . D 4 HOH A 35 3035 3035 HOH HOH . D 4 HOH A 36 3036 3036 HOH HOH . D 4 HOH A 37 3037 3037 HOH HOH . D 4 HOH A 38 3038 3038 HOH HOH . D 4 HOH A 39 3039 3039 HOH HOH . D 4 HOH A 40 3040 3040 HOH HOH . D 4 HOH A 41 3041 3041 HOH HOH . D 4 HOH A 42 3042 3042 HOH HOH . D 4 HOH A 43 3043 3043 HOH HOH . D 4 HOH A 44 3044 3044 HOH HOH . D 4 HOH A 45 3045 3045 HOH HOH . D 4 HOH A 46 3046 3046 HOH HOH . D 4 HOH A 47 3047 3047 HOH HOH . D 4 HOH A 48 3048 3048 HOH HOH . D 4 HOH A 49 3049 3049 HOH HOH . D 4 HOH A 50 3050 3050 HOH HOH . D 4 HOH A 51 3051 3051 HOH HOH . D 4 HOH A 52 3052 3052 HOH HOH . D 4 HOH A 53 3053 3053 HOH HOH . D 4 HOH A 54 3054 3054 HOH HOH . D 4 HOH A 55 3055 3055 HOH HOH . D 4 HOH A 56 3056 3056 HOH HOH . D 4 HOH A 57 3057 3057 HOH HOH . D 4 HOH A 58 3058 3058 HOH HOH . D 4 HOH A 59 3059 3059 HOH HOH . D 4 HOH A 60 3060 3060 HOH HOH . D 4 HOH A 61 3061 3061 HOH HOH . D 4 HOH A 62 3062 3062 HOH HOH . D 4 HOH A 63 3063 3063 HOH HOH . D 4 HOH A 64 3064 3064 HOH HOH . D 4 HOH A 65 3065 3065 HOH HOH . D 4 HOH A 66 3066 3066 HOH HOH . D 4 HOH A 67 3067 3067 HOH HOH . D 4 HOH A 68 3068 3068 HOH HOH . D 4 HOH A 69 3069 3069 HOH HOH . D 4 HOH A 70 3070 3070 HOH HOH . D 4 HOH A 71 3071 3071 HOH HOH . D 4 HOH A 72 3072 3072 HOH HOH . D 4 HOH A 73 3073 3073 HOH HOH . D 4 HOH A 74 3074 3074 HOH HOH . D 4 HOH A 75 3075 3075 HOH HOH . D 4 HOH A 76 3076 3076 HOH HOH . D 4 HOH A 77 3077 3077 HOH HOH . D 4 HOH A 78 3078 3078 HOH HOH . D 4 HOH A 79 3079 3079 HOH HOH . D 4 HOH A 80 3080 3080 HOH HOH . D 4 HOH A 81 3081 3081 HOH HOH . D 4 HOH A 82 3082 3082 HOH HOH . D 4 HOH A 83 3083 3083 HOH HOH . D 4 HOH A 84 3084 3084 HOH HOH . D 4 HOH A 85 3085 3085 HOH HOH . D 4 HOH A 86 3086 3086 HOH HOH . D 4 HOH A 87 3087 3087 HOH HOH . D 4 HOH A 88 3088 3088 HOH HOH . D 4 HOH A 89 3089 3089 HOH HOH . D 4 HOH A 90 3090 3090 HOH HOH . D 4 HOH A 91 3091 3091 HOH HOH . D 4 HOH A 92 3092 3092 HOH HOH . D 4 HOH A 93 3093 3093 HOH HOH . D 4 HOH A 94 3094 3094 HOH HOH . D 4 HOH A 95 3095 3095 HOH HOH . D 4 HOH A 96 3096 3096 HOH HOH . D 4 HOH A 97 3097 3097 HOH HOH . D 4 HOH A 98 3098 3098 HOH HOH . D 4 HOH A 99 3099 3099 HOH HOH . D 4 HOH A 100 3100 3100 HOH HOH . D 4 HOH A 101 3101 3101 HOH HOH . D 4 HOH A 102 3102 3102 HOH HOH . D 4 HOH A 103 3103 3103 HOH HOH . D 4 HOH A 104 3104 3104 HOH HOH . D 4 HOH A 105 3105 3105 HOH HOH . D 4 HOH A 106 3106 3106 HOH HOH . D 4 HOH A 107 3107 3107 HOH HOH . D 4 HOH A 108 3108 3108 HOH HOH . D 4 HOH A 109 3109 3109 HOH HOH . D 4 HOH A 110 3110 3110 HOH HOH . D 4 HOH A 111 3111 3111 HOH HOH . D 4 HOH A 112 3112 3112 HOH HOH . D 4 HOH A 113 3113 3113 HOH HOH . D 4 HOH A 114 3114 3114 HOH HOH . D 4 HOH A 115 3115 3115 HOH HOH . D 4 HOH A 116 3116 3116 HOH HOH . D 4 HOH A 117 3117 3117 HOH HOH . D 4 HOH A 118 3118 3118 HOH HOH . D 4 HOH A 119 3119 3119 HOH HOH . D 4 HOH A 120 3120 3120 HOH HOH . D 4 HOH A 121 3121 3121 HOH HOH . D 4 HOH A 122 3122 3122 HOH HOH . D 4 HOH A 123 3123 3123 HOH HOH . D 4 HOH A 124 3124 3124 HOH HOH . D 4 HOH A 125 3125 3125 HOH HOH . D 4 HOH A 126 3126 3126 HOH HOH . D 4 HOH A 127 3127 3127 HOH HOH . D 4 HOH A 128 3128 3128 HOH HOH . D 4 HOH A 129 3129 3129 HOH HOH . D 4 HOH A 130 3130 3130 HOH HOH . D 4 HOH A 131 3131 3131 HOH HOH . D 4 HOH A 132 3132 3132 HOH HOH . D 4 HOH A 133 3133 3133 HOH HOH . D 4 HOH A 134 3134 3134 HOH HOH . D 4 HOH A 135 3135 3135 HOH HOH . D 4 HOH A 136 3136 3136 HOH HOH . D 4 HOH A 137 3137 3137 HOH HOH . D 4 HOH A 138 3138 3138 HOH HOH . D 4 HOH A 139 3139 3139 HOH HOH . D 4 HOH A 140 3140 3140 HOH HOH . D 4 HOH A 141 3141 3141 HOH HOH . D 4 HOH A 142 3142 3142 HOH HOH . D 4 HOH A 143 3143 3143 HOH HOH . D 4 HOH A 144 3144 3144 HOH HOH . D 4 HOH A 145 3145 3145 HOH HOH . D 4 HOH A 146 3146 3146 HOH HOH . D 4 HOH A 147 3147 3147 HOH HOH . D 4 HOH A 148 3148 3148 HOH HOH . D 4 HOH A 149 3149 3149 HOH HOH . D 4 HOH A 150 3150 3150 HOH HOH . D 4 HOH A 151 3151 3151 HOH HOH . D 4 HOH A 152 3152 3152 HOH HOH . D 4 HOH A 153 3153 3153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -48.919 -6.716 -26.734 1 105.47 ? PG ANP 2021 A 1 HETATM 2 O O1G ANP . . . C 3 -49.712 -5.579 -27.35 1 106.35 ? O1G ANP 2021 A 1 HETATM 3 O O2G ANP . . . C 3 -48.848 -8.029 -27.474 1 105.65 ? O2G ANP 2021 A 1 HETATM 4 O O3G ANP . . . C 3 -49.258 -6.968 -25.276 1 104.96 ? O3G ANP 2021 A 1 HETATM 5 P PB ANP . . . C 3 -46.657 -5.24 -25.588 1 101.15 ? PB ANP 2021 A 1 HETATM 6 O O1B ANP . . . C 3 -45.895 -6.26 -24.758 1 100.53 ? O1B ANP 2021 A 1 HETATM 7 O O2B ANP . . . C 3 -45.914 -3.998 -26.042 1 100.87 ? O2B ANP 2021 A 1 HETATM 8 N N3B ANP . . . C 3 -47.305 -6.09 -26.96 1 102 ? N3B ANP 2021 A 1 HETATM 9 P PA ANP . . . C 3 -49.131 -3.721 -25.074 1 92.31 ? PA ANP 2021 A 1 HETATM 10 O O1A ANP . . . C 3 -50.475 -4.385 -25.332 1 90.51 ? O1A ANP 2021 A 1 HETATM 11 O O2A ANP . . . C 3 -48.602 -2.705 -26.06 1 93.31 ? O2A ANP 2021 A 1 HETATM 12 O O3A ANP . . . C 3 -47.978 -4.82 -24.729 1 97.45 ? O3A ANP 2021 A 1 HETATM 13 O O5' ANP . . . C 3 -49.149 -3.031 -23.624 1 85.35 ? O5' ANP 2021 A 1 HETATM 14 C C5' ANP . . . C 3 -48.36 -3.619 -22.599 1 75.46 ? C5' ANP 2021 A 1 HETATM 15 C C4' ANP . . . C 3 -48.83 -3.059 -21.278 1 68.93 ? C4' ANP 2021 A 1 HETATM 16 O O4' ANP . . . C 3 -48.933 -1.638 -21.405 1 64.85 ? O4' ANP 2021 A 1 HETATM 17 C C3' ANP . . . C 3 -50.22 -3.531 -20.885 1 65.49 ? C3' ANP 2021 A 1 HETATM 18 O O3' ANP . . . C 3 -50.221 -4.757 -20.169 1 66.53 ? O3' ANP 2021 A 1 HETATM 19 C C2' ANP . . . C 3 -50.615 -2.399 -19.974 1 62.6 ? C2' ANP 2021 A 1 HETATM 20 O O2' ANP . . . C 3 -50.018 -2.582 -18.688 1 62.23 ? O2' ANP 2021 A 1 HETATM 21 C C1' ANP . . . C 3 -50.038 -1.151 -20.647 1 58.88 ? C1' ANP 2021 A 1 HETATM 22 N N9 ANP . . . C 3 -51.086 -0.568 -21.532 1 51.54 ? N9 ANP 2021 A 1 HETATM 23 C C8 ANP . . . C 3 -51.228 -0.789 -22.861 1 49.66 ? C8 ANP 2021 A 1 HETATM 24 N N7 ANP . . . C 3 -52.298 -0.116 -23.356 1 46.47 ? N7 ANP 2021 A 1 HETATM 25 C C5 ANP . . . C 3 -52.872 0.54 -22.326 1 43.68 ? C5 ANP 2021 A 1 HETATM 26 C C6 ANP . . . C 3 -54.044 1.43 -22.146 1 41.28 ? C6 ANP 2021 A 1 HETATM 27 N N6 ANP . . . C 3 -54.851 1.752 -23.176 1 42.77 ? N6 ANP 2021 A 1 HETATM 28 N N1 ANP . . . C 3 -54.296 1.918 -20.93 1 39.97 ? N1 ANP 2021 A 1 HETATM 29 C C2 ANP . . . C 3 -53.511 1.591 -19.889 1 42.6 ? C2 ANP 2021 A 1 HETATM 30 N N3 ANP . . . C 3 -52.436 0.781 -19.977 1 43.33 ? N3 ANP 2021 A 1 HETATM 31 C C4 ANP . . . C 3 -52.074 0.233 -21.141 1 44.6 ? C4 ANP 2021 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #