data_2ITX # _model_server_result.job_id yDV8iY6WJLmRfJUO5PXoAQ _model_server_result.datetime_utc '2024-11-15 17:29:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2itx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2020}' # _entry.id 2ITX # _exptl.entry_id 2ITX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ITX _cell.length_a 144.461 _cell.length_b 144.461 _cell.length_c 144.461 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ITX _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2ITX _atom_sites.fract_transf_matrix[1][1] 0.006922 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 2020 2020 ANP ANP . C 3 HOH A 1 3001 3001 HOH HOH . C 3 HOH A 2 3002 3002 HOH HOH . C 3 HOH A 3 3003 3003 HOH HOH . C 3 HOH A 4 3004 3004 HOH HOH . C 3 HOH A 5 3005 3005 HOH HOH . C 3 HOH A 6 3006 3006 HOH HOH . C 3 HOH A 7 3007 3007 HOH HOH . C 3 HOH A 8 3008 3008 HOH HOH . C 3 HOH A 9 3009 3009 HOH HOH . C 3 HOH A 10 3010 3010 HOH HOH . C 3 HOH A 11 3011 3011 HOH HOH . C 3 HOH A 12 3012 3012 HOH HOH . C 3 HOH A 13 3013 3013 HOH HOH . C 3 HOH A 14 3014 3014 HOH HOH . C 3 HOH A 15 3015 3015 HOH HOH . C 3 HOH A 16 3016 3016 HOH HOH . C 3 HOH A 17 3017 3017 HOH HOH . C 3 HOH A 18 3018 3018 HOH HOH . C 3 HOH A 19 3019 3019 HOH HOH . C 3 HOH A 20 3020 3020 HOH HOH . C 3 HOH A 21 3021 3021 HOH HOH . C 3 HOH A 22 3022 3022 HOH HOH . C 3 HOH A 23 3023 3023 HOH HOH . C 3 HOH A 24 3024 3024 HOH HOH . C 3 HOH A 25 3025 3025 HOH HOH . C 3 HOH A 26 3026 3026 HOH HOH . C 3 HOH A 27 3027 3027 HOH HOH . C 3 HOH A 28 3028 3028 HOH HOH . C 3 HOH A 29 3029 3029 HOH HOH . C 3 HOH A 30 3030 3030 HOH HOH . C 3 HOH A 31 3031 3031 HOH HOH . C 3 HOH A 32 3032 3032 HOH HOH . C 3 HOH A 33 3033 3033 HOH HOH . C 3 HOH A 34 3034 3034 HOH HOH . C 3 HOH A 35 3035 3035 HOH HOH . C 3 HOH A 36 3036 3036 HOH HOH . C 3 HOH A 37 3037 3037 HOH HOH . C 3 HOH A 38 3038 3038 HOH HOH . C 3 HOH A 39 3039 3039 HOH HOH . C 3 HOH A 40 3040 3040 HOH HOH . C 3 HOH A 41 3041 3041 HOH HOH . C 3 HOH A 42 3042 3042 HOH HOH . C 3 HOH A 43 3043 3043 HOH HOH . C 3 HOH A 44 3044 3044 HOH HOH . C 3 HOH A 45 3045 3045 HOH HOH . C 3 HOH A 46 3046 3046 HOH HOH . C 3 HOH A 47 3047 3047 HOH HOH . C 3 HOH A 48 3048 3048 HOH HOH . C 3 HOH A 49 3049 3049 HOH HOH . C 3 HOH A 50 3050 3050 HOH HOH . C 3 HOH A 51 3051 3051 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -48.655 -6.421 -26.177 1 122.83 ? PG ANP 2020 A 1 HETATM 2 O O1G ANP . . . B 2 -49.19 -5.003 -26.303 1 122.11 ? O1G ANP 2020 A 1 HETATM 3 O O2G ANP . . . B 2 -48.759 -7.254 -27.446 1 122.1 ? O2G ANP 2020 A 1 HETATM 4 O O3G ANP . . . B 2 -49.191 -7.199 -24.964 1 122.11 ? O3G ANP 2020 A 1 HETATM 5 P PB ANP . . . B 2 -46.114 -4.996 -24.942 1 119.94 ? PB ANP 2020 A 1 HETATM 6 O O1B ANP . . . B 2 -45.221 -5.76 -23.975 1 119.45 ? O1B ANP 2020 A 1 HETATM 7 O O2B ANP . . . B 2 -45.43 -3.981 -25.882 1 119.92 ? O2B ANP 2020 A 1 HETATM 8 N N3B ANP . . . B 2 -46.899 -6.214 -25.965 1 121.21 ? N3B ANP 2020 A 1 HETATM 9 P PA ANP . . . B 2 -48.041 -2.871 -24.188 1 113.07 ? PA ANP 2020 A 1 HETATM 10 O O1A ANP . . . B 2 -49.507 -3.129 -23.909 1 113.33 ? O1A ANP 2020 A 1 HETATM 11 O O2A ANP . . . B 2 -47.66 -2.156 -25.478 1 112.81 ? O2A ANP 2020 A 1 HETATM 12 O O3A ANP . . . B 2 -47.277 -4.304 -24.025 1 116.46 ? O3A ANP 2020 A 1 HETATM 13 O O5' ANP . . . B 2 -47.443 -2.066 -22.918 1 108.73 ? O5' ANP 2020 A 1 HETATM 14 C C5' ANP . . . B 2 -46.975 -2.769 -21.764 1 103.07 ? C5' ANP 2020 A 1 HETATM 15 C C4' ANP . . . B 2 -47.866 -2.432 -20.57 1 99.74 ? C4' ANP 2020 A 1 HETATM 16 O O4' ANP . . . B 2 -48.213 -1.028 -20.579 1 96.56 ? O4' ANP 2020 A 1 HETATM 17 C C3' ANP . . . B 2 -49.22 -3.162 -20.572 1 97.8 ? C3' ANP 2020 A 1 HETATM 18 O O3' ANP . . . B 2 -49.211 -4.492 -20.035 1 97.78 ? O3' ANP 2020 A 1 HETATM 19 C C2' ANP . . . B 2 -50.106 -2.235 -19.754 1 95.65 ? C2' ANP 2020 A 1 HETATM 20 O O2' ANP . . . B 2 -49.964 -2.45 -18.334 1 95.59 ? O2' ANP 2020 A 1 HETATM 21 C C1' ANP . . . B 2 -49.579 -0.853 -20.13 1 93.18 ? C1' ANP 2020 A 1 HETATM 22 N N9 ANP . . . B 2 -50.495 -0.277 -21.17 1 87.79 ? N9 ANP 2020 A 1 HETATM 23 C C8 ANP . . . B 2 -50.44 -0.471 -22.512 1 84.88 ? C8 ANP 2020 A 1 HETATM 24 N N7 ANP . . . B 2 -51.433 0.201 -23.152 1 82.25 ? N7 ANP 2020 A 1 HETATM 25 C C5 ANP . . . B 2 -52.164 0.847 -22.212 1 82.13 ? C5 ANP 2020 A 1 HETATM 26 C C6 ANP . . . B 2 -53.367 1.742 -22.185 1 80.07 ? C6 ANP 2020 A 1 HETATM 27 N N6 ANP . . . B 2 -54.017 2.097 -23.333 1 77.96 ? N6 ANP 2020 A 1 HETATM 28 N N1 ANP . . . B 2 -53.792 2.196 -20.97 1 79.14 ? N1 ANP 2020 A 1 HETATM 29 C C2 ANP . . . B 2 -53.174 1.854 -19.82 1 80.14 ? C2 ANP 2020 A 1 HETATM 30 N N3 ANP . . . B 2 -52.094 1.045 -19.767 1 82.55 ? N3 ANP 2020 A 1 HETATM 31 C C4 ANP . . . B 2 -51.546 0.52 -20.905 1 84.25 ? C4 ANP 2020 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #