data_2IU9 # _model_server_result.job_id dVPII3B6adAoN92uT44wLQ _model_server_result.datetime_utc '2025-03-04 22:26:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2iu9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1347}' # _entry.id 2IU9 # _exptl.entry_id 2IU9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 607.354 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IU9 _cell.length_a 98.871 _cell.length_b 98.872 _cell.length_c 283.053 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 N N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 208 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 188 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id O1 _struct_conn.ptnr2_label_comp_id BME _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BME _struct_conn.ptnr2_auth_seq_id 1347 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.06 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H27 N3 O17 P2' _chem_comp.formula_weight 607.354 _chem_comp.id UD1 _chem_comp.mon_nstd_flag . _chem_comp.name URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1' C2' UD1 sing 392 n n C1' O1' UD1 sing 393 n n C1' O5' UD1 sing 394 n n C1' H1' UD1 sing 395 n n C2' C3' UD1 sing 396 n n C2' N2' UD1 sing 397 n n C2' H2' UD1 sing 398 n n C3' C4' UD1 sing 399 n n C3' O3' UD1 sing 400 n n C3' H3' UD1 sing 401 n n C4' C5' UD1 sing 402 n n C4' O4' UD1 sing 403 n n C4' H4' UD1 sing 404 n n C5' C6' UD1 sing 405 n n C5' O5' UD1 sing 406 n n C5' H5' UD1 sing 407 n n C6' O6' UD1 sing 408 n n C6' "H6'1" UD1 sing 409 n n C6' "H6'2" UD1 sing 410 n n C7' C8' UD1 sing 411 n n C7' N2' UD1 sing 412 n n C7' O7' UD1 doub 413 n n C8' "H8'1" UD1 sing 414 n n C8' "H8'2" UD1 sing 415 n n C8' "H8'3" UD1 sing 416 n n N2' HN2' UD1 sing 417 n n O1' PB UD1 sing 418 n n O3' HO3' UD1 sing 419 n n O4' HO4' UD1 sing 420 n n O6' HO6' UD1 sing 421 n n N1 C2 UD1 sing 422 n n N1 C6 UD1 sing 423 n n N1 C1B UD1 sing 424 n n C2 N3 UD1 sing 425 n n C2 O2 UD1 doub 426 n n N3 C4 UD1 sing 427 n n N3 HN3 UD1 sing 428 n n C4 C5 UD1 sing 429 n n C4 O4 UD1 doub 430 n n C5 C6 UD1 doub 431 n n C5 H5 UD1 sing 432 n n C6 H6 UD1 sing 433 n n C1B C2B UD1 sing 434 n n C1B O4B UD1 sing 435 n n C1B H1B UD1 sing 436 n n C2B O2' UD1 sing 437 n n C2B C3B UD1 sing 438 n n C2B H2B UD1 sing 439 n n O2' HO2' UD1 sing 440 n n C3B C4B UD1 sing 441 n n C3B O3B UD1 sing 442 n n C3B H3B UD1 sing 443 n n C4B O4B UD1 sing 444 n n C4B C5B UD1 sing 445 n n C4B H4B UD1 sing 446 n n O3B HO3A UD1 sing 447 n n C5B O5B UD1 sing 448 n n C5B "H5'1" UD1 sing 449 n n C5B "H5'2" UD1 sing 450 n n O5B PA UD1 sing 451 n n PA O1A UD1 doub 452 n n PA O2A UD1 sing 453 n n PA O3A UD1 sing 454 n n O2A HOA2 UD1 sing 455 n n O3A PB UD1 sing 456 n n PB O1B UD1 doub 457 n n PB O2B UD1 sing 458 n n O2B HOB2 UD1 sing 459 n n # _atom_sites.entry_id 2IU9 _atom_sites.fract_transf_matrix[1][1] 0.010114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 BME A 1 1347 1347 BME BME . E 3 SO4 A 1 1348 1348 SO4 SO4 . F 3 SO4 A 1 1349 1349 SO4 SO4 . G 4 PLM A 1 1350 1350 PLM PLM . H 3 SO4 B 1 1346 1346 SO4 SO4 . I 5 UD1 B 1 1347 1347 UD1 UD1 . J 4 PLM B 1 1348 1348 PLM PLM . K 3 SO4 B 1 1351 1351 SO4 SO4 . L 3 SO4 C 1 1349 1349 SO4 SO4 . M 3 SO4 C 1 1350 1350 SO4 SO4 . N 5 UD1 C 1 1351 1351 UD1 UD1 . O 4 PLM C 1 1352 1352 PLM PLM . P 6 HOH A 1 2001 2001 HOH HOH . P 6 HOH A 2 2002 2002 HOH HOH . P 6 HOH A 3 2003 2003 HOH HOH . P 6 HOH A 4 2004 2004 HOH HOH . P 6 HOH A 5 2005 2005 HOH HOH . P 6 HOH A 6 2006 2006 HOH HOH . P 6 HOH A 7 2007 2007 HOH HOH . P 6 HOH A 8 2008 2008 HOH HOH . P 6 HOH A 9 2009 2009 HOH HOH . P 6 HOH A 10 2010 2010 HOH HOH . P 6 HOH A 11 2011 2011 HOH HOH . P 6 HOH A 12 2012 2012 HOH HOH . P 6 HOH A 13 2013 2013 HOH HOH . P 6 HOH A 14 2014 2014 HOH HOH . P 6 HOH A 15 2015 2015 HOH HOH . P 6 HOH A 16 2016 2016 HOH HOH . P 6 HOH A 17 2017 2017 HOH HOH . P 6 HOH A 18 2018 2018 HOH HOH . P 6 HOH A 19 2019 2019 HOH HOH . P 6 HOH A 20 2020 2020 HOH HOH . P 6 HOH A 21 2021 2021 HOH HOH . P 6 HOH A 22 2022 2022 HOH HOH . P 6 HOH A 23 2023 2023 HOH HOH . P 6 HOH A 24 2024 2024 HOH HOH . P 6 HOH A 25 2025 2025 HOH HOH . P 6 HOH A 26 2026 2026 HOH HOH . P 6 HOH A 27 2027 2027 HOH HOH . P 6 HOH A 28 2028 2028 HOH HOH . P 6 HOH A 29 2029 2029 HOH HOH . P 6 HOH A 30 2030 2030 HOH HOH . P 6 HOH A 31 2031 2031 HOH HOH . P 6 HOH A 32 2032 2032 HOH HOH . P 6 HOH A 33 2033 2033 HOH HOH . P 6 HOH A 34 2034 2034 HOH HOH . P 6 HOH A 35 2035 2035 HOH HOH . P 6 HOH A 36 2036 2036 HOH HOH . P 6 HOH A 37 2037 2037 HOH HOH . P 6 HOH A 38 2038 2038 HOH HOH . P 6 HOH A 39 2039 2039 HOH HOH . P 6 HOH A 40 2040 2040 HOH HOH . P 6 HOH A 41 2041 2041 HOH HOH . P 6 HOH A 42 2042 2042 HOH HOH . P 6 HOH A 43 2043 2043 HOH HOH . P 6 HOH A 44 2044 2044 HOH HOH . P 6 HOH A 45 2045 2045 HOH HOH . P 6 HOH A 46 2046 2046 HOH HOH . P 6 HOH A 47 2047 2047 HOH HOH . Q 6 HOH B 1 2001 2001 HOH HOH . Q 6 HOH B 2 2002 2002 HOH HOH . Q 6 HOH B 3 2003 2003 HOH HOH . Q 6 HOH B 4 2004 2004 HOH HOH . Q 6 HOH B 5 2005 2005 HOH HOH . Q 6 HOH B 6 2006 2006 HOH HOH . Q 6 HOH B 7 2007 2007 HOH HOH . Q 6 HOH B 8 2008 2008 HOH HOH . Q 6 HOH B 9 2009 2009 HOH HOH . Q 6 HOH B 10 2010 2010 HOH HOH . Q 6 HOH B 11 2011 2011 HOH HOH . Q 6 HOH B 12 2012 2012 HOH HOH . Q 6 HOH B 13 2013 2013 HOH HOH . Q 6 HOH B 14 2014 2014 HOH HOH . Q 6 HOH B 15 2015 2015 HOH HOH . Q 6 HOH B 16 2016 2016 HOH HOH . Q 6 HOH B 17 2017 2017 HOH HOH . Q 6 HOH B 18 2018 2018 HOH HOH . Q 6 HOH B 19 2019 2019 HOH HOH . Q 6 HOH B 20 2020 2020 HOH HOH . Q 6 HOH B 21 2021 2021 HOH HOH . Q 6 HOH B 22 2022 2022 HOH HOH . Q 6 HOH B 23 2023 2023 HOH HOH . Q 6 HOH B 24 2024 2024 HOH HOH . Q 6 HOH B 25 2025 2025 HOH HOH . Q 6 HOH B 26 2026 2026 HOH HOH . Q 6 HOH B 27 2027 2027 HOH HOH . Q 6 HOH B 28 2028 2028 HOH HOH . Q 6 HOH B 29 2029 2029 HOH HOH . Q 6 HOH B 30 2030 2030 HOH HOH . Q 6 HOH B 31 2031 2031 HOH HOH . Q 6 HOH B 32 2032 2032 HOH HOH . R 6 HOH C 1 2001 2001 HOH HOH . R 6 HOH C 2 2002 2002 HOH HOH . R 6 HOH C 3 2003 2003 HOH HOH . R 6 HOH C 4 2004 2004 HOH HOH . R 6 HOH C 5 2005 2005 HOH HOH . R 6 HOH C 6 2006 2006 HOH HOH . R 6 HOH C 7 2007 2007 HOH HOH . R 6 HOH C 8 2008 2008 HOH HOH . R 6 HOH C 9 2009 2009 HOH HOH . R 6 HOH C 10 2010 2010 HOH HOH . R 6 HOH C 11 2011 2011 HOH HOH . R 6 HOH C 12 2012 2012 HOH HOH . R 6 HOH C 13 2013 2013 HOH HOH . R 6 HOH C 14 2014 2014 HOH HOH . R 6 HOH C 15 2015 2015 HOH HOH . R 6 HOH C 16 2016 2016 HOH HOH . R 6 HOH C 17 2017 2017 HOH HOH . R 6 HOH C 18 2018 2018 HOH HOH . R 6 HOH C 19 2019 2019 HOH HOH . R 6 HOH C 20 2020 2020 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' UD1 . . . I 5 38.188 -84.517 -23.549 0.75 85.5 ? C1' UD1 1347 B 1 HETATM 2 C C2' UD1 . . . I 5 37.856 -85.936 -24.014 0.75 86.06 ? C2' UD1 1347 B 1 HETATM 3 C C3' UD1 . . . I 5 36.815 -86.558 -23.06 0.75 86.4 ? C3' UD1 1347 B 1 HETATM 4 C C4' UD1 . . . I 5 37.194 -86.442 -21.567 0.75 86.24 ? C4' UD1 1347 B 1 HETATM 5 C C5' UD1 . . . I 5 37.988 -85.152 -21.221 0.75 86.07 ? C5' UD1 1347 B 1 HETATM 6 C C6' UD1 . . . I 5 38.828 -85.387 -19.95 0.75 86.06 ? C6' UD1 1347 B 1 HETATM 7 C C7' UD1 . . . I 5 37.382 -86.765 -26.338 0.75 86.29 ? C7' UD1 1347 B 1 HETATM 8 C C8' UD1 . . . I 5 38.173 -88.07 -26.057 0.75 86.33 ? C8' UD1 1347 B 1 HETATM 9 N N2' UD1 . . . I 5 37.285 -85.846 -25.367 0.75 86.08 ? N2' UD1 1347 B 1 HETATM 10 O O1' UD1 . . . I 5 36.918 -83.808 -23.422 0.75 84.31 ? O1' UD1 1347 B 1 HETATM 11 O O3' UD1 . . . I 5 36.597 -87.931 -23.395 0.75 86.87 ? O3' UD1 1347 B 1 HETATM 12 O O4' UD1 . . . I 5 35.976 -86.455 -20.816 0.75 86.05 ? O4' UD1 1347 B 1 HETATM 13 O O5' UD1 . . . I 5 38.87 -84.639 -22.281 0.75 85.67 ? O5' UD1 1347 B 1 HETATM 14 O O6' UD1 . . . I 5 39.538 -84.184 -19.58 0.75 86.01 ? O6' UD1 1347 B 1 HETATM 15 O O7' UD1 . . . I 5 36.862 -86.591 -27.434 0.75 86.56 ? O7' UD1 1347 B 1 HETATM 16 N N1 UD1 . . . I 5 33.627 -78.297 -24.424 0.75 72.1 ? N1 UD1 1347 B 1 HETATM 17 C C2 UD1 . . . I 5 33.109 -77.068 -23.968 0.75 71.76 ? C2 UD1 1347 B 1 HETATM 18 N N3 UD1 . . . I 5 32.965 -76.846 -22.594 0.75 71.62 ? N3 UD1 1347 B 1 HETATM 19 C C4 UD1 . . . I 5 33.332 -77.843 -21.682 0.75 71.93 ? C4 UD1 1347 B 1 HETATM 20 C C5 UD1 . . . I 5 33.841 -79.056 -22.133 0.75 71.94 ? C5 UD1 1347 B 1 HETATM 21 C C6 UD1 . . . I 5 33.988 -79.288 -23.497 0.75 71.94 ? C6 UD1 1347 B 1 HETATM 22 O O2 UD1 . . . I 5 32.781 -76.182 -24.756 0.75 71.61 ? O2 UD1 1347 B 1 HETATM 23 O O4 UD1 . . . I 5 33.208 -77.646 -20.475 0.75 71.96 ? O4 UD1 1347 B 1 HETATM 24 C C1B UD1 . . . I 5 33.779 -78.558 -25.877 0.75 72.73 ? C1B UD1 1347 B 1 HETATM 25 C C2B UD1 . . . I 5 35.209 -78.432 -26.38 0.75 73.32 ? C2B UD1 1347 B 1 HETATM 26 O O2' UD1 . . . I 5 35.521 -77.055 -26.62 0.75 73.29 ? O2' UD1 1347 B 1 HETATM 27 C C3B UD1 . . . I 5 35.132 -79.21 -27.692 0.75 73.88 ? C3B UD1 1347 B 1 HETATM 28 C C4B UD1 . . . I 5 33.892 -80.099 -27.528 0.75 74.35 ? C4B UD1 1347 B 1 HETATM 29 O O4B UD1 . . . I 5 33.488 -79.933 -26.158 0.75 73.66 ? O4B UD1 1347 B 1 HETATM 30 O O3B UD1 . . . I 5 34.91 -78.316 -28.786 0.75 74.13 ? O3B UD1 1347 B 1 HETATM 31 C C5B UD1 . . . I 5 34.315 -81.545 -27.807 0.75 75.94 ? C5B UD1 1347 B 1 HETATM 32 O O5B UD1 . . . I 5 34.153 -82.389 -26.653 0.75 77.83 ? O5B UD1 1347 B 1 HETATM 33 P PA UD1 . . . I 5 35.412 -83.052 -25.882 0.75 78.74 ? PA UD1 1347 B 1 HETATM 34 O O1A UD1 . . . I 5 36.654 -82.831 -26.649 0.75 78.54 ? O1A UD1 1347 B 1 HETATM 35 O O2A UD1 . . . I 5 35.042 -84.426 -25.481 0.75 78.81 ? O2A UD1 1347 B 1 HETATM 36 O O3A UD1 . . . I 5 35.446 -82.147 -24.59 0.75 80.79 ? O3A UD1 1347 B 1 HETATM 37 P PB UD1 . . . I 5 36.736 -82.222 -23.655 0.75 83.13 ? PB UD1 1347 B 1 HETATM 38 O O1B UD1 . . . I 5 36.393 -81.583 -22.356 0.75 83.22 ? O1B UD1 1347 B 1 HETATM 39 O O2B UD1 . . . I 5 37.876 -81.715 -24.452 0.75 83.48 ? O2B UD1 1347 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #