data_2IU9
#
_model_server_result.job_id            lJRyOdgPrRgNcC3kOh25BA 
_model_server_result.datetime_utc      '2025-03-04 22:27:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2iu9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1351}' 
#
_entry.id    2IU9 
#
_exptl.entry_id    2IU9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              607.354 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2IU9 
_cell.length_a            98.871 
_cell.length_b            98.872 
_cell.length_c            283.053 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2IU9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 N N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             208 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              188 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            O1 
_struct_conn.ptnr2_label_comp_id            BME 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             BME 
_struct_conn.ptnr2_auth_seq_id              1347 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        A 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.06 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C17 H27 N3 O17 P2' 
_chem_comp.formula_weight    607.354 
_chem_comp.id                UD1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1' C2' UD1 sing 392 n n 
C1' O1' UD1 sing 393 n n 
C1' O5' UD1 sing 394 n n 
C1' H1' UD1 sing 395 n n 
C2' C3' UD1 sing 396 n n 
C2' N2' UD1 sing 397 n n 
C2' H2' UD1 sing 398 n n 
C3' C4' UD1 sing 399 n n 
C3' O3' UD1 sing 400 n n 
C3' H3' UD1 sing 401 n n 
C4' C5' UD1 sing 402 n n 
C4' O4' UD1 sing 403 n n 
C4' H4' UD1 sing 404 n n 
C5' C6' UD1 sing 405 n n 
C5' O5' UD1 sing 406 n n 
C5' H5' UD1 sing 407 n n 
C6' O6' UD1 sing 408 n n 
C6' "H6'1" UD1 sing 409 n n 
C6' "H6'2" UD1 sing 410 n n 
C7' C8' UD1 sing 411 n n 
C7' N2' UD1 sing 412 n n 
C7' O7' UD1 doub 413 n n 
C8' "H8'1" UD1 sing 414 n n 
C8' "H8'2" UD1 sing 415 n n 
C8' "H8'3" UD1 sing 416 n n 
N2' HN2' UD1 sing 417 n n 
O1' PB UD1 sing 418 n n 
O3' HO3' UD1 sing 419 n n 
O4' HO4' UD1 sing 420 n n 
O6' HO6' UD1 sing 421 n n 
N1 C2 UD1 sing 422 n n 
N1 C6 UD1 sing 423 n n 
N1 C1B UD1 sing 424 n n 
C2 N3 UD1 sing 425 n n 
C2 O2 UD1 doub 426 n n 
N3 C4 UD1 sing 427 n n 
N3 HN3 UD1 sing 428 n n 
C4 C5 UD1 sing 429 n n 
C4 O4 UD1 doub 430 n n 
C5 C6 UD1 doub 431 n n 
C5 H5 UD1 sing 432 n n 
C6 H6 UD1 sing 433 n n 
C1B C2B UD1 sing 434 n n 
C1B O4B UD1 sing 435 n n 
C1B H1B UD1 sing 436 n n 
C2B O2' UD1 sing 437 n n 
C2B C3B UD1 sing 438 n n 
C2B H2B UD1 sing 439 n n 
O2' HO2' UD1 sing 440 n n 
C3B C4B UD1 sing 441 n n 
C3B O3B UD1 sing 442 n n 
C3B H3B UD1 sing 443 n n 
C4B O4B UD1 sing 444 n n 
C4B C5B UD1 sing 445 n n 
C4B H4B UD1 sing 446 n n 
O3B HO3A UD1 sing 447 n n 
C5B O5B UD1 sing 448 n n 
C5B "H5'1" UD1 sing 449 n n 
C5B "H5'2" UD1 sing 450 n n 
O5B PA UD1 sing 451 n n 
PA O1A UD1 doub 452 n n 
PA O2A UD1 sing 453 n n 
PA O3A UD1 sing 454 n n 
O2A HOA2 UD1 sing 455 n n 
O3A PB UD1 sing 456 n n 
PB O1B UD1 doub 457 n n 
PB O2B UD1 sing 458 n n 
O2B HOB2 UD1 sing 459 n n 
#
_atom_sites.entry_id                     2IU9 
_atom_sites.fract_transf_matrix[1][1]    0.010114 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010114 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003533 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 BME A 1 1347 1347 BME BME . 
E 3 SO4 A 1 1348 1348 SO4 SO4 . 
F 3 SO4 A 1 1349 1349 SO4 SO4 . 
G 4 PLM A 1 1350 1350 PLM PLM . 
H 3 SO4 B 1 1346 1346 SO4 SO4 . 
I 5 UD1 B 1 1347 1347 UD1 UD1 . 
J 4 PLM B 1 1348 1348 PLM PLM . 
K 3 SO4 B 1 1351 1351 SO4 SO4 . 
L 3 SO4 C 1 1349 1349 SO4 SO4 . 
M 3 SO4 C 1 1350 1350 SO4 SO4 . 
N 5 UD1 C 1 1351 1351 UD1 UD1 . 
O 4 PLM C 1 1352 1352 PLM PLM . 
P 6 HOH A 1 2001 2001 HOH HOH . 
P 6 HOH A 2 2002 2002 HOH HOH . 
P 6 HOH A 3 2003 2003 HOH HOH . 
P 6 HOH A 4 2004 2004 HOH HOH . 
P 6 HOH A 5 2005 2005 HOH HOH . 
P 6 HOH A 6 2006 2006 HOH HOH . 
P 6 HOH A 7 2007 2007 HOH HOH . 
P 6 HOH A 8 2008 2008 HOH HOH . 
P 6 HOH A 9 2009 2009 HOH HOH . 
P 6 HOH A 10 2010 2010 HOH HOH . 
P 6 HOH A 11 2011 2011 HOH HOH . 
P 6 HOH A 12 2012 2012 HOH HOH . 
P 6 HOH A 13 2013 2013 HOH HOH . 
P 6 HOH A 14 2014 2014 HOH HOH . 
P 6 HOH A 15 2015 2015 HOH HOH . 
P 6 HOH A 16 2016 2016 HOH HOH . 
P 6 HOH A 17 2017 2017 HOH HOH . 
P 6 HOH A 18 2018 2018 HOH HOH . 
P 6 HOH A 19 2019 2019 HOH HOH . 
P 6 HOH A 20 2020 2020 HOH HOH . 
P 6 HOH A 21 2021 2021 HOH HOH . 
P 6 HOH A 22 2022 2022 HOH HOH . 
P 6 HOH A 23 2023 2023 HOH HOH . 
P 6 HOH A 24 2024 2024 HOH HOH . 
P 6 HOH A 25 2025 2025 HOH HOH . 
P 6 HOH A 26 2026 2026 HOH HOH . 
P 6 HOH A 27 2027 2027 HOH HOH . 
P 6 HOH A 28 2028 2028 HOH HOH . 
P 6 HOH A 29 2029 2029 HOH HOH . 
P 6 HOH A 30 2030 2030 HOH HOH . 
P 6 HOH A 31 2031 2031 HOH HOH . 
P 6 HOH A 32 2032 2032 HOH HOH . 
P 6 HOH A 33 2033 2033 HOH HOH . 
P 6 HOH A 34 2034 2034 HOH HOH . 
P 6 HOH A 35 2035 2035 HOH HOH . 
P 6 HOH A 36 2036 2036 HOH HOH . 
P 6 HOH A 37 2037 2037 HOH HOH . 
P 6 HOH A 38 2038 2038 HOH HOH . 
P 6 HOH A 39 2039 2039 HOH HOH . 
P 6 HOH A 40 2040 2040 HOH HOH . 
P 6 HOH A 41 2041 2041 HOH HOH . 
P 6 HOH A 42 2042 2042 HOH HOH . 
P 6 HOH A 43 2043 2043 HOH HOH . 
P 6 HOH A 44 2044 2044 HOH HOH . 
P 6 HOH A 45 2045 2045 HOH HOH . 
P 6 HOH A 46 2046 2046 HOH HOH . 
P 6 HOH A 47 2047 2047 HOH HOH . 
Q 6 HOH B 1 2001 2001 HOH HOH . 
Q 6 HOH B 2 2002 2002 HOH HOH . 
Q 6 HOH B 3 2003 2003 HOH HOH . 
Q 6 HOH B 4 2004 2004 HOH HOH . 
Q 6 HOH B 5 2005 2005 HOH HOH . 
Q 6 HOH B 6 2006 2006 HOH HOH . 
Q 6 HOH B 7 2007 2007 HOH HOH . 
Q 6 HOH B 8 2008 2008 HOH HOH . 
Q 6 HOH B 9 2009 2009 HOH HOH . 
Q 6 HOH B 10 2010 2010 HOH HOH . 
Q 6 HOH B 11 2011 2011 HOH HOH . 
Q 6 HOH B 12 2012 2012 HOH HOH . 
Q 6 HOH B 13 2013 2013 HOH HOH . 
Q 6 HOH B 14 2014 2014 HOH HOH . 
Q 6 HOH B 15 2015 2015 HOH HOH . 
Q 6 HOH B 16 2016 2016 HOH HOH . 
Q 6 HOH B 17 2017 2017 HOH HOH . 
Q 6 HOH B 18 2018 2018 HOH HOH . 
Q 6 HOH B 19 2019 2019 HOH HOH . 
Q 6 HOH B 20 2020 2020 HOH HOH . 
Q 6 HOH B 21 2021 2021 HOH HOH . 
Q 6 HOH B 22 2022 2022 HOH HOH . 
Q 6 HOH B 23 2023 2023 HOH HOH . 
Q 6 HOH B 24 2024 2024 HOH HOH . 
Q 6 HOH B 25 2025 2025 HOH HOH . 
Q 6 HOH B 26 2026 2026 HOH HOH . 
Q 6 HOH B 27 2027 2027 HOH HOH . 
Q 6 HOH B 28 2028 2028 HOH HOH . 
Q 6 HOH B 29 2029 2029 HOH HOH . 
Q 6 HOH B 30 2030 2030 HOH HOH . 
Q 6 HOH B 31 2031 2031 HOH HOH . 
Q 6 HOH B 32 2032 2032 HOH HOH . 
R 6 HOH C 1 2001 2001 HOH HOH . 
R 6 HOH C 2 2002 2002 HOH HOH . 
R 6 HOH C 3 2003 2003 HOH HOH . 
R 6 HOH C 4 2004 2004 HOH HOH . 
R 6 HOH C 5 2005 2005 HOH HOH . 
R 6 HOH C 6 2006 2006 HOH HOH . 
R 6 HOH C 7 2007 2007 HOH HOH . 
R 6 HOH C 8 2008 2008 HOH HOH . 
R 6 HOH C 9 2009 2009 HOH HOH . 
R 6 HOH C 10 2010 2010 HOH HOH . 
R 6 HOH C 11 2011 2011 HOH HOH . 
R 6 HOH C 12 2012 2012 HOH HOH . 
R 6 HOH C 13 2013 2013 HOH HOH . 
R 6 HOH C 14 2014 2014 HOH HOH . 
R 6 HOH C 15 2015 2015 HOH HOH . 
R 6 HOH C 16 2016 2016 HOH HOH . 
R 6 HOH C 17 2017 2017 HOH HOH . 
R 6 HOH C 18 2018 2018 HOH HOH . 
R 6 HOH C 19 2019 2019 HOH HOH . 
R 6 HOH C 20 2020 2020 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1' UD1 . . . N 5 49.884 -118.108 -30.773 0.5 76.46 ? C1' UD1 1351 C 1 
HETATM 2 C C2' UD1 . . . N 5 48.608 -117.257 -30.83 0.5 76.43 ? C2' UD1 1351 C 1 
HETATM 3 C C3' UD1 . . . N 5 47.414 -118.184 -31.014 0.5 76.36 ? C3' UD1 1351 C 1 
HETATM 4 C C4' UD1 . . . N 5 47.512 -118.967 -32.322 0.5 76.19 ? C4' UD1 1351 C 1 
HETATM 5 C C5' UD1 . . . N 5 48.789 -119.828 -32.226 0.5 76.09 ? C5' UD1 1351 C 1 
HETATM 6 C C6' UD1 . . . N 5 49.061 -120.736 -33.427 0.5 75.72 ? C6' UD1 1351 C 1 
HETATM 7 C C7' UD1 . . . N 5 48.847 -115.251 -29.416 0.5 77.19 ? C7' UD1 1351 C 1 
HETATM 8 C C8' UD1 . . . N 5 48.611 -114.677 -28.03 0.5 77.11 ? C8' UD1 1351 C 1 
HETATM 9 N N2' UD1 . . . N 5 48.459 -116.524 -29.562 0.5 76.75 ? N2' UD1 1351 C 1 
HETATM 10 O O1' UD1 . . . N 5 49.915 -118.704 -29.431 0.5 76.68 ? O1' UD1 1351 C 1 
HETATM 11 O O3' UD1 . . . N 5 46.191 -117.477 -30.89 0.5 77.18 ? O3' UD1 1351 C 1 
HETATM 12 O O4' UD1 . . . N 5 46.355 -119.814 -32.449 0.5 75.96 ? O4' UD1 1351 C 1 
HETATM 13 O O5' UD1 . . . N 5 49.992 -119.02 -31.935 0.5 76.4 ? O5' UD1 1351 C 1 
HETATM 14 O O6' UD1 . . . N 5 49.517 -122.009 -32.898 0.5 75.26 ? O6' UD1 1351 C 1 
HETATM 15 O O7' UD1 . . . N 5 49.357 -114.553 -30.301 0.5 77.71 ? O7' UD1 1351 C 1 
HETATM 16 N N1 UD1 . . . N 5 46.436 -123.683 -25.662 0.5 73.13 ? N1 UD1 1351 C 1 
HETATM 17 C C2 UD1 . . . N 5 46.378 -124.923 -24.995 0.5 73.06 ? C2 UD1 1351 C 1 
HETATM 18 N N3 UD1 . . . N 5 47.558 -125.662 -24.797 0.5 73 ? N3 UD1 1351 C 1 
HETATM 19 C C4 UD1 . . . N 5 48.792 -125.167 -25.256 0.5 72.93 ? C4 UD1 1351 C 1 
HETATM 20 C C5 UD1 . . . N 5 48.849 -123.944 -25.918 0.5 72.73 ? C5 UD1 1351 C 1 
HETATM 21 C C6 UD1 . . . N 5 47.684 -123.211 -26.115 0.5 72.79 ? C6 UD1 1351 C 1 
HETATM 22 O O2 UD1 . . . N 5 45.298 -125.38 -24.591 0.5 72.79 ? O2 UD1 1351 C 1 
HETATM 23 O O4 UD1 . . . N 5 49.823 -125.813 -25.077 0.5 72.93 ? O4 UD1 1351 C 1 
HETATM 24 C C1B UD1 . . . N 5 45.183 -122.895 -25.888 0.5 73.39 ? C1B UD1 1351 C 1 
HETATM 25 C C2B UD1 . . . N 5 45.225 -121.456 -25.366 0.5 73.58 ? C2B UD1 1351 C 1 
HETATM 26 O O2' UD1 . . . N 5 44.768 -121.419 -24.007 0.5 73.66 ? O2' UD1 1351 C 1 
HETATM 27 C C3B UD1 . . . N 5 44.246 -120.726 -26.293 0.5 73.78 ? C3B UD1 1351 C 1 
HETATM 28 C C4B UD1 . . . N 5 44.065 -121.667 -27.497 0.5 74.25 ? C4B UD1 1351 C 1 
HETATM 29 O O4B UD1 . . . N 5 45.005 -122.749 -27.31 0.5 73.71 ? O4B UD1 1351 C 1 
HETATM 30 O O3B UD1 . . . N 5 42.985 -120.538 -25.644 0.5 73.86 ? O3B UD1 1351 C 1 
HETATM 31 C C5B UD1 . . . N 5 44.397 -120.916 -28.817 0.5 75.34 ? C5B UD1 1351 C 1 
HETATM 32 O O5B UD1 . . . N 5 45.76 -121.15 -29.266 0.5 76.27 ? O5B UD1 1351 C 1 
HETATM 33 P PA UD1 . . . N 5 47.003 -120.379 -28.544 0.5 76.65 ? PA UD1 1351 C 1 
HETATM 34 O O1A UD1 . . . N 5 47.364 -121.096 -27.3 0.5 76.15 ? O1A UD1 1351 C 1 
HETATM 35 O O2A UD1 . . . N 5 46.699 -118.919 -28.487 0.5 76.89 ? O2A UD1 1351 C 1 
HETATM 36 O O3A UD1 . . . N 5 48.231 -120.614 -29.533 0.5 76.69 ? O3A UD1 1351 C 1 
HETATM 37 P PB UD1 . . . N 5 49.743 -120.281 -29.069 0.5 76.75 ? PB UD1 1351 C 1 
HETATM 38 O O1B UD1 . . . N 5 50.631 -121.104 -29.928 0.5 76.82 ? O1B UD1 1351 C 1 
HETATM 39 O O2B UD1 . . . N 5 49.845 -120.399 -27.591 0.5 76.41 ? O2B UD1 1351 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           39 
#