data_2IVP # _model_server_result.job_id jKJ9I2hdQ4CaWA9aJNDlFA _model_server_result.datetime_utc '2024-11-23 08:32:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ivp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1327}' # _entry.id 2IVP # _exptl.entry_id 2IVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IVP _cell.length_a 61.688 _cell.length_b 69.914 _cell.length_c 74.306 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 107 A HIS 107 1_555 B FE FE2 . A FE2 1326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc2 A OH TYR 127 A TYR 127 1_555 B FE FE2 . A FE2 1326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 A OD1 ASP 285 A ASP 285 1_555 B FE FE2 . A FE2 1326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc4 B FE FE2 . A FE2 1326 1_555 C O1G ATP . A ATP 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 2IVP _atom_sites.fract_transf_matrix[1][1] 0.016211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013458 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 1326 1326 FE2 FE2 . C 3 ATP A 1 1327 1327 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 -24.537 5.176 -6.866 1 40.32 ? PG ATP 1327 A 1 HETATM 2 O O1G ATP . . . C 3 -25.863 4.512 -7.111 1 40.02 ? O1G ATP 1327 A 1 HETATM 3 O O2G ATP . . . C 3 -23.902 4.791 -5.541 1 40.48 ? O2G ATP 1327 A 1 HETATM 4 O O3G ATP . . . C 3 -23.614 5.091 -8.058 1 40.26 ? O3G ATP 1327 A 1 HETATM 5 P PB ATP . . . C 3 -24.61 7.873 -7.785 1 34.99 ? PB ATP 1327 A 1 HETATM 6 O O1B ATP . . . C 3 -23.118 8.104 -7.753 1 36.38 ? O1B ATP 1327 A 1 HETATM 7 O O2B ATP . . . C 3 -25.288 7.491 -9.072 1 35.34 ? O2B ATP 1327 A 1 HETATM 8 O O3B ATP . . . C 3 -24.904 6.743 -6.673 1 37.82 ? O3B ATP 1327 A 1 HETATM 9 P PA ATP . . . C 3 -26.901 9.529 -7.215 1 33.8 ? PA ATP 1327 A 1 HETATM 10 O O1A ATP . . . C 3 -26.99 10.927 -6.656 1 34.1 ? O1A ATP 1327 A 1 HETATM 11 O O2A ATP . . . C 3 -27.697 8.4 -6.59 1 32.55 ? O2A ATP 1327 A 1 HETATM 12 O O3A ATP . . . C 3 -25.314 9.215 -7.237 1 34.34 ? O3A ATP 1327 A 1 HETATM 13 O O5' ATP . . . C 3 -27.347 9.601 -8.761 1 32.89 ? O5' ATP 1327 A 1 HETATM 14 C C5' ATP . . . C 3 -26.723 10.451 -9.717 1 31.5 ? C5' ATP 1327 A 1 HETATM 15 C C4' ATP . . . C 3 -27.118 9.916 -11.091 1 31.29 ? C4' ATP 1327 A 1 HETATM 16 O O4' ATP . . . C 3 -28.535 10.039 -11.295 1 30.91 ? O4' ATP 1327 A 1 HETATM 17 C C3' ATP . . . C 3 -26.448 10.698 -12.204 1 31.19 ? C3' ATP 1327 A 1 HETATM 18 O O3' ATP . . . C 3 -26.021 9.751 -13.189 1 31.9 ? O3' ATP 1327 A 1 HETATM 19 C C2' ATP . . . C 3 -27.553 11.562 -12.767 1 30.22 ? C2' ATP 1327 A 1 HETATM 20 O O2' ATP . . . C 3 -27.345 11.86 -14.153 1 31.14 ? O2' ATP 1327 A 1 HETATM 21 C C1' ATP . . . C 3 -28.788 10.716 -12.525 1 29.02 ? C1' ATP 1327 A 1 HETATM 22 N N9 ATP . . . C 3 -29.994 11.579 -12.493 1 29.12 ? N9 ATP 1327 A 1 HETATM 23 C C8 ATP . . . C 3 -30.278 12.567 -11.617 1 28.39 ? C8 ATP 1327 A 1 HETATM 24 N N7 ATP . . . C 3 -31.468 13.153 -11.921 1 28.41 ? N7 ATP 1327 A 1 HETATM 25 C C5 ATP . . . C 3 -31.968 12.537 -13.007 1 27.91 ? C5 ATP 1327 A 1 HETATM 26 C C6 ATP . . . C 3 -33.178 12.656 -13.854 1 27.87 ? C6 ATP 1327 A 1 HETATM 27 N N6 ATP . . . C 3 -34.138 13.567 -13.599 1 28.16 ? N6 ATP 1327 A 1 HETATM 28 N N1 ATP . . . C 3 -33.301 11.814 -14.902 1 28.45 ? N1 ATP 1327 A 1 HETATM 29 C C2 ATP . . . C 3 -32.362 10.887 -15.18 1 28.68 ? C2 ATP 1327 A 1 HETATM 30 N N3 ATP . . . C 3 -31.236 10.717 -14.456 1 27.93 ? N3 ATP 1327 A 1 HETATM 31 C C4 ATP . . . C 3 -30.99 11.499 -13.379 1 28.38 ? C4 ATP 1327 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #