data_2IVT
#
_model_server_result.job_id            tly08JkB36OAcQy36HoPSg 
_model_server_result.datetime_utc      '2024-11-22 04:21:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ivt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":3015}' 
#
_entry.id    2IVT 
#
_exptl.entry_id    2IVT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.13 
_cell.angle_gamma         90 
_cell.entry_id            2IVT 
_cell.length_a            72.131 
_cell.length_b            70.848 
_cell.length_c            78.916 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2IVT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_755 -x+2,y,-z -1 0 0 0 1 0 0 0 -1 144.262 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 205 A SER 904 1_555 A N PTR 206 A PTR 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 A C PTR 206 A PTR 905 1_555 A N VAL 207 A VAL 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     2IVT 
_atom_sites.fract_transf_matrix[1][1]    0.013864 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002727 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014115 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012915 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMT A 1 3013 3013 FMT FMT . 
C 2 FMT A 1 3014 3014 FMT FMT . 
D 3 AMP A 1 3015 3015 AMP AMP . 
E 4 HOH A 1 2001 2001 HOH HOH . 
E 4 HOH A 2 2002 2002 HOH HOH . 
E 4 HOH A 3 2003 2003 HOH HOH . 
E 4 HOH A 4 2004 2004 HOH HOH . 
E 4 HOH A 5 2005 2005 HOH HOH . 
E 4 HOH A 6 2006 2006 HOH HOH . 
E 4 HOH A 7 2007 2007 HOH HOH . 
E 4 HOH A 8 2008 2008 HOH HOH . 
E 4 HOH A 9 2009 2009 HOH HOH . 
E 4 HOH A 10 2010 2010 HOH HOH . 
E 4 HOH A 11 2011 2011 HOH HOH . 
E 4 HOH A 12 2012 2012 HOH HOH . 
E 4 HOH A 13 2013 2013 HOH HOH . 
E 4 HOH A 14 2014 2014 HOH HOH . 
E 4 HOH A 15 2015 2015 HOH HOH . 
E 4 HOH A 16 2016 2016 HOH HOH . 
E 4 HOH A 17 2017 2017 HOH HOH . 
E 4 HOH A 18 2018 2018 HOH HOH . 
E 4 HOH A 19 2019 2019 HOH HOH . 
E 4 HOH A 20 2020 2020 HOH HOH . 
E 4 HOH A 21 2021 2021 HOH HOH . 
E 4 HOH A 22 2022 2022 HOH HOH . 
E 4 HOH A 23 2023 2023 HOH HOH . 
E 4 HOH A 24 2024 2024 HOH HOH . 
E 4 HOH A 25 2025 2025 HOH HOH . 
E 4 HOH A 26 2026 2026 HOH HOH . 
E 4 HOH A 27 2027 2027 HOH HOH . 
E 4 HOH A 28 2028 2028 HOH HOH . 
E 4 HOH A 29 2029 2029 HOH HOH . 
E 4 HOH A 30 2030 2030 HOH HOH . 
E 4 HOH A 31 2031 2031 HOH HOH . 
E 4 HOH A 32 2032 2032 HOH HOH . 
E 4 HOH A 33 2033 2033 HOH HOH . 
E 4 HOH A 34 2034 2034 HOH HOH . 
E 4 HOH A 35 2035 2035 HOH HOH . 
E 4 HOH A 36 2036 2036 HOH HOH . 
E 4 HOH A 37 2037 2037 HOH HOH . 
E 4 HOH A 38 2038 2038 HOH HOH . 
E 4 HOH A 39 2039 2039 HOH HOH . 
E 4 HOH A 40 2040 2040 HOH HOH . 
E 4 HOH A 41 2041 2041 HOH HOH . 
E 4 HOH A 42 2042 2042 HOH HOH . 
E 4 HOH A 43 2043 2043 HOH HOH . 
E 4 HOH A 44 2044 2044 HOH HOH . 
E 4 HOH A 45 2045 2045 HOH HOH . 
E 4 HOH A 46 2046 2046 HOH HOH . 
E 4 HOH A 47 2047 2047 HOH HOH . 
E 4 HOH A 48 2048 2048 HOH HOH . 
E 4 HOH A 49 2049 2049 HOH HOH . 
E 4 HOH A 50 2050 2050 HOH HOH . 
E 4 HOH A 51 2051 2051 HOH HOH . 
E 4 HOH A 52 2052 2052 HOH HOH . 
E 4 HOH A 53 2053 2053 HOH HOH . 
E 4 HOH A 54 2054 2054 HOH HOH . 
E 4 HOH A 55 2055 2055 HOH HOH . 
E 4 HOH A 56 2056 2056 HOH HOH . 
E 4 HOH A 57 2057 2057 HOH HOH . 
E 4 HOH A 58 2058 2058 HOH HOH . 
E 4 HOH A 59 2059 2059 HOH HOH . 
E 4 HOH A 60 2060 2060 HOH HOH . 
E 4 HOH A 61 2061 2061 HOH HOH . 
E 4 HOH A 62 2062 2062 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . D 3 64.349 4.051 8.112 1 46.09 ? P AMP 3015 A 1 
HETATM 2 O O1P AMP . . . D 3 64.322 3.943 6.59 1 47.52 ? O1P AMP 3015 A 1 
HETATM 3 O O2P AMP . . . D 3 65.652 3.697 8.837 1 46.33 ? O2P AMP 3015 A 1 
HETATM 4 O O3P AMP . . . D 3 63.161 3.384 8.771 1 46.26 ? O3P AMP 3015 A 1 
HETATM 5 O O5' AMP . . . D 3 64.185 5.66 8.286 1 43.87 ? O5' AMP 3015 A 1 
HETATM 6 C C5' AMP . . . D 3 65.156 6.591 7.78 1 38.05 ? C5' AMP 3015 A 1 
HETATM 7 C C4' AMP . . . D 3 65.117 7.929 8.507 1 35.78 ? C4' AMP 3015 A 1 
HETATM 8 O O4' AMP . . . D 3 63.905 8.678 8.277 1 34 ? O4' AMP 3015 A 1 
HETATM 9 C C3' AMP . . . D 3 65.202 7.786 10.033 1 35.34 ? C3' AMP 3015 A 1 
HETATM 10 O O3' AMP . . . D 3 66.545 7.635 10.513 1 39.44 ? O3' AMP 3015 A 1 
HETATM 11 C C2' AMP . . . D 3 64.535 9.051 10.541 1 32.03 ? C2' AMP 3015 A 1 
HETATM 12 O O2' AMP . . . D 3 65.399 10.165 10.353 1 30.41 ? O2' AMP 3015 A 1 
HETATM 13 C C1' AMP . . . D 3 63.41 9.211 9.533 1 30.3 ? C1' AMP 3015 A 1 
HETATM 14 N N9 AMP . . . D 3 62.179 8.509 10.027 1 25.64 ? N9 AMP 3015 A 1 
HETATM 15 C C8 AMP . . . D 3 61.867 7.203 9.862 1 22.79 ? C8 AMP 3015 A 1 
HETATM 16 N N7 AMP . . . D 3 60.67 6.883 10.41 1 20.5 ? N7 AMP 3015 A 1 
HETATM 17 C C5 AMP . . . D 3 60.192 8.022 10.967 1 20.56 ? C5 AMP 3015 A 1 
HETATM 18 C C6 AMP . . . D 3 58.97 8.432 11.693 1 18.05 ? C6 AMP 3015 A 1 
HETATM 19 N N6 AMP . . . D 3 58.004 7.551 11.996 1 15 ? N6 AMP 3015 A 1 
HETATM 20 N N1 AMP . . . D 3 58.857 9.721 12.08 1 20.3 ? N1 AMP 3015 A 1 
HETATM 21 C C2 AMP . . . D 3 59.794 10.654 11.821 1 19.18 ? C2 AMP 3015 A 1 
HETATM 22 N N3 AMP . . . D 3 60.911 10.351 11.147 1 21.53 ? N3 AMP 3015 A 1 
HETATM 23 C C4 AMP . . . D 3 61.175 9.087 10.708 1 22.29 ? C4 AMP 3015 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#