data_2IVU # _model_server_result.job_id fDJmSdBBtRxWHYAYgVpbsw _model_server_result.datetime_utc '2024-11-24 18:31:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ivu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3015}' # _entry.id 2IVU # _exptl.entry_id 2IVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 475.354 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Vandetanib _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.23 _cell.angle_gamma 90 _cell.entry_id 2IVU _cell.length_a 71.409 _cell.length_b 71.42 _cell.length_c 78.834 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -71.409 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 205 A SER 904 1_555 A N PTR 206 A PTR 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C PTR 206 A PTR 905 1_555 A N VAL 207 A VAL 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C22 H24 Br F N4 O2' _chem_comp.formula_weight 475.354 _chem_comp.id ZD6 _chem_comp.mon_nstd_flag . _chem_comp.name Vandetanib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ZD6474 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAM CAK ZD6 sing 409 n n CAM NBD ZD6 sing 410 n n CAK CBC ZD6 sing 411 n n CAB NBD ZD6 sing 412 n n CBC CAO ZD6 sing 413 n n CBC CAL ZD6 sing 414 n n NBD CAN ZD6 sing 415 n n CAO OAT ZD6 sing 416 n n N3 C2 ZD6 doub 417 n y N3 C4 ZD6 sing 418 n y C2 N1 ZD6 sing 419 n y CAI C4 ZD6 doub 420 n y CAI CAY ZD6 sing 421 n y C4 C5 ZD6 sing 422 n y OAT CAY ZD6 sing 423 n n CAY CAX ZD6 doub 424 n y CAN CAL ZD6 sing 425 n n N1 C6 ZD6 doub 426 n y C5 C6 ZD6 sing 427 n y C5 CAJ ZD6 doub 428 n y C6 NAR ZD6 sing 429 n n CAX CAJ ZD6 sing 430 n y CAX OAS ZD6 sing 431 n n OAS CAA ZD6 sing 432 n n NAR CAW ZD6 sing 433 n n CAF CAW ZD6 doub 434 n y CAF CAE ZD6 sing 435 n y CAW CAV ZD6 sing 436 n y CAE CAU ZD6 doub 437 n y CAV CAH ZD6 doub 438 n y CAV FAC ZD6 sing 439 n n CAU CAH ZD6 sing 440 n y CAU BR ZD6 sing 441 n n CAK H1 ZD6 sing 442 n n CAK H2 ZD6 sing 443 n n CAM H3 ZD6 sing 444 n n CAM H4 ZD6 sing 445 n n CAB H6 ZD6 sing 446 n n CAB H7 ZD6 sing 447 n n CAB H8 ZD6 sing 448 n n CAN H9 ZD6 sing 449 n n CAN H10 ZD6 sing 450 n n CAL H11 ZD6 sing 451 n n CAL H12 ZD6 sing 452 n n CBC H13 ZD6 sing 453 n n CAO H14 ZD6 sing 454 n n CAO H15 ZD6 sing 455 n n CAI H16 ZD6 sing 456 n n CAA H17 ZD6 sing 457 n n CAA H18 ZD6 sing 458 n n CAA H19 ZD6 sing 459 n n CAJ H20 ZD6 sing 460 n n C2 H21 ZD6 sing 461 n n NAR H22 ZD6 sing 462 n n CAF H23 ZD6 sing 463 n n CAE H24 ZD6 sing 464 n n CAH H25 ZD6 sing 465 n n # _atom_sites.entry_id 2IVU _atom_sites.fract_transf_matrix[1][1] 0.014004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00278 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012932 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMT A 1 3013 3013 FMT FMT . C 2 FMT A 1 3014 3014 FMT FMT . D 3 ZD6 A 1 3015 3015 ZD6 ZD6 . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2004 2004 HOH HOH . E 4 HOH A 5 2005 2005 HOH HOH . E 4 HOH A 6 2006 2006 HOH HOH . E 4 HOH A 7 2007 2007 HOH HOH . E 4 HOH A 8 2008 2008 HOH HOH . E 4 HOH A 9 2009 2009 HOH HOH . E 4 HOH A 10 2010 2010 HOH HOH . E 4 HOH A 11 2011 2011 HOH HOH . E 4 HOH A 12 2012 2012 HOH HOH . E 4 HOH A 13 2013 2013 HOH HOH . E 4 HOH A 14 2014 2014 HOH HOH . E 4 HOH A 15 2015 2015 HOH HOH . E 4 HOH A 16 2016 2016 HOH HOH . E 4 HOH A 17 2017 2017 HOH HOH . E 4 HOH A 18 2018 2018 HOH HOH . E 4 HOH A 19 2019 2019 HOH HOH . E 4 HOH A 20 2020 2020 HOH HOH . E 4 HOH A 21 2021 2021 HOH HOH . E 4 HOH A 22 2022 2022 HOH HOH . E 4 HOH A 23 2023 2023 HOH HOH . E 4 HOH A 24 2024 2024 HOH HOH . E 4 HOH A 25 2025 2025 HOH HOH . E 4 HOH A 26 2026 2026 HOH HOH . E 4 HOH A 27 2027 2027 HOH HOH . E 4 HOH A 28 2028 2028 HOH HOH . E 4 HOH A 29 2029 2029 HOH HOH . E 4 HOH A 30 2030 2030 HOH HOH . E 4 HOH A 31 2031 2031 HOH HOH . E 4 HOH A 32 2032 2032 HOH HOH . E 4 HOH A 33 2033 2033 HOH HOH . E 4 HOH A 34 2034 2034 HOH HOH . E 4 HOH A 35 2035 2035 HOH HOH . E 4 HOH A 36 2036 2036 HOH HOH . E 4 HOH A 37 2037 2037 HOH HOH . E 4 HOH A 38 2038 2038 HOH HOH . E 4 HOH A 39 2039 2039 HOH HOH . E 4 HOH A 40 2040 2040 HOH HOH . E 4 HOH A 41 2041 2041 HOH HOH . E 4 HOH A 42 2042 2042 HOH HOH . E 4 HOH A 43 2043 2043 HOH HOH . E 4 HOH A 44 2044 2044 HOH HOH . E 4 HOH A 45 2045 2045 HOH HOH . E 4 HOH A 46 2046 2046 HOH HOH . E 4 HOH A 47 2047 2047 HOH HOH . E 4 HOH A 48 2048 2048 HOH HOH . E 4 HOH A 49 2049 2049 HOH HOH . E 4 HOH A 50 2050 2050 HOH HOH . E 4 HOH A 51 2051 2051 HOH HOH . E 4 HOH A 52 2052 2052 HOH HOH . E 4 HOH A 53 2053 2053 HOH HOH . E 4 HOH A 54 2054 2054 HOH HOH . E 4 HOH A 55 2055 2055 HOH HOH . E 4 HOH A 56 2056 2056 HOH HOH . E 4 HOH A 57 2057 2057 HOH HOH . E 4 HOH A 58 2058 2058 HOH HOH . E 4 HOH A 59 2059 2059 HOH HOH . E 4 HOH A 60 2060 2060 HOH HOH . E 4 HOH A 61 2061 2061 HOH HOH . E 4 HOH A 62 2062 2062 HOH HOH . E 4 HOH A 63 2063 2063 HOH HOH . E 4 HOH A 64 2064 2064 HOH HOH . E 4 HOH A 65 2065 2065 HOH HOH . E 4 HOH A 66 2066 2066 HOH HOH . E 4 HOH A 67 2067 2067 HOH HOH . E 4 HOH A 68 2068 2068 HOH HOH . E 4 HOH A 69 2069 2069 HOH HOH . E 4 HOH A 70 2070 2070 HOH HOH . E 4 HOH A 71 2071 2071 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAK ZD6 . . . D 3 -24.692 15.96 -13.554 1 39.5 ? CAK ZD6 3015 A 1 HETATM 2 C CAM ZD6 . . . D 3 -25.666 17.109 -13.83 1 42.92 ? CAM ZD6 3015 A 1 HETATM 3 N NBD ZD6 . . . D 3 -26.206 17.735 -12.596 1 44.82 ? NBD ZD6 3015 A 1 HETATM 4 C CAB ZD6 . . . D 3 -27.481 18.348 -13.023 1 45.53 ? CAB ZD6 3015 A 1 HETATM 5 C CAN ZD6 . . . D 3 -26.55 16.815 -11.466 1 44.14 ? CAN ZD6 3015 A 1 HETATM 6 C CAL ZD6 . . . D 3 -25.548 15.672 -11.281 1 40.98 ? CAL ZD6 3015 A 1 HETATM 7 C CBC ZD6 . . . D 3 -25.312 14.949 -12.608 1 37.94 ? CBC ZD6 3015 A 1 HETATM 8 C CAO ZD6 . . . D 3 -24.388 13.752 -12.429 1 34.1 ? CAO ZD6 3015 A 1 HETATM 9 O OAT ZD6 . . . D 3 -25.247 12.767 -11.887 1 28.48 ? OAT ZD6 3015 A 1 HETATM 10 C CAY ZD6 . . . D 3 -24.722 11.528 -11.655 1 27.56 ? CAY ZD6 3015 A 1 HETATM 11 C CAI ZD6 . . . D 3 -23.5 11.113 -12.155 1 26.69 ? CAI ZD6 3015 A 1 HETATM 12 C CAX ZD6 . . . D 3 -25.484 10.669 -10.884 1 27.38 ? CAX ZD6 3015 A 1 HETATM 13 O OAS ZD6 . . . D 3 -26.694 11.171 -10.429 1 27.35 ? OAS ZD6 3015 A 1 HETATM 14 C CAA ZD6 . . . D 3 -27.458 10.401 -9.473 1 26.97 ? CAA ZD6 3015 A 1 HETATM 15 C CAJ ZD6 . . . D 3 -25.012 9.377 -10.625 1 26.81 ? CAJ ZD6 3015 A 1 HETATM 16 C C5 ZD6 . . . D 3 -23.78 8.96 -11.136 1 27.31 ? C5 ZD6 3015 A 1 HETATM 17 C C4 ZD6 . . . D 3 -23.023 9.84 -11.894 1 26.48 ? C4 ZD6 3015 A 1 HETATM 18 N N3 ZD6 . . . D 3 -21.833 9.434 -12.401 1 27.11 ? N3 ZD6 3015 A 1 HETATM 19 C C2 ZD6 . . . D 3 -21.373 8.209 -12.166 1 26.78 ? C2 ZD6 3015 A 1 HETATM 20 N N1 ZD6 . . . D 3 -22.055 7.351 -11.416 1 25.67 ? N1 ZD6 3015 A 1 HETATM 21 C C6 ZD6 . . . D 3 -23.252 7.669 -10.893 1 27.45 ? C6 ZD6 3015 A 1 HETATM 22 N NAR ZD6 . . . D 3 -23.968 6.708 -10.104 1 28.41 ? NAR ZD6 3015 A 1 HETATM 23 C CAW ZD6 . . . D 3 -23.373 5.488 -9.711 1 30.7 ? CAW ZD6 3015 A 1 HETATM 24 C CAF ZD6 . . . D 3 -23.932 4.278 -10.088 1 30.33 ? CAF ZD6 3015 A 1 HETATM 25 C CAE ZD6 . . . D 3 -23.343 3.092 -9.663 1 31.71 ? CAE ZD6 3015 A 1 HETATM 26 C CAU ZD6 . . . D 3 -22.195 3.152 -8.87 1 32.99 ? CAU ZD6 3015 A 1 HETATM 27 BR BR ZD6 . . . D 3 -21.233 1.639 -8.212 1 41.09 ? BR ZD6 3015 A 1 HETATM 28 C CAH ZD6 . . . D 3 -21.659 4.355 -8.5 1 31.01 ? CAH ZD6 3015 A 1 HETATM 29 C CAV ZD6 . . . D 3 -22.238 5.504 -8.915 1 32 ? CAV ZD6 3015 A 1 HETATM 30 F FAC ZD6 . . . D 3 -21.644 6.622 -8.49 1 33.9 ? FAC ZD6 3015 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #