data_2IWD # _model_server_result.job_id vaRoBAJko8muEjkgXWCVLw _model_server_result.datetime_utc '2025-07-13 15:12:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2iwd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 2IWD # _exptl.entry_id 2IWD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.452 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-5,5-dimethyl-2-[(1R)-1-{[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonyl]amino}-2-oxoethyl]-1,3-thiazolidine-4-carb oxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IWD _cell.length_a 57.97 _cell.length_b 57.97 _cell.length_c 147.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IWD _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 52 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 391 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C _struct_conn.ptnr2_label_comp_id 1S6 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 1S6 _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.446 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H21 N3 O5 S' _chem_comp.formula_weight 403.452 _chem_comp.id 1S6 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-5,5-dimethyl-2-[(1R)-1-{[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonyl]amino}-2-oxoethyl]-1,3-thiazolidine-4-carb oxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Oxacillin, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAV 1S6 sing 1 n n OAQ CAV 1S6 sing 2 n y OAQ NAN 1S6 sing 3 n y CAV CAY 1S6 doub 4 n y NAN CAX 1S6 doub 5 n y OAF CAU 1S6 doub 6 n n CAY CAU 1S6 sing 7 n n CAY CAX 1S6 sing 8 n y CAU N 1S6 sing 9 n n CAX CAW 1S6 sing 10 n n CAM CAW 1S6 doub 11 n y CAM CAK 1S6 sing 12 n y N CA 1S6 sing 13 n n CAW CAL 1S6 sing 14 n y CA C 1S6 sing 15 n n CA CB 1S6 sing 16 n n CAK CAI 1S6 doub 17 n y C OXT 1S6 doub 18 n n CAL CAJ 1S6 doub 19 n y CB SAR 1S6 sing 20 n n CB NAP 1S6 sing 21 n n SAR CBC 1S6 sing 22 n n CAI CAJ 1S6 sing 23 n y NAP CBB 1S6 sing 24 n n CBC CBB 1S6 sing 25 n n CBC CAB 1S6 sing 26 n n CBC CAC 1S6 sing 27 n n CBB CAT 1S6 sing 28 n n CAT OAE 1S6 doub 29 n n CAT OAH 1S6 sing 30 n n C H1 1S6 sing 31 n n N H2 1S6 sing 32 n n CA H3 1S6 sing 33 n n CB H4 1S6 sing 34 n n CAA H5 1S6 sing 35 n n CAA H6 1S6 sing 36 n n CAA H7 1S6 sing 37 n n CAB H8 1S6 sing 38 n n CAB H9 1S6 sing 39 n n CAB H10 1S6 sing 40 n n CAC H11 1S6 sing 41 n n CAC H12 1S6 sing 42 n n CAC H13 1S6 sing 43 n n OAH H14 1S6 sing 44 n n CAI H15 1S6 sing 45 n n CAJ H16 1S6 sing 46 n n CAK H17 1S6 sing 47 n n CAL H18 1S6 sing 48 n n CAM H19 1S6 sing 49 n n NAP H20 1S6 sing 50 n n CBB H22 1S6 sing 51 n n # _atom_sites.entry_id 2IWD _atom_sites.fract_transf_matrix[1][1] 0.01725 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006784 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1S6 A 1 601 391 1S6 SOY . C 3 HOH A 1 701 2016 HOH HOH . C 3 HOH A 2 702 2019 HOH HOH . C 3 HOH A 3 703 2012 HOH HOH . C 3 HOH A 4 704 2023 HOH HOH . C 3 HOH A 5 705 2026 HOH HOH . C 3 HOH A 6 706 2004 HOH HOH . C 3 HOH A 7 707 2013 HOH HOH . C 3 HOH A 8 708 2024 HOH HOH . C 3 HOH A 9 709 2018 HOH HOH . C 3 HOH A 10 710 2006 HOH HOH . C 3 HOH A 11 711 2002 HOH HOH . C 3 HOH A 12 712 2022 HOH HOH . C 3 HOH A 13 713 2015 HOH HOH . C 3 HOH A 14 714 2008 HOH HOH . C 3 HOH A 15 715 2007 HOH HOH . C 3 HOH A 16 716 2021 HOH HOH . C 3 HOH A 17 717 2020 HOH HOH . C 3 HOH A 18 718 2003 HOH HOH . C 3 HOH A 19 719 2011 HOH HOH . C 3 HOH A 20 720 2009 HOH HOH . C 3 HOH A 21 721 2025 HOH HOH . C 3 HOH A 22 722 2005 HOH HOH . C 3 HOH A 23 723 2017 HOH HOH . C 3 HOH A 24 724 2001 HOH HOH . C 3 HOH A 25 725 2010 HOH HOH . C 3 HOH A 26 726 2014 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 1S6 . . . B 2 21.923 10.489 80.065 1 46.12 ? C 1S6 601 A 1 HETATM 2 N N 1S6 . . . B 2 20.828 12.317 79.087 1 50.95 ? N 1S6 601 A 1 HETATM 3 C CA 1S6 . . . B 2 21.099 10.9 78.89 1 47.44 ? CA 1S6 601 A 1 HETATM 4 C CB 1S6 . . . B 2 21.92 10.556 77.634 1 46.16 ? CB 1S6 601 A 1 HETATM 5 C CAA 1S6 . . . B 2 18.272 14.012 81.65 1 58.25 ? CAA 1S6 601 A 1 HETATM 6 C CAB 1S6 . . . B 2 24.006 13.484 76.058 1 45.33 ? CAB 1S6 601 A 1 HETATM 7 C CAC 1S6 . . . B 2 24.263 11.152 75.218 1 41.63 ? CAC 1S6 601 A 1 HETATM 8 O OAE 1S6 . . . B 2 26.115 10.38 77.87 1 46.38 ? OAE 1S6 601 A 1 HETATM 9 O OAF 1S6 . . . B 2 18.676 12.214 78.464 1 57.52 ? OAF 1S6 601 A 1 HETATM 10 O OAH 1S6 . . . B 2 26.19 12.555 78.256 1 46.17 ? OAH 1S6 601 A 1 HETATM 11 C CAI 1S6 . . . B 2 21.714 16.02 74.761 1 57.77 ? CAI 1S6 601 A 1 HETATM 12 C CAJ 1S6 . . . B 2 20.836 14.964 74.952 1 58.14 ? CAJ 1S6 601 A 1 HETATM 13 C CAK 1S6 . . . B 2 21.948 16.888 75.809 1 58.1 ? CAK 1S6 601 A 1 HETATM 14 C CAL 1S6 . . . B 2 20.201 14.76 76.176 1 58.11 ? CAL 1S6 601 A 1 HETATM 15 C CAM 1S6 . . . B 2 21.31 16.684 77.033 1 58.27 ? CAM 1S6 601 A 1 HETATM 16 N NAN 1S6 . . . B 2 19.459 16.556 79.236 1 58.21 ? NAN 1S6 601 A 1 HETATM 17 N NAP 1S6 . . . B 2 23.312 10.433 78.012 1 43.84 ? NAP 1S6 601 A 1 HETATM 18 O OAQ 1S6 . . . B 2 18.858 16.078 80.447 1 58.16 ? OAQ 1S6 601 A 1 HETATM 19 S SAR 1S6 . . . B 2 21.863 11.778 76.345 1 45.14 ? SAR 1S6 601 A 1 HETATM 20 C CAT 1S6 . . . B 2 25.565 11.507 77.958 1 46.15 ? CAT 1S6 601 A 1 HETATM 21 C CAU 1S6 . . . B 2 19.629 12.864 78.866 1 56.61 ? CAU 1S6 601 A 1 HETATM 22 C CAV 1S6 . . . B 2 18.85 14.726 80.456 1 58.12 ? CAV 1S6 601 A 1 HETATM 23 C CAW 1S6 . . . B 2 20.436 15.626 77.228 1 57.81 ? CAW 1S6 601 A 1 HETATM 24 C CAX 1S6 . . . B 2 19.829 15.482 78.473 1 58.06 ? CAX 1S6 601 A 1 HETATM 25 C CAY 1S6 . . . B 2 19.465 14.318 79.179 1 57.3 ? CAY 1S6 601 A 1 HETATM 26 C CBB 1S6 . . . B 2 24.077 11.624 77.725 1 44.46 ? CBB 1S6 601 A 1 HETATM 27 C CBC 1S6 . . . B 2 23.633 12.019 76.313 1 44.98 ? CBC 1S6 601 A 1 HETATM 28 O OXT 1S6 . . . B 2 22.472 11.313 80.792 1 48.2 ? OXT 1S6 601 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #