data_2IYI
#
_model_server_result.job_id            rOH3MUEdNpMgCaKhC2t6aA 
_model_server_result.datetime_utc      '2025-03-01 13:18:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2iyi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1122}' 
#
_entry.id    2IYI 
#
_exptl.entry_id    2IYI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2IYI 
_cell.length_a            126.4 
_cell.length_b            126.4 
_cell.length_c            64.9 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2IYI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 19 A CYS 19 1_555 D S1 DTU . A DTU 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
covale ? covale2 B SG CYS 19 B CYS 19 1_555 F S4 DTT . B DTT 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 117 n n 
N1 C10 FMN doub 118 n n 
C2 O2 FMN doub 119 n n 
C2 N3 FMN sing 120 n n 
N3 C4 FMN sing 121 n n 
N3 HN3 FMN sing 122 n n 
C4 O4 FMN doub 123 n n 
C4 C4A FMN sing 124 n n 
C4A N5 FMN doub 125 n n 
C4A C10 FMN sing 126 n n 
N5 C5A FMN sing 127 n n 
C5A C6 FMN doub 128 n y 
C5A C9A FMN sing 129 n y 
C6 C7 FMN sing 130 n y 
C6 H6 FMN sing 131 n n 
C7 C7M FMN sing 132 n n 
C7 C8 FMN doub 133 n y 
C7M HM71 FMN sing 134 n n 
C7M HM72 FMN sing 135 n n 
C7M HM73 FMN sing 136 n n 
C8 C8M FMN sing 137 n n 
C8 C9 FMN sing 138 n y 
C8M HM81 FMN sing 139 n n 
C8M HM82 FMN sing 140 n n 
C8M HM83 FMN sing 141 n n 
C9 C9A FMN doub 142 n y 
C9 H9 FMN sing 143 n n 
C9A N10 FMN sing 144 n n 
N10 C10 FMN sing 145 n n 
N10 C1' FMN sing 146 n n 
C1' C2' FMN sing 147 n n 
C1' "H1'1" FMN sing 148 n n 
C1' "H1'2" FMN sing 149 n n 
C2' O2' FMN sing 150 n n 
C2' C3' FMN sing 151 n n 
C2' H2' FMN sing 152 n n 
O2' HO2' FMN sing 153 n n 
C3' O3' FMN sing 154 n n 
C3' C4' FMN sing 155 n n 
C3' H3' FMN sing 156 n n 
O3' HO3' FMN sing 157 n n 
C4' O4' FMN sing 158 n n 
C4' C5' FMN sing 159 n n 
C4' H4' FMN sing 160 n n 
O4' HO4' FMN sing 161 n n 
C5' O5' FMN sing 162 n n 
C5' "H5'1" FMN sing 163 n n 
C5' "H5'2" FMN sing 164 n n 
O5' P FMN sing 165 n n 
P O1P FMN doub 166 n n 
P O2P FMN sing 167 n n 
P O3P FMN sing 168 n n 
O2P HOP2 FMN sing 169 n n 
O3P HOP3 FMN sing 170 n n 
#
_atom_sites.entry_id                     2IYI 
_atom_sites.fract_transf_matrix[1][1]    0.007911 
_atom_sites.fract_transf_matrix[1][2]    0.004568 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009135 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015408 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMN A 1 1122 1122 FMN FMN . 
D 3 DTU A 1 1123 1123 DTU DTU . 
E 2 FMN B 1 1121 1121 FMN FMN . 
F 4 DTT B 1 1122 1122 DTT DTT . 
G 5 HOH A 1 2001 2001 HOH HOH . 
G 5 HOH A 2 2002 2002 HOH HOH . 
G 5 HOH A 3 2003 2003 HOH HOH . 
G 5 HOH A 4 2004 2004 HOH HOH . 
G 5 HOH A 5 2005 2005 HOH HOH . 
G 5 HOH A 6 2006 2006 HOH HOH . 
G 5 HOH A 7 2007 2007 HOH HOH . 
G 5 HOH A 8 2008 2008 HOH HOH . 
G 5 HOH A 9 2009 2009 HOH HOH . 
G 5 HOH A 10 2010 2010 HOH HOH . 
G 5 HOH A 11 2011 2011 HOH HOH . 
G 5 HOH A 12 2012 2012 HOH HOH . 
G 5 HOH A 13 2013 2013 HOH HOH . 
G 5 HOH A 14 2014 2014 HOH HOH . 
G 5 HOH A 15 2015 2015 HOH HOH . 
G 5 HOH A 16 2016 2016 HOH HOH . 
G 5 HOH A 17 2017 2017 HOH HOH . 
G 5 HOH A 18 2018 2018 HOH HOH . 
G 5 HOH A 19 2019 2019 HOH HOH . 
G 5 HOH A 20 2020 2020 HOH HOH . 
H 5 HOH B 1 2001 2001 HOH HOH . 
H 5 HOH B 2 2002 2002 HOH HOH . 
H 5 HOH B 3 2003 2003 HOH HOH . 
H 5 HOH B 4 2004 2004 HOH HOH . 
H 5 HOH B 5 2005 2005 HOH HOH . 
H 5 HOH B 6 2006 2006 HOH HOH . 
H 5 HOH B 7 2007 2007 HOH HOH . 
H 5 HOH B 8 2008 2008 HOH HOH . 
H 5 HOH B 9 2009 2009 HOH HOH . 
H 5 HOH B 10 2010 2010 HOH HOH . 
H 5 HOH B 11 2011 2011 HOH HOH . 
H 5 HOH B 12 2012 2012 HOH HOH . 
H 5 HOH B 13 2013 2013 HOH HOH . 
H 5 HOH B 14 2014 2014 HOH HOH . 
H 5 HOH B 15 2015 2015 HOH HOH . 
H 5 HOH B 16 2016 2016 HOH HOH . 
H 5 HOH B 17 2017 2017 HOH HOH . 
H 5 HOH B 18 2018 2018 HOH HOH . 
H 5 HOH B 19 2019 2019 HOH HOH . 
H 5 HOH B 20 2020 2020 HOH HOH . 
H 5 HOH B 21 2021 2021 HOH HOH . 
H 5 HOH B 22 2022 2022 HOH HOH . 
H 5 HOH B 23 2023 2023 HOH HOH . 
H 5 HOH B 24 2024 2024 HOH HOH . 
H 5 HOH B 25 2025 2025 HOH HOH . 
H 5 HOH B 26 2026 2026 HOH HOH . 
H 5 HOH B 27 2027 2027 HOH HOH . 
H 5 HOH B 28 2028 2028 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . C 2 0.192 33.072 -1.682 1 48.97 ? N1 FMN 1122 A 1 
HETATM 2 C C2 FMN . . . C 2 -0.299 34.203 -2.288 1 49.13 ? C2 FMN 1122 A 1 
HETATM 3 O O2 FMN . . . C 2 -1.441 34.182 -2.726 1 49.34 ? O2 FMN 1122 A 1 
HETATM 4 N N3 FMN . . . C 2 0.489 35.336 -2.386 1 49.38 ? N3 FMN 1122 A 1 
HETATM 5 C C4 FMN . . . C 2 1.785 35.317 -1.877 1 49.33 ? C4 FMN 1122 A 1 
HETATM 6 O O4 FMN . . . C 2 2.404 36.375 -1.783 1 50.1 ? O4 FMN 1122 A 1 
HETATM 7 C C4A FMN . . . C 2 2.285 34.166 -1.265 1 49.08 ? C4A FMN 1122 A 1 
HETATM 8 N N5 FMN . . . C 2 3.568 34.138 -0.75 1 48.91 ? N5 FMN 1122 A 1 
HETATM 9 C C5A FMN . . . C 2 4.038 32.987 -0.145 1 48.99 ? C5A FMN 1122 A 1 
HETATM 10 C C6 FMN . . . C 2 5.333 32.959 0.369 1 48.78 ? C6 FMN 1122 A 1 
HETATM 11 C C7 FMN . . . C 2 5.823 31.81 0.991 1 49.08 ? C7 FMN 1122 A 1 
HETATM 12 C C7M FMN . . . C 2 7.228 31.773 1.523 1 47.9 ? C7M FMN 1122 A 1 
HETATM 13 C C8 FMN . . . C 2 5.01 30.676 1.087 1 49.22 ? C8 FMN 1122 A 1 
HETATM 14 C C8M FMN . . . C 2 5.417 29.499 1.932 1 48.41 ? C8M FMN 1122 A 1 
HETATM 15 C C9 FMN . . . C 2 3.715 30.71 0.565 1 49.36 ? C9 FMN 1122 A 1 
HETATM 16 C C9A FMN . . . C 2 3.215 31.856 -0.053 1 49.36 ? C9A FMN 1122 A 1 
HETATM 17 N N10 FMN . . . C 2 1.925 31.877 -0.572 1 50.01 ? N10 FMN 1122 A 1 
HETATM 18 C C10 FMN . . . C 2 1.471 33.037 -1.17 1 49.31 ? C10 FMN 1122 A 1 
HETATM 19 C C1' FMN . . . C 2 1.004 30.682 -0.518 1 54.3 ? C1' FMN 1122 A 1 
HETATM 20 C C2' FMN . . . C 2 0.031 30.895 0.643 1 59.79 ? C2' FMN 1122 A 1 
HETATM 21 O O2' FMN . . . C 2 0.704 30.547 1.829 1 58.34 ? O2' FMN 1122 A 1 
HETATM 22 C C3' FMN . . . C 2 -1.287 30.113 0.616 1 64.62 ? C3' FMN 1122 A 1 
HETATM 23 O O3' FMN . . . C 2 -0.977 28.745 0.658 1 66.31 ? O3' FMN 1122 A 1 
HETATM 24 C C4' FMN . . . C 2 -2.227 30.3 -0.578 1 69.64 ? C4' FMN 1122 A 1 
HETATM 25 O O4' FMN . . . C 2 -2.442 31.637 -0.991 1 70.94 ? O4' FMN 1122 A 1 
HETATM 26 C C5' FMN . . . C 2 -3.572 29.668 -0.245 1 74.3 ? C5' FMN 1122 A 1 
HETATM 27 O O5' FMN . . . C 2 -3.467 28.258 -0.323 1 80.97 ? O5' FMN 1122 A 1 
HETATM 28 P P FMN . . . C 2 -2.988 27.457 -1.67 1 85.35 ? P FMN 1122 A 1 
HETATM 29 O O1P FMN . . . C 2 -3.561 26.046 -1.649 1 85.83 ? O1P FMN 1122 A 1 
HETATM 30 O O2P FMN . . . C 2 -3.565 28.155 -2.899 1 86.14 ? O2P FMN 1122 A 1 
HETATM 31 O O3P FMN . . . C 2 -1.467 27.344 -1.76 1 83.55 ? O3P FMN 1122 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#