data_2IZC # _model_server_result.job_id 7xxMFxskkD40wHge_ekpGQ _model_server_result.datetime_utc '2024-11-16 22:26:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2izc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":504}' # _entry.id 2IZC # _exptl.entry_id 2IZC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IZC _cell.length_a 94.85 _cell.length_b 105.63 _cell.length_c 48.14 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IZC _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PQS octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1,2 A,B,C,D,E,F,G,H,I 2 1,3,4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 94.85 0 0 4 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 94.85 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C NA NA . B NA 504 1_555 H O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc2 I O HOH . D HOH 501 1_555 G NA NA . D NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2IZC _atom_sites.fract_transf_matrix[1][1] 0.010543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA B 1 504 504 NA NA . D 3 CL B 1 509 509 CL CL . E 3 CL D 1 503 503 CL CL . F 3 CL D 1 505 505 CL CL . G 2 NA D 1 508 508 NA NA . H 4 HOH B 1 491 491 HOH HOH . H 4 HOH B 2 506 506 HOH HOH . H 4 HOH B 3 507 507 HOH HOH . H 4 HOH B 4 605 605 HOH HOH . H 4 HOH B 5 606 606 HOH HOH . H 4 HOH B 6 607 607 HOH HOH . H 4 HOH B 7 609 609 HOH HOH . H 4 HOH B 8 613 613 HOH HOH . H 4 HOH B 9 617 617 HOH HOH . H 4 HOH B 10 618 618 HOH HOH . H 4 HOH B 11 619 619 HOH HOH . H 4 HOH B 12 620 620 HOH HOH . H 4 HOH B 13 621 621 HOH HOH . H 4 HOH B 14 628 628 HOH HOH . H 4 HOH B 15 629 629 HOH HOH . H 4 HOH B 16 637 637 HOH HOH . H 4 HOH B 17 639 639 HOH HOH . H 4 HOH B 18 643 643 HOH HOH . H 4 HOH B 19 646 646 HOH HOH . H 4 HOH B 20 649 649 HOH HOH . H 4 HOH B 21 652 652 HOH HOH . H 4 HOH B 22 653 653 HOH HOH . H 4 HOH B 23 660 660 HOH HOH . H 4 HOH B 24 662 662 HOH HOH . H 4 HOH B 25 664 664 HOH HOH . H 4 HOH B 26 669 669 HOH HOH . H 4 HOH B 27 680 680 HOH HOH . H 4 HOH B 28 728 728 HOH HOH . H 4 HOH B 29 803 803 HOH HOH . H 4 HOH B 30 852 852 HOH HOH . H 4 HOH B 31 867 867 HOH HOH . H 4 HOH B 32 966 966 HOH HOH . H 4 HOH B 33 988 988 HOH HOH . H 4 HOH B 34 996 996 HOH HOH . H 4 HOH B 35 1015 1015 HOH HOH . H 4 HOH B 36 1082 1082 HOH HOH . H 4 HOH B 37 1145 1145 HOH HOH . H 4 HOH B 38 1255 1255 HOH HOH . H 4 HOH B 39 1369 1369 HOH HOH . H 4 HOH B 40 1372 1372 HOH HOH . H 4 HOH B 41 1374 1374 HOH HOH . H 4 HOH B 42 1375 1375 HOH HOH . H 4 HOH B 43 1378 1378 HOH HOH . H 4 HOH B 44 1384 1384 HOH HOH . H 4 HOH B 45 1403 1403 HOH HOH . H 4 HOH B 46 1409 1409 HOH HOH . H 4 HOH B 47 1411 1411 HOH HOH . H 4 HOH B 48 1416 1416 HOH HOH . H 4 HOH B 49 1428 1428 HOH HOH . H 4 HOH B 50 1436 1436 HOH HOH . H 4 HOH B 51 1460 1460 HOH HOH . H 4 HOH B 52 1461 1461 HOH HOH . H 4 HOH B 53 1495 1495 HOH HOH . I 4 HOH D 1 492 492 HOH HOH . I 4 HOH D 2 493 493 HOH HOH . I 4 HOH D 3 495 495 HOH HOH . I 4 HOH D 4 497 497 HOH HOH . I 4 HOH D 5 501 501 HOH HOH . I 4 HOH D 6 593 593 HOH HOH . I 4 HOH D 7 602 602 HOH HOH . I 4 HOH D 8 610 610 HOH HOH . I 4 HOH D 9 612 612 HOH HOH . I 4 HOH D 10 616 616 HOH HOH . I 4 HOH D 11 622 622 HOH HOH . I 4 HOH D 12 624 624 HOH HOH . I 4 HOH D 13 625 625 HOH HOH . I 4 HOH D 14 626 626 HOH HOH . I 4 HOH D 15 635 635 HOH HOH . I 4 HOH D 16 636 636 HOH HOH . I 4 HOH D 17 641 641 HOH HOH . I 4 HOH D 18 642 642 HOH HOH . I 4 HOH D 19 655 655 HOH HOH . I 4 HOH D 20 656 656 HOH HOH . I 4 HOH D 21 663 663 HOH HOH . I 4 HOH D 22 666 666 HOH HOH . I 4 HOH D 23 668 668 HOH HOH . I 4 HOH D 24 670 670 HOH HOH . I 4 HOH D 25 671 671 HOH HOH . I 4 HOH D 26 677 677 HOH HOH . I 4 HOH D 27 679 679 HOH HOH . I 4 HOH D 28 688 688 HOH HOH . I 4 HOH D 29 689 689 HOH HOH . I 4 HOH D 30 697 697 HOH HOH . I 4 HOH D 31 698 698 HOH HOH . I 4 HOH D 32 734 734 HOH HOH . I 4 HOH D 33 742 742 HOH HOH . I 4 HOH D 34 802 802 HOH HOH . I 4 HOH D 35 830 830 HOH HOH . I 4 HOH D 36 933 933 HOH HOH . I 4 HOH D 37 951 951 HOH HOH . I 4 HOH D 38 952 952 HOH HOH . I 4 HOH D 39 968 968 HOH HOH . I 4 HOH D 40 1076 1076 HOH HOH . I 4 HOH D 41 1090 1090 HOH HOH . I 4 HOH D 42 1151 1151 HOH HOH . I 4 HOH D 43 1174 1174 HOH HOH . I 4 HOH D 44 1236 1236 HOH HOH . I 4 HOH D 45 1262 1262 HOH HOH . I 4 HOH D 46 1322 1322 HOH HOH . I 4 HOH D 47 1370 1370 HOH HOH . I 4 HOH D 48 1371 1371 HOH HOH . I 4 HOH D 49 1373 1373 HOH HOH . I 4 HOH D 50 1379 1379 HOH HOH . I 4 HOH D 51 1380 1380 HOH HOH . I 4 HOH D 52 1392 1392 HOH HOH . I 4 HOH D 53 1394 1394 HOH HOH . I 4 HOH D 54 1395 1395 HOH HOH . I 4 HOH D 55 1397 1397 HOH HOH . I 4 HOH D 56 1400 1400 HOH HOH . I 4 HOH D 57 1402 1402 HOH HOH . I 4 HOH D 58 1404 1404 HOH HOH . I 4 HOH D 59 1414 1414 HOH HOH . I 4 HOH D 60 1424 1424 HOH HOH . I 4 HOH D 61 1451 1451 HOH HOH . I 4 HOH D 62 1457 1457 HOH HOH . I 4 HOH D 63 1465 1465 HOH HOH . I 4 HOH D 64 1474 1474 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 33.408 _atom_site.Cartn_y 10.356 _atom_site.Cartn_z -4.533 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 504 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #