data_2IZD # _model_server_result.job_id G8A5UeWVeAFfXTTQxYVW_Q _model_server_result.datetime_utc '2024-11-13 13:29:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2izd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":463}' # _entry.id 2IZD # _exptl.entry_id 2IZD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IZD _cell.length_a 94.88 _cell.length_b 105.34 _cell.length_c 47.4 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PQS octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1,2 A,B,C,D,E,F,G,H,I 2 1,3,4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 94.88 0 0 4 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 94.88 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2IZD _atom_sites.fract_transf_matrix[1][1] 0.01054 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 B 1 464 464 SO4 SO4 . D 3 CL B 1 465 465 CL CL . E 4 IOD D 1 463 463 IOD IOD . F 5 NH4 D 1 466 466 NH4 NH4 . G 3 CL D 1 467 467 CL CL . H 6 HOH B 1 468 468 HOH HOH . H 6 HOH B 2 474 474 HOH HOH . H 6 HOH B 3 488 488 HOH HOH . H 6 HOH B 4 490 490 HOH HOH . H 6 HOH B 5 491 491 HOH HOH . H 6 HOH B 6 504 504 HOH HOH . H 6 HOH B 7 506 506 HOH HOH . H 6 HOH B 8 507 507 HOH HOH . H 6 HOH B 9 605 605 HOH HOH . H 6 HOH B 10 606 606 HOH HOH . H 6 HOH B 11 607 607 HOH HOH . H 6 HOH B 12 609 609 HOH HOH . H 6 HOH B 13 613 613 HOH HOH . H 6 HOH B 14 617 617 HOH HOH . H 6 HOH B 15 618 618 HOH HOH . H 6 HOH B 16 619 619 HOH HOH . H 6 HOH B 17 620 620 HOH HOH . H 6 HOH B 18 621 621 HOH HOH . H 6 HOH B 19 628 628 HOH HOH . H 6 HOH B 20 629 629 HOH HOH . H 6 HOH B 21 637 637 HOH HOH . H 6 HOH B 22 639 639 HOH HOH . H 6 HOH B 23 643 643 HOH HOH . H 6 HOH B 24 649 649 HOH HOH . H 6 HOH B 25 652 652 HOH HOH . H 6 HOH B 26 653 653 HOH HOH . H 6 HOH B 27 660 660 HOH HOH . H 6 HOH B 28 664 664 HOH HOH . H 6 HOH B 29 669 669 HOH HOH . H 6 HOH B 30 671 671 HOH HOH . H 6 HOH B 31 680 680 HOH HOH . H 6 HOH B 32 803 803 HOH HOH . H 6 HOH B 33 852 852 HOH HOH . H 6 HOH B 34 867 867 HOH HOH . H 6 HOH B 35 966 966 HOH HOH . H 6 HOH B 36 988 988 HOH HOH . H 6 HOH B 37 996 996 HOH HOH . H 6 HOH B 38 1010 1010 HOH HOH . H 6 HOH B 39 1015 1015 HOH HOH . H 6 HOH B 40 1082 1082 HOH HOH . H 6 HOH B 41 1145 1145 HOH HOH . H 6 HOH B 42 1255 1255 HOH HOH . H 6 HOH B 43 1369 1369 HOH HOH . H 6 HOH B 44 1370 1370 HOH HOH . H 6 HOH B 45 1372 1372 HOH HOH . H 6 HOH B 46 1374 1374 HOH HOH . H 6 HOH B 47 1375 1375 HOH HOH . H 6 HOH B 48 1377 1377 HOH HOH . H 6 HOH B 49 1384 1384 HOH HOH . H 6 HOH B 50 1403 1403 HOH HOH . H 6 HOH B 51 1409 1409 HOH HOH . H 6 HOH B 52 1411 1411 HOH HOH . H 6 HOH B 53 1414 1414 HOH HOH . H 6 HOH B 54 1415 1415 HOH HOH . H 6 HOH B 55 1416 1416 HOH HOH . H 6 HOH B 56 1419 1419 HOH HOH . H 6 HOH B 57 1428 1428 HOH HOH . H 6 HOH B 58 1436 1436 HOH HOH . H 6 HOH B 59 1439 1439 HOH HOH . H 6 HOH B 60 1460 1460 HOH HOH . H 6 HOH B 61 1504 1504 HOH HOH . H 6 HOH B 62 1509 1509 HOH HOH . H 6 HOH B 63 1520 1520 HOH HOH . H 6 HOH B 64 1523 1523 HOH HOH . H 6 HOH B 65 1524 1524 HOH HOH . I 6 HOH D 1 469 469 HOH HOH . I 6 HOH D 2 470 470 HOH HOH . I 6 HOH D 3 471 471 HOH HOH . I 6 HOH D 4 472 472 HOH HOH . I 6 HOH D 5 478 478 HOH HOH . I 6 HOH D 6 479 479 HOH HOH . I 6 HOH D 7 480 480 HOH HOH . I 6 HOH D 8 482 482 HOH HOH . I 6 HOH D 9 483 483 HOH HOH . I 6 HOH D 10 484 484 HOH HOH . I 6 HOH D 11 485 485 HOH HOH . I 6 HOH D 12 487 487 HOH HOH . I 6 HOH D 13 489 489 HOH HOH . I 6 HOH D 14 492 492 HOH HOH . I 6 HOH D 15 493 493 HOH HOH . I 6 HOH D 16 495 495 HOH HOH . I 6 HOH D 17 499 499 HOH HOH . I 6 HOH D 18 500 500 HOH HOH . I 6 HOH D 19 501 501 HOH HOH . I 6 HOH D 20 503 503 HOH HOH . I 6 HOH D 21 593 593 HOH HOH . I 6 HOH D 22 602 602 HOH HOH . I 6 HOH D 23 610 610 HOH HOH . I 6 HOH D 24 612 612 HOH HOH . I 6 HOH D 25 616 616 HOH HOH . I 6 HOH D 26 622 622 HOH HOH . I 6 HOH D 27 624 624 HOH HOH . I 6 HOH D 28 625 625 HOH HOH . I 6 HOH D 29 626 626 HOH HOH . I 6 HOH D 30 633 633 HOH HOH . I 6 HOH D 31 635 635 HOH HOH . I 6 HOH D 32 636 636 HOH HOH . I 6 HOH D 33 641 641 HOH HOH . I 6 HOH D 34 642 642 HOH HOH . I 6 HOH D 35 655 655 HOH HOH . I 6 HOH D 36 656 656 HOH HOH . I 6 HOH D 37 663 663 HOH HOH . I 6 HOH D 38 666 666 HOH HOH . I 6 HOH D 39 668 668 HOH HOH . I 6 HOH D 40 670 670 HOH HOH . I 6 HOH D 41 677 677 HOH HOH . I 6 HOH D 42 679 679 HOH HOH . I 6 HOH D 43 688 688 HOH HOH . I 6 HOH D 44 689 689 HOH HOH . I 6 HOH D 45 697 697 HOH HOH . I 6 HOH D 46 698 698 HOH HOH . I 6 HOH D 47 728 728 HOH HOH . I 6 HOH D 48 742 742 HOH HOH . I 6 HOH D 49 802 802 HOH HOH . I 6 HOH D 50 830 830 HOH HOH . I 6 HOH D 51 933 933 HOH HOH . I 6 HOH D 52 951 951 HOH HOH . I 6 HOH D 53 952 952 HOH HOH . I 6 HOH D 54 968 968 HOH HOH . I 6 HOH D 55 1090 1090 HOH HOH . I 6 HOH D 56 1262 1262 HOH HOH . I 6 HOH D 57 1322 1322 HOH HOH . I 6 HOH D 58 1371 1371 HOH HOH . I 6 HOH D 59 1379 1379 HOH HOH . I 6 HOH D 60 1380 1380 HOH HOH . I 6 HOH D 61 1386 1386 HOH HOH . I 6 HOH D 62 1389 1389 HOH HOH . I 6 HOH D 63 1392 1392 HOH HOH . I 6 HOH D 64 1394 1394 HOH HOH . I 6 HOH D 65 1395 1395 HOH HOH . I 6 HOH D 66 1396 1396 HOH HOH . I 6 HOH D 67 1400 1400 HOH HOH . I 6 HOH D 68 1402 1402 HOH HOH . I 6 HOH D 69 1404 1404 HOH HOH . I 6 HOH D 70 1457 1457 HOH HOH . I 6 HOH D 71 1465 1465 HOH HOH . I 6 HOH D 72 1498 1498 HOH HOH . I 6 HOH D 73 1514 1514 HOH HOH . I 6 HOH D 74 1515 1515 HOH HOH . I 6 HOH D 75 1517 1517 HOH HOH . I 6 HOH D 76 1518 1518 HOH HOH . I 6 HOH D 77 1521 1521 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 34.992 _atom_site.Cartn_y -2.637 _atom_site.Cartn_z 18.503 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 53.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 463 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #