data_2IZI # _model_server_result.job_id ESclYxdQOeO5dPnHl22Xpw _model_server_result.datetime_utc '2024-11-16 21:31:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2izi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2IZI # _exptl.entry_id 2IZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IZI _cell.length_a 57.7 _cell.length_b 57.7 _cell.length_c 186.07 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 70 n n C11 O12 BTN sing 71 n n C11 C10 BTN sing 72 n n O12 HO2 BTN sing 73 n n C10 C9 BTN sing 74 n n C10 H101 BTN sing 75 n n C10 H102 BTN sing 76 n n C9 C8 BTN sing 77 n n C9 H91 BTN sing 78 n n C9 H92 BTN sing 79 n n C8 C7 BTN sing 80 n n C8 H81 BTN sing 81 n n C8 H82 BTN sing 82 n n C7 C2 BTN sing 83 n n C7 H71 BTN sing 84 n n C7 H72 BTN sing 85 n n C2 S1 BTN sing 86 n n C2 C4 BTN sing 87 n n C2 H2 BTN sing 88 n n S1 C6 BTN sing 89 n n C6 C5 BTN sing 90 n n C6 H61 BTN sing 91 n n C6 H62 BTN sing 92 n n C5 N1 BTN sing 93 n n C5 C4 BTN sing 94 n n C5 H5 BTN sing 95 n n N1 C3 BTN sing 96 n n N1 HN1 BTN sing 97 n n C3 O3 BTN doub 98 n n C3 N2 BTN sing 99 n n N2 C4 BTN sing 100 n n N2 HN2 BTN sing 101 n n C4 H4 BTN sing 102 n n # _atom_sites.entry_id 2IZI _atom_sites.fract_transf_matrix[1][1] 0.017331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BTN A 1 300 300 BTN BTN . C 3 HOH A 1 136 136 HOH HOH . C 3 HOH A 2 138 138 HOH HOH . C 3 HOH A 3 143 143 HOH HOH . C 3 HOH A 4 144 144 HOH HOH . C 3 HOH A 5 148 148 HOH HOH . C 3 HOH A 6 173 173 HOH HOH . C 3 HOH A 7 175 175 HOH HOH . C 3 HOH A 8 188 188 HOH HOH . C 3 HOH A 9 192 192 HOH HOH . C 3 HOH A 10 193 193 HOH HOH . C 3 HOH A 11 205 205 HOH HOH . C 3 HOH A 12 207 207 HOH HOH . C 3 HOH A 13 212 212 HOH HOH . C 3 HOH A 14 224 224 HOH HOH . C 3 HOH A 15 228 228 HOH HOH . C 3 HOH A 16 231 231 HOH HOH . C 3 HOH A 17 233 233 HOH HOH . C 3 HOH A 18 234 234 HOH HOH . C 3 HOH A 19 244 244 HOH HOH . C 3 HOH A 20 251 251 HOH HOH . C 3 HOH A 21 253 253 HOH HOH . C 3 HOH A 22 274 274 HOH HOH . C 3 HOH A 23 278 278 HOH HOH . C 3 HOH A 24 302 302 HOH HOH . C 3 HOH A 25 305 305 HOH HOH . C 3 HOH A 26 319 319 HOH HOH . C 3 HOH A 27 341 341 HOH HOH . C 3 HOH A 28 358 358 HOH HOH . C 3 HOH A 29 380 380 HOH HOH . C 3 HOH A 30 383 383 HOH HOH . C 3 HOH A 31 495 495 HOH HOH . C 3 HOH A 32 519 519 HOH HOH . C 3 HOH A 33 546 546 HOH HOH . C 3 HOH A 34 583 583 HOH HOH . C 3 HOH A 35 589 589 HOH HOH . C 3 HOH A 36 607 607 HOH HOH . C 3 HOH A 37 610 610 HOH HOH . C 3 HOH A 38 612 612 HOH HOH . C 3 HOH A 39 613 613 HOH HOH . C 3 HOH A 40 621 621 HOH HOH . C 3 HOH A 41 636 636 HOH HOH . C 3 HOH A 42 641 641 HOH HOH . C 3 HOH A 43 644 644 HOH HOH . C 3 HOH A 44 646 646 HOH HOH . C 3 HOH A 45 651 651 HOH HOH . C 3 HOH A 46 652 652 HOH HOH . C 3 HOH A 47 654 654 HOH HOH . C 3 HOH A 48 658 658 HOH HOH . C 3 HOH A 49 672 672 HOH HOH . C 3 HOH A 50 684 684 HOH HOH . C 3 HOH A 51 692 692 HOH HOH . C 3 HOH A 52 694 694 HOH HOH . C 3 HOH A 53 703 703 HOH HOH . C 3 HOH A 54 723 723 HOH HOH . C 3 HOH A 55 737 737 HOH HOH . C 3 HOH A 56 740 740 HOH HOH . C 3 HOH A 57 744 744 HOH HOH . C 3 HOH A 58 749 749 HOH HOH . C 3 HOH A 59 750 750 HOH HOH . C 3 HOH A 60 751 751 HOH HOH . C 3 HOH A 61 752 752 HOH HOH . C 3 HOH A 62 753 753 HOH HOH . C 3 HOH A 63 757 757 HOH HOH . C 3 HOH A 64 759 759 HOH HOH . C 3 HOH A 65 760 760 HOH HOH . C 3 HOH A 66 762 762 HOH HOH . C 3 HOH A 67 765 765 HOH HOH . C 3 HOH A 68 767 767 HOH HOH . C 3 HOH A 69 768 768 HOH HOH . C 3 HOH A 70 771 771 HOH HOH . C 3 HOH A 71 772 772 HOH HOH . C 3 HOH A 72 773 773 HOH HOH . C 3 HOH A 73 775 775 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . . . B 2 9.197 4.117 -14.355 1 21.81 ? C11 BTN 300 A 1 HETATM 2 O O11 BTN . . . B 2 8.269 4.835 -14.031 1 24.26 ? O11 BTN 300 A 1 HETATM 3 O O12 BTN . . . B 2 9.11 3.137 -15.086 1 22.86 ? O12 BTN 300 A 1 HETATM 4 C C10 BTN . . . B 2 10.559 4.506 -13.809 1 17.21 ? C10 BTN 300 A 1 HETATM 5 C C9 BTN . . . B 2 11.287 3.367 -13.133 1 15.99 ? C9 BTN 300 A 1 HETATM 6 C C8 BTN . . . B 2 10.569 2.839 -11.922 1 15.16 ? C8 BTN 300 A 1 HETATM 7 C C7 BTN . . . B 2 11.446 1.703 -11.401 1 16.79 ? C7 BTN 300 A 1 HETATM 8 C C2 BTN . . . B 2 10.883 1.104 -10.095 1 18.27 ? C2 BTN 300 A 1 HETATM 9 S S1 BTN . . . B 2 10.849 2.063 -8.562 1 21.59 ? S1 BTN 300 A 1 HETATM 10 C C6 BTN . . . B 2 10.554 0.538 -7.689 1 20.85 ? C6 BTN 300 A 1 HETATM 11 C C5 BTN . . . B 2 11.209 -0.693 -8.342 1 21.04 ? C5 BTN 300 A 1 HETATM 12 N N1 BTN . . . B 2 12.514 -0.841 -7.746 1 22.51 ? N1 BTN 300 A 1 HETATM 13 C C3 BTN . . . B 2 13.492 -0.516 -8.593 1 18.28 ? C3 BTN 300 A 1 HETATM 14 O O3 BTN . . . B 2 14.695 -0.504 -8.306 1 18.76 ? O3 BTN 300 A 1 HETATM 15 N N2 BTN . . . B 2 12.989 -0.201 -9.789 1 21.17 ? N2 BTN 300 A 1 HETATM 16 C C4 BTN . . . B 2 11.545 -0.316 -9.836 1 19.42 ? C4 BTN 300 A 1 HETATM 17 H H101 BTN . . . B 2 11.158 4.882 -14.626 1 19.48 ? H101 BTN 300 A 1 HETATM 18 H H102 BTN . . . B 2 10.421 5.302 -13.102 1 21.27 ? H102 BTN 300 A 1 HETATM 19 H H91 BTN . . . B 2 11.425 2.571 -13.846 1 16.99 ? H91 BTN 300 A 1 HETATM 20 H H92 BTN . . . B 2 12.264 3.717 -12.842 1 17.91 ? H92 BTN 300 A 1 HETATM 21 H H81 BTN . . . B 2 10.422 3.608 -11.183 1 15.44 ? H81 BTN 300 A 1 HETATM 22 H H82 BTN . . . B 2 9.615 2.442 -12.227 1 15.98 ? H82 BTN 300 A 1 HETATM 23 H H71 BTN . . . B 2 11.497 0.933 -12.161 1 15.53 ? H71 BTN 300 A 1 HETATM 24 H H72 BTN . . . B 2 12.442 2.078 -11.228 1 16.84 ? H72 BTN 300 A 1 HETATM 25 H H2 BTN . . . B 2 9.849 0.882 -10.307 1 19.01 ? H2 BTN 300 A 1 HETATM 26 H H61 BTN . . . B 2 9.492 0.407 -7.647 1 20.29 ? H61 BTN 300 A 1 HETATM 27 H H62 BTN . . . B 2 10.931 0.656 -6.692 1 21.72 ? H62 BTN 300 A 1 HETATM 28 H H5 BTN . . . B 2 10.645 -1.609 -8.268 1 20.94 ? H5 BTN 300 A 1 HETATM 29 H HN1 BTN . . . B 2 12.615 -1.146 -6.831 1 20.74 ? HN1 BTN 300 A 1 HETATM 30 H HN2 BTN . . . B 2 13.521 0.084 -10.567 1 20.94 ? HN2 BTN 300 A 1 HETATM 31 H H4 BTN . . . B 2 11.235 -1.088 -10.518 1 20.52 ? H4 BTN 300 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #