data_2IZK # _model_server_result.job_id P4vX8z_sp_vO842dThtwSQ _model_server_result.datetime_utc '2024-11-16 22:19:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2izk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":300}' # _entry.id 2IZK # _exptl.entry_id 2IZK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.116 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCOLURIL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IZK _cell.length_a 58.04 _cell.length_b 58.04 _cell.length_c 174.6 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IZK _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 N4 O2' _chem_comp.formula_weight 142.116 _chem_comp.id GLL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCOLURIL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GLL doub 76 n n C1 N1 GLL sing 77 n n C1 N2 GLL sing 78 n n N1 C2 GLL sing 79 n n N1 HN1 GLL sing 80 n n N2 C3 GLL sing 81 n n N2 HN2 GLL sing 82 n n C2 C3 GLL sing 83 n n C2 N1' GLL sing 84 n n C2 H2 GLL sing 85 n n C3 N2' GLL sing 86 n n C3 H3 GLL sing 87 n n N1' C1' GLL sing 88 n n N1' HN1' GLL sing 89 n n N2' C1' GLL sing 90 n n N2' HN2' GLL sing 91 n n C1' O1' GLL doub 92 n n # _atom_sites.entry_id 2IZK _atom_sites.fract_transf_matrix[1][1] 0.017229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 301 301 ACT ACT . C 3 SO4 A 1 137 137 SO4 SO4 . D 4 GLL A 1 300 300 GLL GUR . E 5 HOH A 1 136 136 HOH HOH . E 5 HOH A 2 143 143 HOH HOH . E 5 HOH A 3 144 144 HOH HOH . E 5 HOH A 4 145 145 HOH HOH . E 5 HOH A 5 173 173 HOH HOH . E 5 HOH A 6 175 175 HOH HOH . E 5 HOH A 7 188 188 HOH HOH . E 5 HOH A 8 192 192 HOH HOH . E 5 HOH A 9 193 193 HOH HOH . E 5 HOH A 10 205 205 HOH HOH . E 5 HOH A 11 207 207 HOH HOH . E 5 HOH A 12 212 212 HOH HOH . E 5 HOH A 13 224 224 HOH HOH . E 5 HOH A 14 228 228 HOH HOH . E 5 HOH A 15 231 231 HOH HOH . E 5 HOH A 16 233 233 HOH HOH . E 5 HOH A 17 234 234 HOH HOH . E 5 HOH A 18 244 244 HOH HOH . E 5 HOH A 19 251 251 HOH HOH . E 5 HOH A 20 253 253 HOH HOH . E 5 HOH A 21 264 264 HOH HOH . E 5 HOH A 22 274 274 HOH HOH . E 5 HOH A 23 278 278 HOH HOH . E 5 HOH A 24 302 302 HOH HOH . E 5 HOH A 25 305 305 HOH HOH . E 5 HOH A 26 319 319 HOH HOH . E 5 HOH A 27 341 341 HOH HOH . E 5 HOH A 28 354 354 HOH HOH . E 5 HOH A 29 358 358 HOH HOH . E 5 HOH A 30 371 371 HOH HOH . E 5 HOH A 31 380 380 HOH HOH . E 5 HOH A 32 383 383 HOH HOH . E 5 HOH A 33 495 495 HOH HOH . E 5 HOH A 34 507 507 HOH HOH . E 5 HOH A 35 510 510 HOH HOH . E 5 HOH A 36 532 532 HOH HOH . E 5 HOH A 37 546 546 HOH HOH . E 5 HOH A 38 558 558 HOH HOH . E 5 HOH A 39 565 565 HOH HOH . E 5 HOH A 40 597 597 HOH HOH . E 5 HOH A 41 599 599 HOH HOH . E 5 HOH A 42 600 600 HOH HOH . E 5 HOH A 43 603 603 HOH HOH . E 5 HOH A 44 606 606 HOH HOH . E 5 HOH A 45 609 609 HOH HOH . E 5 HOH A 46 610 610 HOH HOH . E 5 HOH A 47 611 611 HOH HOH . E 5 HOH A 48 614 614 HOH HOH . E 5 HOH A 49 624 624 HOH HOH . E 5 HOH A 50 629 629 HOH HOH . E 5 HOH A 51 632 632 HOH HOH . E 5 HOH A 52 633 633 HOH HOH . E 5 HOH A 53 635 635 HOH HOH . E 5 HOH A 54 636 636 HOH HOH . E 5 HOH A 55 638 638 HOH HOH . E 5 HOH A 56 639 639 HOH HOH . E 5 HOH A 57 640 640 HOH HOH . E 5 HOH A 58 642 642 HOH HOH . E 5 HOH A 59 643 643 HOH HOH . E 5 HOH A 60 645 645 HOH HOH . E 5 HOH A 61 646 646 HOH HOH . E 5 HOH A 62 650 650 HOH HOH . E 5 HOH A 63 653 653 HOH HOH . E 5 HOH A 64 654 654 HOH HOH . E 5 HOH A 65 655 655 HOH HOH . E 5 HOH A 66 656 656 HOH HOH . E 5 HOH A 67 657 657 HOH HOH . E 5 HOH A 68 659 659 HOH HOH . E 5 HOH A 69 660 660 HOH HOH . E 5 HOH A 70 661 661 HOH HOH . E 5 HOH A 71 662 662 HOH HOH . E 5 HOH A 72 663 663 HOH HOH . E 5 HOH A 73 664 664 HOH HOH . E 5 HOH A 74 665 665 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLL . . . D 4 13.687 -0.626 -8.251 1 28.31 ? C1 GLL 300 A 1 HETATM 2 O O1 GLL . . . D 4 14.839 -0.743 -7.882 1 27.79 ? O1 GLL 300 A 1 HETATM 3 N N1 GLL . . . D 4 13.258 -0.3 -9.441 1 25.4 ? N1 GLL 300 A 1 HETATM 4 N N2 GLL . . . D 4 12.695 -0.83 -7.433 1 25.74 ? N2 GLL 300 A 1 HETATM 5 C C2 GLL . . . D 4 11.777 -0.342 -9.541 1 24.72 ? C2 GLL 300 A 1 HETATM 6 C C3 GLL . . . D 4 11.357 -0.675 -8.106 1 27.72 ? C3 GLL 300 A 1 HETATM 7 N N1' GLL . . . D 4 11.171 1.014 -9.749 1 23.81 ? N1' GLL 300 A 1 HETATM 8 N N2' GLL . . . D 4 10.488 0.508 -7.777 1 24.37 ? N2' GLL 300 A 1 HETATM 9 C C1' GLL . . . D 4 10.515 1.431 -8.706 1 24.28 ? C1' GLL 300 A 1 HETATM 10 O O1' GLL . . . D 4 9.976 2.503 -8.544 1 24.94 ? O1' GLL 300 A 1 HETATM 11 H HN1 GLL . . . D 4 13.792 -0.027 -10.246 1 26.4 ? HN1 GLL 300 A 1 HETATM 12 H HN2 GLL . . . D 4 12.822 -1.057 -6.501 1 25.7 ? HN2 GLL 300 A 1 HETATM 13 H H2 GLL . . . D 4 11.442 -1.053 -10.279 1 24.95 ? H2 GLL 300 A 1 HETATM 14 H H3 GLL . . . D 4 10.789 -1.594 -8.051 1 27.14 ? H3 GLL 300 A 1 HETATM 15 H HN1' GLL . . . D 4 11.276 1.537 -10.644 1 24.97 ? HN1' GLL 300 A 1 HETATM 16 H HN2' GLL . . . D 4 9.931 0.612 -6.971 1 24.32 ? HN2' GLL 300 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #