data_2IZL
#
_model_server_result.job_id            rJXqwX3iJuvvOVUkZ7jTdg 
_model_server_result.datetime_utc      '2024-11-13 14:39:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2izl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":300}' 
#
_entry.id    2IZL 
#
_exptl.entry_id    2IZL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              243.326 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-IMINOBIOTIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2IZL 
_cell.length_a            95.41 
_cell.length_b            106.54 
_cell.length_c            48.31 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2IZL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H17 N3 O2 S' 
_chem_comp.formula_weight    243.326 
_chem_comp.id                IMI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-IMINOBIOTIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 O11 IMI doub 160 n n 
C11 O12 IMI sing 161 n n 
C11 C10 IMI sing 162 n n 
O12 HO2 IMI sing 163 n n 
C10 C9 IMI sing 164 n n 
C10 H101 IMI sing 165 n n 
C10 H102 IMI sing 166 n n 
C9 C8 IMI sing 167 n n 
C9 H91 IMI sing 168 n n 
C9 H92 IMI sing 169 n n 
C8 C7 IMI sing 170 n n 
C8 H81 IMI sing 171 n n 
C8 H82 IMI sing 172 n n 
C7 C2 IMI sing 173 n n 
C7 H71 IMI sing 174 n n 
C7 H72 IMI sing 175 n n 
C2 S1 IMI sing 176 n n 
C2 C4 IMI sing 177 n n 
C2 H2 IMI sing 178 n n 
S1 C6 IMI sing 179 n n 
C6 C5 IMI sing 180 n n 
C6 H61 IMI sing 181 n n 
C6 H62 IMI sing 182 n n 
C5 N1 IMI sing 183 n n 
C5 C4 IMI sing 184 n n 
C5 H5 IMI sing 185 n n 
N1 C3 IMI sing 186 n n 
N1 HN1 IMI sing 187 n n 
C3 N3 IMI doub 188 n n 
C3 N2 IMI sing 189 n n 
N3 HN3 IMI sing 190 n n 
N2 C4 IMI sing 191 n n 
N2 HN2 IMI sing 192 n n 
C4 H4 IMI sing 193 n n 
#
_atom_sites.entry_id                     2IZL 
_atom_sites.fract_transf_matrix[1][1]    0.010481 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009386 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0207 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IMI B 1 300 300 IMI IMI . 
D 2 IMI D 1 300 300 IMI IMI . 
E 3 HOH B 1 505 505 HOH HOH . 
E 3 HOH B 2 507 507 HOH HOH . 
E 3 HOH B 3 508 508 HOH HOH . 
E 3 HOH B 4 532 532 HOH HOH . 
E 3 HOH B 5 534 534 HOH HOH . 
E 3 HOH B 6 549 549 HOH HOH . 
E 3 HOH B 7 605 605 HOH HOH . 
E 3 HOH B 8 606 606 HOH HOH . 
E 3 HOH B 9 609 609 HOH HOH . 
E 3 HOH B 10 613 613 HOH HOH . 
E 3 HOH B 11 617 617 HOH HOH . 
E 3 HOH B 12 619 619 HOH HOH . 
E 3 HOH B 13 620 620 HOH HOH . 
E 3 HOH B 14 621 621 HOH HOH . 
E 3 HOH B 15 628 628 HOH HOH . 
E 3 HOH B 16 629 629 HOH HOH . 
E 3 HOH B 17 637 637 HOH HOH . 
E 3 HOH B 18 639 639 HOH HOH . 
E 3 HOH B 19 643 643 HOH HOH . 
E 3 HOH B 20 646 646 HOH HOH . 
E 3 HOH B 21 649 649 HOH HOH . 
E 3 HOH B 22 652 652 HOH HOH . 
E 3 HOH B 23 653 653 HOH HOH . 
E 3 HOH B 24 660 660 HOH HOH . 
E 3 HOH B 25 662 662 HOH HOH . 
E 3 HOH B 26 664 664 HOH HOH . 
E 3 HOH B 27 669 669 HOH HOH . 
E 3 HOH B 28 680 680 HOH HOH . 
E 3 HOH B 29 683 683 HOH HOH . 
E 3 HOH B 30 722 722 HOH HOH . 
E 3 HOH B 31 727 727 HOH HOH . 
E 3 HOH B 32 803 803 HOH HOH . 
E 3 HOH B 33 852 852 HOH HOH . 
E 3 HOH B 34 868 868 HOH HOH . 
E 3 HOH B 35 966 966 HOH HOH . 
E 3 HOH B 36 984 984 HOH HOH . 
E 3 HOH B 37 988 988 HOH HOH . 
E 3 HOH B 38 996 996 HOH HOH . 
E 3 HOH B 39 999 999 HOH HOH . 
E 3 HOH B 40 1000 1000 HOH HOH . 
E 3 HOH B 41 1010 1010 HOH HOH . 
E 3 HOH B 42 1015 1015 HOH HOH . 
E 3 HOH B 43 1077 1077 HOH HOH . 
E 3 HOH B 44 1078 1078 HOH HOH . 
E 3 HOH B 45 1082 1082 HOH HOH . 
E 3 HOH B 46 1083 1083 HOH HOH . 
E 3 HOH B 47 1104 1104 HOH HOH . 
E 3 HOH B 48 1116 1116 HOH HOH . 
E 3 HOH B 49 1235 1235 HOH HOH . 
E 3 HOH B 50 1255 1255 HOH HOH . 
E 3 HOH B 51 1311 1311 HOH HOH . 
E 3 HOH B 52 1363 1363 HOH HOH . 
E 3 HOH B 53 1406 1406 HOH HOH . 
E 3 HOH B 54 1415 1415 HOH HOH . 
E 3 HOH B 55 1461 1461 HOH HOH . 
E 3 HOH B 56 1462 1462 HOH HOH . 
E 3 HOH B 57 1470 1470 HOH HOH . 
E 3 HOH B 58 1471 1471 HOH HOH . 
E 3 HOH B 59 1474 1474 HOH HOH . 
E 3 HOH B 60 1506 1506 HOH HOH . 
E 3 HOH B 61 1534 1534 HOH HOH . 
E 3 HOH B 62 1543 1543 HOH HOH . 
E 3 HOH B 63 1546 1546 HOH HOH . 
E 3 HOH B 64 1547 1547 HOH HOH . 
E 3 HOH B 65 1564 1564 HOH HOH . 
E 3 HOH B 66 1584 1584 HOH HOH . 
E 3 HOH B 67 1585 1585 HOH HOH . 
E 3 HOH B 68 1591 1591 HOH HOH . 
E 3 HOH B 69 1592 1592 HOH HOH . 
E 3 HOH B 70 1603 1603 HOH HOH . 
E 3 HOH B 71 1604 1604 HOH HOH . 
E 3 HOH B 72 1616 1616 HOH HOH . 
E 3 HOH B 73 1620 1620 HOH HOH . 
E 3 HOH B 74 1621 1621 HOH HOH . 
E 3 HOH B 75 1637 1637 HOH HOH . 
E 3 HOH B 76 1641 1641 HOH HOH . 
E 3 HOH B 77 1646 1646 HOH HOH . 
E 3 HOH B 78 1651 1651 HOH HOH . 
E 3 HOH B 79 1666 1666 HOH HOH . 
F 3 HOH D 1 506 506 HOH HOH . 
F 3 HOH D 2 510 510 HOH HOH . 
F 3 HOH D 3 513 513 HOH HOH . 
F 3 HOH D 4 515 515 HOH HOH . 
F 3 HOH D 5 516 516 HOH HOH . 
F 3 HOH D 6 520 520 HOH HOH . 
F 3 HOH D 7 522 522 HOH HOH . 
F 3 HOH D 8 523 523 HOH HOH . 
F 3 HOH D 9 527 527 HOH HOH . 
F 3 HOH D 10 535 535 HOH HOH . 
F 3 HOH D 11 543 543 HOH HOH . 
F 3 HOH D 12 550 550 HOH HOH . 
F 3 HOH D 13 551 551 HOH HOH . 
F 3 HOH D 14 568 568 HOH HOH . 
F 3 HOH D 15 589 589 HOH HOH . 
F 3 HOH D 16 593 593 HOH HOH . 
F 3 HOH D 17 597 597 HOH HOH . 
F 3 HOH D 18 602 602 HOH HOH . 
F 3 HOH D 19 603 603 HOH HOH . 
F 3 HOH D 20 604 604 HOH HOH . 
F 3 HOH D 21 607 607 HOH HOH . 
F 3 HOH D 22 612 612 HOH HOH . 
F 3 HOH D 23 616 616 HOH HOH . 
F 3 HOH D 24 622 622 HOH HOH . 
F 3 HOH D 25 624 624 HOH HOH . 
F 3 HOH D 26 625 625 HOH HOH . 
F 3 HOH D 27 626 626 HOH HOH . 
F 3 HOH D 28 627 627 HOH HOH . 
F 3 HOH D 29 633 633 HOH HOH . 
F 3 HOH D 30 635 635 HOH HOH . 
F 3 HOH D 31 636 636 HOH HOH . 
F 3 HOH D 32 641 641 HOH HOH . 
F 3 HOH D 33 642 642 HOH HOH . 
F 3 HOH D 34 644 644 HOH HOH . 
F 3 HOH D 35 655 655 HOH HOH . 
F 3 HOH D 36 656 656 HOH HOH . 
F 3 HOH D 37 663 663 HOH HOH . 
F 3 HOH D 38 666 666 HOH HOH . 
F 3 HOH D 39 668 668 HOH HOH . 
F 3 HOH D 40 670 670 HOH HOH . 
F 3 HOH D 41 671 671 HOH HOH . 
F 3 HOH D 42 677 677 HOH HOH . 
F 3 HOH D 43 679 679 HOH HOH . 
F 3 HOH D 44 688 688 HOH HOH . 
F 3 HOH D 45 689 689 HOH HOH . 
F 3 HOH D 46 697 697 HOH HOH . 
F 3 HOH D 47 698 698 HOH HOH . 
F 3 HOH D 48 701 701 HOH HOH . 
F 3 HOH D 49 733 733 HOH HOH . 
F 3 HOH D 50 734 734 HOH HOH . 
F 3 HOH D 51 741 741 HOH HOH . 
F 3 HOH D 52 742 742 HOH HOH . 
F 3 HOH D 53 802 802 HOH HOH . 
F 3 HOH D 54 830 830 HOH HOH . 
F 3 HOH D 55 921 921 HOH HOH . 
F 3 HOH D 56 926 926 HOH HOH . 
F 3 HOH D 57 931 931 HOH HOH . 
F 3 HOH D 58 933 933 HOH HOH . 
F 3 HOH D 59 944 944 HOH HOH . 
F 3 HOH D 60 945 945 HOH HOH . 
F 3 HOH D 61 951 951 HOH HOH . 
F 3 HOH D 62 952 952 HOH HOH . 
F 3 HOH D 63 968 968 HOH HOH . 
F 3 HOH D 64 1013 1013 HOH HOH . 
F 3 HOH D 65 1071 1071 HOH HOH . 
F 3 HOH D 66 1076 1076 HOH HOH . 
F 3 HOH D 67 1111 1111 HOH HOH . 
F 3 HOH D 68 1151 1151 HOH HOH . 
F 3 HOH D 69 1174 1174 HOH HOH . 
F 3 HOH D 70 1186 1186 HOH HOH . 
F 3 HOH D 71 1236 1236 HOH HOH . 
F 3 HOH D 72 1241 1241 HOH HOH . 
F 3 HOH D 73 1313 1313 HOH HOH . 
F 3 HOH D 74 1322 1322 HOH HOH . 
F 3 HOH D 75 1343 1343 HOH HOH . 
F 3 HOH D 76 1390 1390 HOH HOH . 
F 3 HOH D 77 1405 1405 HOH HOH . 
F 3 HOH D 78 1467 1467 HOH HOH . 
F 3 HOH D 79 1469 1469 HOH HOH . 
F 3 HOH D 80 1477 1477 HOH HOH . 
F 3 HOH D 81 1480 1480 HOH HOH . 
F 3 HOH D 82 1483 1483 HOH HOH . 
F 3 HOH D 83 1492 1492 HOH HOH . 
F 3 HOH D 84 1493 1493 HOH HOH . 
F 3 HOH D 85 1509 1509 HOH HOH . 
F 3 HOH D 86 1519 1519 HOH HOH . 
F 3 HOH D 87 1521 1521 HOH HOH . 
F 3 HOH D 88 1552 1552 HOH HOH . 
F 3 HOH D 89 1556 1556 HOH HOH . 
F 3 HOH D 90 1560 1560 HOH HOH . 
F 3 HOH D 91 1573 1573 HOH HOH . 
F 3 HOH D 92 1577 1577 HOH HOH . 
F 3 HOH D 93 1582 1582 HOH HOH . 
F 3 HOH D 94 1593 1593 HOH HOH . 
F 3 HOH D 95 1595 1595 HOH HOH . 
F 3 HOH D 96 1602 1602 HOH HOH . 
F 3 HOH D 97 1608 1608 HOH HOH . 
F 3 HOH D 98 1609 1609 HOH HOH . 
F 3 HOH D 99 1614 1614 HOH HOH . 
F 3 HOH D 100 1630 1630 HOH HOH . 
F 3 HOH D 101 1631 1631 HOH HOH . 
F 3 HOH D 102 1635 1635 HOH HOH . 
F 3 HOH D 103 1638 1638 HOH HOH . 
F 3 HOH D 104 1647 1647 HOH HOH . 
F 3 HOH D 105 1649 1649 HOH HOH . 
F 3 HOH D 106 1652 1652 HOH HOH . 
F 3 HOH D 107 1656 1656 HOH HOH . 
F 3 HOH D 108 1657 1657 HOH HOH . 
F 3 HOH D 109 1658 1658 HOH HOH . 
F 3 HOH D 110 1659 1659 HOH HOH . 
F 3 HOH D 111 1660 1660 HOH HOH . 
F 3 HOH D 112 1662 1662 HOH HOH . 
F 3 HOH D 113 1663 1663 HOH HOH . 
F 3 HOH D 114 1665 1665 HOH HOH . 
F 3 HOH D 115 1667 1667 HOH HOH . 
F 3 HOH D 116 1668 1668 HOH HOH . 
F 3 HOH D 117 1669 1669 HOH HOH . 
F 3 HOH D 118 1670 1670 HOH HOH . 
F 3 HOH D 119 1671 1671 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 IMI . . . D 2 22.56 3.317 17.316 1 23.63 ? C11 IMI 300 D 1 
HETATM 2 O O11 IMI . . . D 2 23.769 3.2 17.133 1 23.76 ? O11 IMI 300 D 1 
HETATM 3 O O12 IMI . . . D 2 21.822 2.359 17.551 1 22.8 ? O12 IMI 300 D 1 
HETATM 4 C C10 IMI . . . D 2 21.956 4.751 17.257 1 23.34 ? C10 IMI 300 D 1 
HETATM 5 C C9 IMI . . . D 2 20.545 4.779 16.584 1 23.23 ? C9 IMI 300 D 1 
HETATM 6 C C8 IMI . . . D 2 20.529 4.226 15.125 1 22.28 ? C8 IMI 300 D 1 
HETATM 7 C C7 IMI . . . D 2 19.091 4.442 14.494 1 22.57 ? C7 IMI 300 D 1 
HETATM 8 C C2 IMI . . . D 2 19.157 4.134 12.928 1 23.34 ? C2 IMI 300 D 1 
HETATM 9 S S1 IMI . . . D 2 19.936 5.325 11.831 1 23.62 ? S1 IMI 300 D 1 
HETATM 10 C C6 IMI . . . D 2 19.212 4.476 10.428 1 22.92 ? C6 IMI 300 D 1 
HETATM 11 C C5 IMI . . . D 2 17.877 3.8 10.77 1 23.52 ? C5 IMI 300 D 1 
HETATM 12 N N1 IMI . . . D 2 16.78 4.771 10.5 1 22.63 ? N1 IMI 300 D 1 
HETATM 13 C C3 IMI . . . D 2 16.2 5.183 11.594 1 22.53 ? C3 IMI 300 D 1 
HETATM 14 N N3 IMI . . . D 2 15.253 6.076 11.624 1 21.22 ? N3 IMI 300 D 1 
HETATM 15 N N2 IMI . . . D 2 16.679 4.594 12.654 1 22.14 ? N2 IMI 300 D 1 
HETATM 16 C C4 IMI . . . D 2 17.791 3.648 12.33 1 22.86 ? C4 IMI 300 D 1 
HETATM 17 H H101 IMI . . . D 2 21.891 5.137 18.265 1 23.28 ? H101 IMI 300 D 1 
HETATM 18 H H91 IMI . . . D 2 19.86 4.213 17.194 1 23.44 ? H91 IMI 300 D 1 
HETATM 19 H H92 IMI . . . D 2 20.194 5.802 16.572 1 23.33 ? H92 IMI 300 D 1 
HETATM 20 H H81 IMI . . . D 2 21.28 4.721 14.524 1 22.26 ? H81 IMI 300 D 1 
HETATM 21 H H82 IMI . . . D 2 20.752 3.17 15.144 1 22.19 ? H82 IMI 300 D 1 
HETATM 22 H H71 IMI . . . D 2 18.39 3.777 14.976 1 22.24 ? H71 IMI 300 D 1 
HETATM 23 H H72 IMI . . . D 2 18.762 5.459 14.656 1 22.31 ? H72 IMI 300 D 1 
HETATM 24 H H2 IMI . . . D 2 19.784 3.254 12.859 1 22.92 ? H2 IMI 300 D 1 
HETATM 25 H H61 IMI . . . D 2 19.912 3.726 10.091 1 23.13 ? H61 IMI 300 D 1 
HETATM 26 H H62 IMI . . . D 2 19.067 5.189 9.628 1 23.99 ? H62 IMI 300 D 1 
HETATM 27 H H5 IMI . . . D 2 17.702 2.873 10.242 1 23.44 ? H5 IMI 300 D 1 
HETATM 28 H HN1 IMI . . . D 2 16.531 5.064 9.602 1 22.5 ? HN1 IMI 300 D 1 
HETATM 29 H HN3 IMI . . . D 2 14.818 6.383 12.446 1 20.97 ? HN3 IMI 300 D 1 
HETATM 30 H HN2 IMI . . . D 2 16.348 4.753 13.562 1 22.28 ? HN2 IMI 300 D 1 
HETATM 31 H H4 IMI . . . D 2 17.528 2.642 12.622 1 23.48 ? H4 IMI 300 D 1 
HETATM 32 H HN32 IMI . . . D 2 14.893 6.517 10.827 1 20.9 ? HN32 IMI 300 D 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#