data_2J0D
#
_model_server_result.job_id            cqdbrklp2QA3LoRdvrQNGg 
_model_server_result.datetime_utc      '2024-11-24 18:40:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2j0d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1497}' 
#
_entry.id    2J0D 
#
_exptl.entry_id    2J0D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2J0D 
_cell.length_a            67.254 
_cell.length_b            210.706 
_cell.length_c            161.246 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2J0D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 420 A CYS 442 1_555 C FE HEM . A HEM 1497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc2 B SG CYS 420 B CYS 442 1_555 E FE HEM . B HEM 1497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 249 n n 
CHA C4D HEM doub 250 n n 
CHA HHA HEM sing 251 n n 
CHB C4A HEM sing 252 n n 
CHB C1B HEM doub 253 n n 
CHB HHB HEM sing 254 n n 
CHC C4B HEM sing 255 n n 
CHC C1C HEM doub 256 n n 
CHC HHC HEM sing 257 n n 
CHD C4C HEM doub 258 n n 
CHD C1D HEM sing 259 n n 
CHD HHD HEM sing 260 n n 
C1A C2A HEM doub 261 n y 
C1A NA HEM sing 262 n y 
C2A C3A HEM sing 263 n y 
C2A CAA HEM sing 264 n n 
C3A C4A HEM doub 265 n y 
C3A CMA HEM sing 266 n n 
C4A NA HEM sing 267 n y 
CMA HMA HEM sing 268 n n 
CMA HMAA HEM sing 269 n n 
CMA HMAB HEM sing 270 n n 
CAA CBA HEM sing 271 n n 
CAA HAA HEM sing 272 n n 
CAA HAAA HEM sing 273 n n 
CBA CGA HEM sing 274 n n 
CBA HBA HEM sing 275 n n 
CBA HBAA HEM sing 276 n n 
CGA O1A HEM doub 277 n n 
CGA O2A HEM sing 278 n n 
C1B C2B HEM sing 279 n n 
C1B NB HEM sing 280 n n 
C2B C3B HEM doub 281 n n 
C2B CMB HEM sing 282 n n 
C3B C4B HEM sing 283 n n 
C3B CAB HEM sing 284 n n 
C4B NB HEM doub 285 n n 
CMB HMB HEM sing 286 n n 
CMB HMBA HEM sing 287 n n 
CMB HMBB HEM sing 288 n n 
CAB CBB HEM doub 289 n n 
CAB HAB HEM sing 290 n n 
CBB HBB HEM sing 291 n n 
CBB HBBA HEM sing 292 n n 
C1C C2C HEM sing 293 n y 
C1C NC HEM sing 294 n y 
C2C C3C HEM doub 295 n y 
C2C CMC HEM sing 296 n n 
C3C C4C HEM sing 297 n y 
C3C CAC HEM sing 298 n n 
C4C NC HEM sing 299 n y 
CMC HMC HEM sing 300 n n 
CMC HMCA HEM sing 301 n n 
CMC HMCB HEM sing 302 n n 
CAC CBC HEM doub 303 n n 
CAC HAC HEM sing 304 n n 
CBC HBC HEM sing 305 n n 
CBC HBCA HEM sing 306 n n 
C1D C2D HEM sing 307 n n 
C1D ND HEM doub 308 n n 
C2D C3D HEM doub 309 n n 
C2D CMD HEM sing 310 n n 
C3D C4D HEM sing 311 n n 
C3D CAD HEM sing 312 n n 
C4D ND HEM sing 313 n n 
CMD HMD HEM sing 314 n n 
CMD HMDA HEM sing 315 n n 
CMD HMDB HEM sing 316 n n 
CAD CBD HEM sing 317 n n 
CAD HAD HEM sing 318 n n 
CAD HADA HEM sing 319 n n 
CBD CGD HEM sing 320 n n 
CBD HBD HEM sing 321 n n 
CBD HBDA HEM sing 322 n n 
CGD O1D HEM doub 323 n n 
CGD O2D HEM sing 324 n n 
O2A H2A HEM sing 325 n n 
O2D H2D HEM sing 326 n n 
FE NA HEM sing 327 n n 
FE NB HEM sing 328 n n 
FE NC HEM sing 329 n n 
FE ND HEM sing 330 n n 
#
_atom_sites.entry_id                     2J0D 
_atom_sites.fract_transf_matrix[1][1]    0.014869 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006202 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 1497 1497 HEM HEM . 
D 3 ERY A 1 1498 1498 ERY ERY . 
E 2 HEM B 1 1497 1497 HEM HEM . 
F 4 HOH A 1 2001 2001 HOH HOH . 
F 4 HOH A 2 2002 2002 HOH HOH . 
F 4 HOH A 3 2003 2003 HOH HOH . 
F 4 HOH A 4 2004 2004 HOH HOH . 
F 4 HOH A 5 2005 2005 HOH HOH . 
F 4 HOH A 6 2006 2006 HOH HOH . 
F 4 HOH A 7 2007 2007 HOH HOH . 
F 4 HOH A 8 2008 2008 HOH HOH . 
F 4 HOH A 9 2009 2009 HOH HOH . 
F 4 HOH A 10 2010 2010 HOH HOH . 
F 4 HOH A 11 2011 2011 HOH HOH . 
F 4 HOH A 12 2012 2012 HOH HOH . 
F 4 HOH A 13 2013 2013 HOH HOH . 
F 4 HOH A 14 2014 2014 HOH HOH . 
F 4 HOH A 15 2015 2015 HOH HOH . 
F 4 HOH A 16 2016 2016 HOH HOH . 
F 4 HOH A 17 2017 2017 HOH HOH . 
F 4 HOH A 18 2018 2018 HOH HOH . 
F 4 HOH A 19 2019 2019 HOH HOH . 
F 4 HOH A 20 2020 2020 HOH HOH . 
F 4 HOH A 21 2021 2021 HOH HOH . 
F 4 HOH A 22 2022 2022 HOH HOH . 
F 4 HOH A 23 2023 2023 HOH HOH . 
F 4 HOH A 24 2024 2024 HOH HOH . 
F 4 HOH A 25 2025 2025 HOH HOH . 
F 4 HOH A 26 2026 2026 HOH HOH . 
F 4 HOH A 27 2027 2027 HOH HOH . 
G 4 HOH B 1 2001 2001 HOH HOH . 
G 4 HOH B 2 2002 2002 HOH HOH . 
G 4 HOH B 3 2003 2003 HOH HOH . 
G 4 HOH B 4 2004 2004 HOH HOH . 
G 4 HOH B 5 2005 2005 HOH HOH . 
G 4 HOH B 6 2006 2006 HOH HOH . 
G 4 HOH B 7 2008 2008 HOH HOH . 
G 4 HOH B 8 2009 2009 HOH HOH . 
G 4 HOH B 9 2010 2010 HOH HOH . 
G 4 HOH B 10 2011 2011 HOH HOH . 
G 4 HOH B 11 2012 2012 HOH HOH . 
G 4 HOH B 12 2013 2013 HOH HOH . 
G 4 HOH B 13 2014 2014 HOH HOH . 
G 4 HOH B 14 2015 2015 HOH HOH . 
G 4 HOH B 15 2016 2016 HOH HOH . 
G 4 HOH B 16 2017 2017 HOH HOH . 
G 4 HOH B 17 2018 2018 HOH HOH . 
G 4 HOH B 18 2019 2019 HOH HOH . 
G 4 HOH B 19 2020 2020 HOH HOH . 
G 4 HOH B 20 2021 2021 HOH HOH . 
G 4 HOH B 21 2022 2022 HOH HOH . 
G 4 HOH B 22 2023 2023 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 2 -13.823 -13.744 17.133 1 24.42 ? CHA HEM 1497 A 1 
HETATM 2 C CHB HEM . . . C 2 -18.001 -15.944 18.12 1 25.22 ? CHB HEM 1497 A 1 
HETATM 3 C CHC HEM . . . C 2 -16.11 -20.37 17.884 1 23.25 ? CHC HEM 1497 A 1 
HETATM 4 C CHD HEM . . . C 2 -11.806 -18.205 16.878 1 24.64 ? CHD HEM 1497 A 1 
HETATM 5 C C1A HEM . . . C 2 -15.151 -13.923 17.403 1 23.93 ? C1A HEM 1497 A 1 
HETATM 6 C C2A HEM . . . C 2 -16.142 -12.945 17.538 1 24.64 ? C2A HEM 1497 A 1 
HETATM 7 C C3A HEM . . . C 2 -17.313 -13.583 17.805 1 24.81 ? C3A HEM 1497 A 1 
HETATM 8 C C4A HEM . . . C 2 -17.058 -14.977 17.856 1 25.76 ? C4A HEM 1497 A 1 
HETATM 9 C CMA HEM . . . C 2 -18.682 -12.896 18.009 1 24.51 ? CMA HEM 1497 A 1 
HETATM 10 C CAA HEM . . . C 2 -16.069 -11.349 17.42 1 23.59 ? CAA HEM 1497 A 1 
HETATM 11 C CBA HEM . . . C 2 -16.489 -10.888 16.002 1 23.22 ? CBA HEM 1497 A 1 
HETATM 12 C CGA HEM . . . C 2 -16.433 -9.388 15.869 1 25.08 ? CGA HEM 1497 A 1 
HETATM 13 O O1A HEM . . . C 2 -16.005 -8.773 16.881 1 27.06 ? O1A HEM 1497 A 1 
HETATM 14 O O2A HEM . . . C 2 -16.793 -8.797 14.796 1 22.89 ? O2A HEM 1497 A 1 
HETATM 15 C C1B HEM . . . C 2 -17.885 -17.31 18.113 1 24.69 ? C1B HEM 1497 A 1 
HETATM 16 C C2B HEM . . . C 2 -18.963 -18.229 18.324 1 24.8 ? C2B HEM 1497 A 1 
HETATM 17 C C3B HEM . . . C 2 -18.396 -19.445 18.273 1 24.47 ? C3B HEM 1497 A 1 
HETATM 18 C C4B HEM . . . C 2 -17.001 -19.368 18.026 1 23.76 ? C4B HEM 1497 A 1 
HETATM 19 C CMB HEM . . . C 2 -20.464 -17.789 18.56 1 22.94 ? CMB HEM 1497 A 1 
HETATM 20 C CAB HEM . . . C 2 -19.079 -20.685 18.481 1 26.48 ? CAB HEM 1497 A 1 
HETATM 21 C CBB HEM . . . C 2 -20.443 -20.503 18.673 1 29.1 ? CBB HEM 1497 A 1 
HETATM 22 C C1C HEM . . . C 2 -14.783 -20.182 17.542 1 23.01 ? C1C HEM 1497 A 1 
HETATM 23 C C2C HEM . . . C 2 -13.752 -21.273 17.321 1 23.08 ? C2C HEM 1497 A 1 
HETATM 24 C C3C HEM . . . C 2 -12.603 -20.653 17.035 1 23.64 ? C3C HEM 1497 A 1 
HETATM 25 C C4C HEM . . . C 2 -12.814 -19.238 17.076 1 24.14 ? C4C HEM 1497 A 1 
HETATM 26 C CMC HEM . . . C 2 -14.18 -22.766 17.45 1 22.43 ? CMC HEM 1497 A 1 
HETATM 27 C CAC HEM . . . C 2 -11.207 -21.281 16.671 1 23.98 ? CAC HEM 1497 A 1 
HETATM 28 C CBC HEM . . . C 2 -11.253 -22.331 15.748 1 23.9 ? CBC HEM 1497 A 1 
HETATM 29 C C1D HEM . . . C 2 -11.935 -16.824 16.931 1 24.77 ? C1D HEM 1497 A 1 
HETATM 30 C C2D HEM . . . C 2 -10.831 -15.851 16.831 1 23.92 ? C2D HEM 1497 A 1 
HETATM 31 C C3D HEM . . . C 2 -11.413 -14.457 16.917 1 25.14 ? C3D HEM 1497 A 1 
HETATM 32 C C4D HEM . . . C 2 -12.851 -14.759 17.043 1 24.16 ? C4D HEM 1497 A 1 
HETATM 33 C CMD HEM . . . C 2 -9.343 -16.141 16.689 1 24.49 ? CMD HEM 1497 A 1 
HETATM 34 C CAD HEM . . . C 2 -10.745 -12.944 16.848 1 27.67 ? CAD HEM 1497 A 1 
HETATM 35 C CBD HEM . . . C 2 -10.602 -12.581 15.338 1 31.08 ? CBD HEM 1497 A 1 
HETATM 36 C CGD HEM . . . C 2 -9.798 -11.331 15.122 1 34.47 ? CGD HEM 1497 A 1 
HETATM 37 O O1D HEM . . . C 2 -9.631 -10.539 16.084 1 35.88 ? O1D HEM 1497 A 1 
HETATM 38 O O2D HEM . . . C 2 -9.32 -11.119 13.971 1 36.05 ? O2D HEM 1497 A 1 
HETATM 39 N NA HEM . . . C 2 -15.73 -15.19 17.609 1 23.96 ? NA HEM 1497 A 1 
HETATM 40 N NB HEM . . . C 2 -16.711 -17.996 17.927 1 23.07 ? NB HEM 1497 A 1 
HETATM 41 N NC HEM . . . C 2 -14.155 -19.004 17.394 1 24.54 ? NC HEM 1497 A 1 
HETATM 42 N ND HEM . . . C 2 -13.112 -16.106 17.048 1 24.12 ? ND HEM 1497 A 1 
HETATM 43 FE FE HEM . . . C 2 -14.923 -17.108 17.435 1 25.98 ? FE HEM 1497 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           432 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#