data_2J0D
#
_model_server_result.job_id            iNrams6dd5AG8LOV31VFEw 
_model_server_result.datetime_utc      '2024-11-24 18:32:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2j0d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1498}' 
#
_entry.id    2J0D 
#
_exptl.entry_id    2J0D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              733.927 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ERYTHROMYCIN A' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2J0D 
_cell.length_a            67.254 
_cell.length_b            210.706 
_cell.length_c            161.246 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2J0D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 420 A CYS 442 1_555 C FE HEM . A HEM 1497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc2 B SG CYS 420 B CYS 442 1_555 E FE HEM . B HEM 1497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
#
_chem_comp.formula           'C37 H67 N O13' 
_chem_comp.formula_weight    733.927 
_chem_comp.id                ERY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ERYTHROMYCIN A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C11 ERY sing 83 n n 
C10 C9 ERY sing 84 n n 
C10 C34 ERY sing 85 n n 
C10 H10 ERY sing 86 n n 
C11 C12 ERY sing 87 n n 
C11 O12 ERY sing 88 n n 
C11 H11 ERY sing 89 n n 
C12 C13 ERY sing 90 n n 
C12 C35 ERY sing 91 n n 
C12 O13 ERY sing 92 n n 
C13 O2 ERY sing 93 n n 
C13 C36 ERY sing 94 n n 
C13 H13 ERY sing 95 n n 
O2 C1 ERY sing 96 n n 
C2 C3 ERY sing 97 n n 
C2 C1 ERY sing 98 n n 
C2 C30 ERY sing 99 n n 
C2 H2 ERY sing 100 n n 
C3 C4 ERY sing 101 n n 
C3 O3 ERY sing 102 n n 
C3 H3 ERY sing 103 n n 
C4 C5 ERY sing 104 n n 
C4 C31 ERY sing 105 n n 
C4 H4 ERY sing 106 n n 
C5 C6 ERY sing 107 n n 
C5 O7 ERY sing 108 n n 
C5 H5 ERY sing 109 n n 
C6 C7 ERY sing 110 n n 
C6 C32 ERY sing 111 n n 
C6 O10 ERY sing 112 n n 
C7 C8 ERY sing 113 n n 
C7 H71 ERY sing 114 n n 
C7 H72 ERY sing 115 n n 
C8 C9 ERY sing 116 n n 
C8 C33 ERY sing 117 n n 
C8 H8 ERY sing 118 n n 
C9 O11 ERY doub 119 n n 
C1 O1 ERY doub 120 n n 
O3 C14 ERY sing 121 n n 
O7 C22 ERY sing 122 n n 
C34 H341 ERY sing 123 n n 
C34 H342 ERY sing 124 n n 
C34 H343 ERY sing 125 n n 
C33 H331 ERY sing 126 n n 
C33 H332 ERY sing 127 n n 
C33 H333 ERY sing 128 n n 
C35 H351 ERY sing 129 n n 
C35 H352 ERY sing 130 n n 
C35 H353 ERY sing 131 n n 
O12 HO12 ERY sing 132 n n 
O13 HO13 ERY sing 133 n n 
C36 C37 ERY sing 134 n n 
C36 H361 ERY sing 135 n n 
C36 H362 ERY sing 136 n n 
C30 H301 ERY sing 137 n n 
C30 H302 ERY sing 138 n n 
C30 H303 ERY sing 139 n n 
C32 H321 ERY sing 140 n n 
C32 H322 ERY sing 141 n n 
C32 H323 ERY sing 142 n n 
O10 HO10 ERY sing 143 n n 
C22 C23 ERY sing 144 n n 
C22 O9 ERY sing 145 n n 
C22 H22 ERY sing 146 n n 
C23 C24 ERY sing 147 n n 
C23 O8 ERY sing 148 n n 
C23 H23 ERY sing 149 n n 
C24 C25 ERY sing 150 n n 
C24 N1 ERY sing 151 n n 
C24 H24 ERY sing 152 n n 
C25 C26 ERY sing 153 n n 
C25 H251 ERY sing 154 n n 
C25 H252 ERY sing 155 n n 
C26 O9 ERY sing 156 n n 
C26 C27 ERY sing 157 n n 
C26 H26 ERY sing 158 n n 
N1 C28 ERY sing 159 n n 
N1 C29 ERY sing 160 n n 
C27 H271 ERY sing 161 n n 
C27 H272 ERY sing 162 n n 
C27 H273 ERY sing 163 n n 
O8 HO8 ERY sing 164 n n 
C28 H281 ERY sing 165 n n 
C28 H282 ERY sing 166 n n 
C28 H283 ERY sing 167 n n 
C14 C15 ERY sing 168 n n 
C14 O4 ERY sing 169 n n 
C14 H14 ERY sing 170 n n 
C15 C16 ERY sing 171 n n 
C15 H151 ERY sing 172 n n 
C15 H152 ERY sing 173 n n 
C16 C17 ERY sing 174 n n 
C16 O5 ERY sing 175 n n 
C16 C19 ERY sing 176 n n 
C17 C18 ERY sing 177 n n 
C17 O6 ERY sing 178 n n 
C17 H17 ERY sing 179 n n 
C18 O4 ERY sing 180 n n 
C18 C21 ERY sing 181 n n 
C18 H18 ERY sing 182 n n 
O5 C20 ERY sing 183 n n 
O6 HO6 ERY sing 184 n n 
C20 H201 ERY sing 185 n n 
C20 H202 ERY sing 186 n n 
C20 H203 ERY sing 187 n n 
C29 H291 ERY sing 188 n n 
C29 H292 ERY sing 189 n n 
C29 H293 ERY sing 190 n n 
C21 H211 ERY sing 191 n n 
C21 H212 ERY sing 192 n n 
C21 H213 ERY sing 193 n n 
C37 H371 ERY sing 194 n n 
C37 H372 ERY sing 195 n n 
C37 H373 ERY sing 196 n n 
C31 H311 ERY sing 197 n n 
C31 H312 ERY sing 198 n n 
C31 H313 ERY sing 199 n n 
C19 H191 ERY sing 200 n n 
C19 H192 ERY sing 201 n n 
C19 H193 ERY sing 202 n n 
#
_atom_sites.entry_id                     2J0D 
_atom_sites.fract_transf_matrix[1][1]    0.014869 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006202 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 1497 1497 HEM HEM . 
D 3 ERY A 1 1498 1498 ERY ERY . 
E 2 HEM B 1 1497 1497 HEM HEM . 
F 4 HOH A 1 2001 2001 HOH HOH . 
F 4 HOH A 2 2002 2002 HOH HOH . 
F 4 HOH A 3 2003 2003 HOH HOH . 
F 4 HOH A 4 2004 2004 HOH HOH . 
F 4 HOH A 5 2005 2005 HOH HOH . 
F 4 HOH A 6 2006 2006 HOH HOH . 
F 4 HOH A 7 2007 2007 HOH HOH . 
F 4 HOH A 8 2008 2008 HOH HOH . 
F 4 HOH A 9 2009 2009 HOH HOH . 
F 4 HOH A 10 2010 2010 HOH HOH . 
F 4 HOH A 11 2011 2011 HOH HOH . 
F 4 HOH A 12 2012 2012 HOH HOH . 
F 4 HOH A 13 2013 2013 HOH HOH . 
F 4 HOH A 14 2014 2014 HOH HOH . 
F 4 HOH A 15 2015 2015 HOH HOH . 
F 4 HOH A 16 2016 2016 HOH HOH . 
F 4 HOH A 17 2017 2017 HOH HOH . 
F 4 HOH A 18 2018 2018 HOH HOH . 
F 4 HOH A 19 2019 2019 HOH HOH . 
F 4 HOH A 20 2020 2020 HOH HOH . 
F 4 HOH A 21 2021 2021 HOH HOH . 
F 4 HOH A 22 2022 2022 HOH HOH . 
F 4 HOH A 23 2023 2023 HOH HOH . 
F 4 HOH A 24 2024 2024 HOH HOH . 
F 4 HOH A 25 2025 2025 HOH HOH . 
F 4 HOH A 26 2026 2026 HOH HOH . 
F 4 HOH A 27 2027 2027 HOH HOH . 
G 4 HOH B 1 2001 2001 HOH HOH . 
G 4 HOH B 2 2002 2002 HOH HOH . 
G 4 HOH B 3 2003 2003 HOH HOH . 
G 4 HOH B 4 2004 2004 HOH HOH . 
G 4 HOH B 5 2005 2005 HOH HOH . 
G 4 HOH B 6 2006 2006 HOH HOH . 
G 4 HOH B 7 2008 2008 HOH HOH . 
G 4 HOH B 8 2009 2009 HOH HOH . 
G 4 HOH B 9 2010 2010 HOH HOH . 
G 4 HOH B 10 2011 2011 HOH HOH . 
G 4 HOH B 11 2012 2012 HOH HOH . 
G 4 HOH B 12 2013 2013 HOH HOH . 
G 4 HOH B 13 2014 2014 HOH HOH . 
G 4 HOH B 14 2015 2015 HOH HOH . 
G 4 HOH B 15 2016 2016 HOH HOH . 
G 4 HOH B 16 2017 2017 HOH HOH . 
G 4 HOH B 17 2018 2018 HOH HOH . 
G 4 HOH B 18 2019 2019 HOH HOH . 
G 4 HOH B 19 2020 2020 HOH HOH . 
G 4 HOH B 20 2021 2021 HOH HOH . 
G 4 HOH B 21 2022 2022 HOH HOH . 
G 4 HOH B 22 2023 2023 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 ERY . . . D 3 -11.357 -14.139 23.466 1 89.42 ? C10 ERY 1498 A 1 
HETATM 2 C C11 ERY . . . D 3 -12.447 -13.414 22.658 1 89.72 ? C11 ERY 1498 A 1 
HETATM 3 C C12 ERY . . . D 3 -13.746 -14.133 22.308 1 89.98 ? C12 ERY 1498 A 1 
HETATM 4 C C13 ERY . . . D 3 -14.862 -13.127 21.909 1 90.29 ? C13 ERY 1498 A 1 
HETATM 5 O O2 ERY . . . D 3 -15.37 -12.396 23.029 1 91.32 ? O2 ERY 1498 A 1 
HETATM 6 C C2 ERY . . . D 3 -15.958 -10.511 24.479 1 93.99 ? C2 ERY 1498 A 1 
HETATM 7 C C3 ERY . . . D 3 -15.194 -10.206 25.759 1 94.74 ? C3 ERY 1498 A 1 
HETATM 8 C C4 ERY . . . D 3 -14.541 -11.377 26.509 1 93.89 ? C4 ERY 1498 A 1 
HETATM 9 C C5 ERY . . . D 3 -13.24 -10.877 27.174 1 93.45 ? C5 ERY 1498 A 1 
HETATM 10 C C6 ERY . . . D 3 -11.921 -11.165 26.421 1 92.93 ? C6 ERY 1498 A 1 
HETATM 11 C C7 ERY . . . D 3 -11.521 -12.649 26.322 1 91.47 ? C7 ERY 1498 A 1 
HETATM 12 C C8 ERY . . . D 3 -10.194 -12.937 25.587 1 90.13 ? C8 ERY 1498 A 1 
HETATM 13 C C9 ERY . . . D 3 -10.371 -13.155 24.097 1 89.6 ? C9 ERY 1498 A 1 
HETATM 14 O O11 ERY . . . D 3 -9.651 -12.503 23.374 1 89.38 ? O11 ERY 1498 A 1 
HETATM 15 C C1 ERY . . . D 3 -15.118 -11.153 23.397 1 92.76 ? C1 ERY 1498 A 1 
HETATM 16 O O1 ERY . . . D 3 -14.226 -10.493 22.91 1 93.11 ? O1 ERY 1498 A 1 
HETATM 17 O O3 ERY . . . D 3 -15.945 -9.346 26.653 1 96.73 ? O3 ERY 1498 A 1 
HETATM 18 O O7 ERY . . . D 3 -13.261 -10.869 28.626 1 94.14 ? O7 ERY 1498 A 1 
HETATM 19 C C34 ERY . . . D 3 -10.606 -15.255 22.751 1 88.75 ? C34 ERY 1498 A 1 
HETATM 20 C C33 ERY . . . D 3 -9.52 -14.181 26.192 1 90.23 ? C33 ERY 1498 A 1 
HETATM 21 C C35 ERY . . . D 3 -14.238 -14.997 23.488 1 89.74 ? C35 ERY 1498 A 1 
HETATM 22 O O12 ERY . . . D 3 -11.888 -12.793 21.49 1 88.95 ? O12 ERY 1498 A 1 
HETATM 23 O O13 ERY . . . D 3 -13.601 -14.985 21.168 1 89.9 ? O13 ERY 1498 A 1 
HETATM 24 C C36 ERY . . . D 3 -15.92 -13.711 20.98 1 90.02 ? C36 ERY 1498 A 1 
HETATM 25 C C30 ERY . . . D 3 -16.759 -9.331 23.907 1 93.78 ? C30 ERY 1498 A 1 
HETATM 26 C C32 ERY . . . D 3 -10.8 -10.368 27.134 1 93.18 ? C32 ERY 1498 A 1 
HETATM 27 O O10 ERY . . . D 3 -11.965 -10.579 25.119 1 93.22 ? O10 ERY 1498 A 1 
HETATM 28 C C22 ERY . . . D 3 -12.682 -11.844 29.521 1 93.9 ? C22 ERY 1498 A 1 
HETATM 29 C C23 ERY . . . D 3 -13.072 -11.382 30.94 1 93.45 ? C23 ERY 1498 A 1 
HETATM 30 C C24 ERY . . . D 3 -12.851 -12.453 32.04 1 93.11 ? C24 ERY 1498 A 1 
HETATM 31 C C25 ERY . . . D 3 -13.314 -13.849 31.568 1 93.62 ? C25 ERY 1498 A 1 
HETATM 32 C C26 ERY . . . D 3 -12.687 -14.171 30.206 1 93.77 ? C26 ERY 1498 A 1 
HETATM 33 O O9 ERY . . . D 3 -13.141 -13.185 29.265 1 94.32 ? O9 ERY 1498 A 1 
HETATM 34 N N1 ERY . . . D 3 -13.506 -12.043 33.313 1 92.39 ? N1 ERY 1498 A 1 
HETATM 35 C C27 ERY . . . D 3 -13.09 -15.58 29.756 1 93.42 ? C27 ERY 1498 A 1 
HETATM 36 O O8 ERY . . . D 3 -12.311 -10.206 31.237 1 93.29 ? O8 ERY 1498 A 1 
HETATM 37 C C28 ERY . . . D 3 -12.976 -12.743 34.495 1 91.93 ? C28 ERY 1498 A 1 
HETATM 38 C C14 ERY . . . D 3 -15.341 -8.055 26.887 1 98.59 ? C14 ERY 1498 A 1 
HETATM 39 C C15 ERY . . . D 3 -16.344 -6.926 26.558 1 99.76 ? C15 ERY 1498 A 1 
HETATM 40 C C16 ERY . . . D 3 -17.371 -6.646 27.67 1 100.29 ? C16 ERY 1498 A 1 
HETATM 41 C C17 ERY . . . D 3 -16.662 -6.547 29.026 1 99.82 ? C17 ERY 1498 A 1 
HETATM 42 C C18 ERY . . . D 3 -15.705 -7.698 29.312 1 99.36 ? C18 ERY 1498 A 1 
HETATM 43 O O4 ERY . . . D 3 -14.826 -7.972 28.228 1 98.92 ? O4 ERY 1498 A 1 
HETATM 44 O O5 ERY . . . D 3 -18.365 -7.714 27.715 1 100.87 ? O5 ERY 1498 A 1 
HETATM 45 O O6 ERY . . . D 3 -17.619 -6.426 30.092 1 100.06 ? O6 ERY 1498 A 1 
HETATM 46 C C20 ERY . . . D 3 -19.145 -7.985 26.537 1 100.38 ? C20 ERY 1498 A 1 
HETATM 47 C C29 ERY . . . D 3 -14.981 -12.018 33.309 1 92.12 ? C29 ERY 1498 A 1 
HETATM 48 C C21 ERY . . . D 3 -14.914 -7.479 30.602 1 99.46 ? C21 ERY 1498 A 1 
HETATM 49 C C37 ERY . . . D 3 -16.968 -14.538 21.732 1 89.63 ? C37 ERY 1498 A 1 
HETATM 50 C C31 ERY . . . D 3 -15.498 -12.198 27.368 1 93.06 ? C31 ERY 1498 A 1 
HETATM 51 C C19 ERY . . . D 3 -18.117 -5.335 27.372 1 100.51 ? C19 ERY 1498 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           51 
#