data_2J0Q # _model_server_result.job_id gx6iWYpEP-lSMIKn-A6lbw _model_server_result.datetime_utc '2024-12-26 13:12:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j0q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1413}' # _entry.id 2J0Q # _exptl.entry_id 2J0Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2J0Q _cell.length_a 69.15 _cell.length_b 161.24 _cell.length_c 193.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J0Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J,K,L,O 1 1 B,F,G,H,I,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 L N N ? 7 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 88 A THR 89 1_555 K MG MG . A MG 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 A OD2 ASP 186 A ASP 187 1_555 K MG MG . A MG 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc3 A OE2 GLU 187 A GLU 188 1_555 K MG MG . A MG 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc4 K MG MG . A MG 1412 1_555 L O1G ANP . A ANP 1413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc5 K MG MG . A MG 1412 1_555 L O1B ANP . A ANP 1413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc6 B OG1 THR 88 B THR 89 1_555 M MG MG . B MG 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc7 B OD2 ASP 186 B ASP 187 1_555 M MG MG . B MG 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc8 B OE2 GLU 187 B GLU 188 1_555 M MG MG . B MG 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc9 M MG MG . B MG 1412 1_555 N O1B ANP . B ANP 1413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc10 M MG MG . B MG 1412 1_555 N N3B ANP . B ANP 1413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc11 M MG MG . B MG 1412 1_555 N O1G ANP . B ANP 1413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2J0Q _atom_sites.fract_transf_matrix[1][1] 0.014461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005175 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 MG A 1 1412 1412 MG MG . L 7 ANP A 1 1413 1413 ANP ANP . M 6 MG B 1 1412 1412 MG MG . N 7 ANP B 1 1413 1413 ANP ANP . O 8 HOH A 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . N 7 6.426 28.686 74.55 1 50.88 ? PG ANP 1413 B 1 HETATM 2 O O1G ANP . . . N 7 4.936 28.544 74.258 1 50.54 ? O1G ANP 1413 B 1 HETATM 3 O O2G ANP . . . N 7 6.806 28.771 76 1 51.99 ? O2G ANP 1413 B 1 HETATM 4 O O3G ANP . . . N 7 7.32 27.747 73.791 1 50.82 ? O3G ANP 1413 B 1 HETATM 5 P PB ANP . . . N 7 6.672 30.362 72.232 1 47.9 ? PB ANP 1413 B 1 HETATM 6 O O1B ANP . . . N 7 5.19 30.575 72.079 1 47.75 ? O1B ANP 1413 B 1 HETATM 7 O O2B ANP . . . N 7 7.287 29.112 71.647 1 47.5 ? O2B ANP 1413 B 1 HETATM 8 N N3B ANP . . . N 7 6.862 30.252 73.944 1 48.89 ? N3B ANP 1413 B 1 HETATM 9 P PA ANP . . . N 7 8.689 32.472 71.988 1 41.42 ? PA ANP 1413 B 1 HETATM 10 O O1A ANP . . . N 7 8.759 32.546 73.485 1 41.42 ? O1A ANP 1413 B 1 HETATM 11 O O2A ANP . . . N 7 8.632 33.75 71.204 1 41.19 ? O2A ANP 1413 B 1 HETATM 12 O O3A ANP . . . N 7 7.374 31.65 71.536 1 45.47 ? O3A ANP 1413 B 1 HETATM 13 O O5' ANP . . . N 7 9.905 31.587 71.424 1 40.47 ? O5' ANP 1413 B 1 HETATM 14 C C5' ANP . . . N 7 11.057 31.259 72.205 1 40 ? C5' ANP 1413 B 1 HETATM 15 C C4' ANP . . . N 7 12.322 32.041 71.807 1 39.2 ? C4' ANP 1413 B 1 HETATM 16 O O4' ANP . . . N 7 12.66 31.923 70.414 1 39.74 ? O4' ANP 1413 B 1 HETATM 17 C C3' ANP . . . N 7 12.204 33.524 72.09 1 38.04 ? C3' ANP 1413 B 1 HETATM 18 O O3' ANP . . . N 7 13.331 33.921 72.857 1 37.34 ? O3' ANP 1413 B 1 HETATM 19 C C2' ANP . . . N 7 12.208 34.205 70.739 1 38.37 ? C2' ANP 1413 B 1 HETATM 20 O O2' ANP . . . N 7 12.856 35.479 70.776 1 37.17 ? O2' ANP 1413 B 1 HETATM 21 C C1' ANP . . . N 7 12.914 33.209 69.825 1 40.4 ? C1' ANP 1413 B 1 HETATM 22 N N9 ANP . . . N 7 12.458 33.313 68.396 1 41.27 ? N9 ANP 1413 B 1 HETATM 23 C C8 ANP . . . N 7 11.175 33.447 67.953 1 41.73 ? C8 ANP 1413 B 1 HETATM 24 N N7 ANP . . . N 7 11.11 33.527 66.591 1 41.94 ? N7 ANP 1413 B 1 HETATM 25 C C5 ANP . . . N 7 12.372 33.444 66.129 1 41.75 ? C5 ANP 1413 B 1 HETATM 26 C C6 ANP . . . N 7 13.011 33.46 64.794 1 41.03 ? C6 ANP 1413 B 1 HETATM 27 N N6 ANP . . . N 7 12.27 33.577 63.673 1 41.11 ? N6 ANP 1413 B 1 HETATM 28 N N1 ANP . . . N 7 14.356 33.349 64.74 1 41.08 ? N1 ANP 1413 B 1 HETATM 29 C C2 ANP . . . N 7 15.112 33.229 65.851 1 41.41 ? C2 ANP 1413 B 1 HETATM 30 N N3 ANP . . . N 7 14.596 33.198 67.101 1 41.62 ? N3 ANP 1413 B 1 HETATM 31 C C4 ANP . . . N 7 13.255 33.301 67.312 1 41.7 ? C4 ANP 1413 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #