data_2J17 # _model_server_result.job_id aE0bYvbFZkJ8AFCbOsKUcA _model_server_result.datetime_utc '2024-11-28 22:50:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1199}' # _entry.id 2J17 # _exptl.entry_id 2J17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 261.168 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description O-PHOSPHOTYROSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2J17 _cell.length_a 61.661 _cell.length_b 61.661 _cell.length_c 217.562 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 47 1_555 A SG CYS 126 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 31 B CYS 47 1_555 B SG CYS 126 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OE1 GLU 57 A GLU 73 1_555 C MG MG . A MG 1197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc2 A OE2 GLU 57 A GLU 73 1_555 C MG MG . A MG 1197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc3 A OD1 ASN 77 A ASN 93 1_555 C MG MG . A MG 1197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc4 A OE1 GLU 94 A GLU 110 1_555 D MG MG . A MG 1198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc5 D MG MG . A MG 1198 1_555 J O HOH . A HOH 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc6 D MG MG . A MG 1198 1_555 J O HOH . A HOH 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc7 B OE1 GLU 57 B GLU 73 1_555 F MG MG . B MG 1197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc8 B OE2 GLU 57 B GLU 73 1_555 F MG MG . B MG 1197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc9 B ND2 ASN 77 B ASN 93 1_555 F MG MG . B MG 1197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc10 B O VAL 83 B VAL 99 7_555 H MG MG . B MG 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.09 ? metalc ? metalc11 B O PRO 84 B PRO 100 1_555 H MG MG . B MG 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc12 B O PRO 84 B PRO 100 7_555 H MG MG . B MG 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc13 B O VAL 86 B VAL 102 7_555 H MG MG . B MG 1199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc14 B OE2 GLU 118 B GLU 134 1_555 G MG MG . B MG 1198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc15 G MG MG . B MG 1198 1_555 K O HOH . B HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc16 G MG MG . B MG 1198 1_555 K O HOH . B HOH 2005 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? # _chem_comp.formula 'C9 H12 N O6 P' _chem_comp.formula_weight 261.168 _chem_comp.id PTR _chem_comp.mon_nstd_flag n _chem_comp.name O-PHOSPHOTYROSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms PHOSPHONOTYROSINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PTR sing 277 n n N H PTR sing 278 n n N H2 PTR sing 279 n n CA C PTR sing 280 n n CA CB PTR sing 281 n n CA HA PTR sing 282 n n C O PTR doub 283 n n C OXT PTR sing 284 n n OXT HXT PTR sing 285 n n CB CG PTR sing 286 n n CB HB2 PTR sing 287 n n CB HB3 PTR sing 288 n n CG CD1 PTR doub 289 n y CG CD2 PTR sing 290 n y CD1 CE1 PTR sing 291 n y CD1 HD1 PTR sing 292 n n CD2 CE2 PTR doub 293 n y CD2 HD2 PTR sing 294 n n CE1 CZ PTR doub 295 n y CE1 HE1 PTR sing 296 n n CE2 CZ PTR sing 297 n y CE2 HE2 PTR sing 298 n n CZ OH PTR sing 299 n n OH P PTR sing 300 n n P O1P PTR doub 301 n n P O2P PTR sing 302 n n P O3P PTR sing 303 n n O2P HO2P PTR sing 304 n n O3P HO3P PTR sing 305 n n # _atom_sites.entry_id 2J17 _atom_sites.fract_transf_matrix[1][1] 0.016218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1197 1197 MG MG . D 2 MG A 1 1198 1198 MG MG . E 3 PTR A 1 1199 1199 PTR PTR . F 2 MG B 1 1197 1197 MG MG . G 2 MG B 1 1198 1198 MG MG . H 2 MG B 1 1199 1199 MG MG . I 3 PTR B 1 1200 1200 PTR PTR . J 4 HOH A 1 2001 2001 HOH HOH . J 4 HOH A 2 2002 2002 HOH HOH . J 4 HOH A 3 2003 2003 HOH HOH . J 4 HOH A 4 2004 2004 HOH HOH . J 4 HOH A 5 2005 2005 HOH HOH . J 4 HOH A 6 2006 2006 HOH HOH . J 4 HOH A 7 2007 2007 HOH HOH . J 4 HOH A 8 2008 2008 HOH HOH . J 4 HOH A 9 2009 2009 HOH HOH . J 4 HOH A 10 2010 2010 HOH HOH . J 4 HOH A 11 2011 2011 HOH HOH . J 4 HOH A 12 2012 2012 HOH HOH . J 4 HOH A 13 2013 2013 HOH HOH . J 4 HOH A 14 2014 2014 HOH HOH . J 4 HOH A 15 2015 2015 HOH HOH . J 4 HOH A 16 2016 2016 HOH HOH . K 4 HOH B 1 2001 2001 HOH HOH . K 4 HOH B 2 2002 2002 HOH HOH . K 4 HOH B 3 2003 2003 HOH HOH . K 4 HOH B 4 2004 2004 HOH HOH . K 4 HOH B 5 2005 2005 HOH HOH . K 4 HOH B 6 2006 2006 HOH HOH . K 4 HOH B 7 2007 2007 HOH HOH . K 4 HOH B 8 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CG PTR . . . E 3 52.328 30.903 40.155 1 58.1 ? CG PTR 1199 A 1 HETATM 2 C CD1 PTR . . . E 3 51.753 32.114 39.763 1 58.2 ? CD1 PTR 1199 A 1 HETATM 3 C CD2 PTR . . . E 3 52.33 30.591 41.519 1 58.42 ? CD2 PTR 1199 A 1 HETATM 4 C CE1 PTR . . . E 3 51.197 32.985 40.695 1 57.21 ? CE1 PTR 1199 A 1 HETATM 5 C CE2 PTR . . . E 3 51.779 31.457 42.458 1 57.43 ? CE2 PTR 1199 A 1 HETATM 6 C CZ PTR . . . E 3 51.203 32.653 42.044 1 56.67 ? CZ PTR 1199 A 1 HETATM 7 O OH PTR . . . E 3 50.707 33.454 42.855 1 55.07 ? OH PTR 1199 A 1 HETATM 8 P P PTR . . . E 3 49.789 33.062 44.125 1 52.13 ? P PTR 1199 A 1 HETATM 9 O O1P PTR . . . E 3 48.645 32.211 43.723 1 51.63 ? O1P PTR 1199 A 1 HETATM 10 O O2P PTR . . . E 3 49.232 34.354 44.742 1 53.36 ? O2P PTR 1199 A 1 HETATM 11 O O3P PTR . . . E 3 50.669 32.341 45.157 1 52.04 ? O3P PTR 1199 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #