data_2J1D # _model_server_result.job_id JUrL5_EKwkoCgSslc9q8Ng _model_server_result.datetime_utc '2024-11-29 08:07:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3027}' # _entry.id 2J1D # _exptl.entry_id 2J1D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2J1D _cell.length_a 100.897 _cell.length_b 100.343 _cell.length_c 148.397 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 100.897 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2J1D _atom_sites.fract_transf_matrix[1][1] 0.009911 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 G 1 3026 3026 PO4 PO4 . C 3 GOL G 1 3027 3027 GOL GOL . D 4 HOH G 1 2001 2001 HOH HOH . D 4 HOH G 2 2002 2002 HOH HOH . D 4 HOH G 3 2003 2003 HOH HOH . D 4 HOH G 4 2004 2004 HOH HOH . D 4 HOH G 5 2005 2005 HOH HOH . D 4 HOH G 6 2006 2006 HOH HOH . D 4 HOH G 7 2007 2007 HOH HOH . D 4 HOH G 8 2008 2008 HOH HOH . D 4 HOH G 9 2009 2009 HOH HOH . D 4 HOH G 10 2010 2010 HOH HOH . D 4 HOH G 11 2011 2011 HOH HOH . D 4 HOH G 12 2012 2012 HOH HOH . D 4 HOH G 13 2013 2013 HOH HOH . D 4 HOH G 14 2014 2014 HOH HOH . D 4 HOH G 15 2015 2015 HOH HOH . D 4 HOH G 16 2016 2016 HOH HOH . D 4 HOH G 17 2017 2017 HOH HOH . D 4 HOH G 18 2018 2018 HOH HOH . D 4 HOH G 19 2019 2019 HOH HOH . D 4 HOH G 20 2020 2020 HOH HOH . D 4 HOH G 21 2021 2021 HOH HOH . D 4 HOH G 22 2022 2022 HOH HOH . D 4 HOH G 23 2023 2023 HOH HOH . D 4 HOH G 24 2024 2024 HOH HOH . D 4 HOH G 25 2025 2025 HOH HOH . D 4 HOH G 26 2026 2026 HOH HOH . D 4 HOH G 27 2027 2027 HOH HOH . D 4 HOH G 28 2028 2028 HOH HOH . D 4 HOH G 29 2029 2029 HOH HOH . D 4 HOH G 30 2030 2030 HOH HOH . D 4 HOH G 31 2031 2031 HOH HOH . D 4 HOH G 32 2032 2032 HOH HOH . D 4 HOH G 33 2033 2033 HOH HOH . D 4 HOH G 34 2034 2034 HOH HOH . D 4 HOH G 35 2035 2035 HOH HOH . D 4 HOH G 36 2036 2036 HOH HOH . D 4 HOH G 37 2037 2037 HOH HOH . D 4 HOH G 38 2038 2038 HOH HOH . D 4 HOH G 39 2039 2039 HOH HOH . D 4 HOH G 40 2040 2040 HOH HOH . D 4 HOH G 41 2041 2041 HOH HOH . D 4 HOH G 42 2042 2042 HOH HOH . D 4 HOH G 43 2043 2043 HOH HOH . D 4 HOH G 44 2044 2044 HOH HOH . D 4 HOH G 45 2045 2045 HOH HOH . D 4 HOH G 46 2046 2046 HOH HOH . D 4 HOH G 47 2047 2047 HOH HOH . D 4 HOH G 48 2048 2048 HOH HOH . D 4 HOH G 49 2049 2049 HOH HOH . D 4 HOH G 50 2050 2050 HOH HOH . D 4 HOH G 51 2051 2051 HOH HOH . D 4 HOH G 52 2052 2052 HOH HOH . D 4 HOH G 53 2053 2053 HOH HOH . D 4 HOH G 54 2054 2054 HOH HOH . D 4 HOH G 55 2055 2055 HOH HOH . D 4 HOH G 56 2056 2056 HOH HOH . D 4 HOH G 57 2057 2057 HOH HOH . D 4 HOH G 58 2058 2058 HOH HOH . D 4 HOH G 59 2059 2059 HOH HOH . D 4 HOH G 60 2060 2060 HOH HOH . D 4 HOH G 61 2061 2061 HOH HOH . D 4 HOH G 62 2062 2062 HOH HOH . D 4 HOH G 63 2063 2063 HOH HOH . D 4 HOH G 64 2064 2064 HOH HOH . D 4 HOH G 65 2065 2065 HOH HOH . D 4 HOH G 66 2066 2066 HOH HOH . D 4 HOH G 67 2067 2067 HOH HOH . D 4 HOH G 68 2068 2068 HOH HOH . D 4 HOH G 69 2069 2069 HOH HOH . D 4 HOH G 70 2070 2070 HOH HOH . D 4 HOH G 71 2071 2071 HOH HOH . D 4 HOH G 72 2072 2072 HOH HOH . D 4 HOH G 73 2073 2073 HOH HOH . D 4 HOH G 74 2074 2074 HOH HOH . D 4 HOH G 75 2075 2075 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 46.987 14.113 42.014 1 100.43 ? C1 GOL 3027 G 1 HETATM 2 O O1 GOL . . . C 3 46.686 15.397 41.482 1 100.01 ? O1 GOL 3027 G 1 HETATM 3 C C2 GOL . . . C 3 46.974 12.946 41.013 1 100.54 ? C2 GOL 3027 G 1 HETATM 4 O O2 GOL . . . C 3 45.788 12.193 41.171 1 100.61 ? O2 GOL 3027 G 1 HETATM 5 C C3 GOL . . . C 3 47.133 13.402 39.56 1 100.59 ? C3 GOL 3027 G 1 HETATM 6 O O3 GOL . . . C 3 47.332 12.32 38.671 1 99.99 ? O3 GOL 3027 G 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #