data_2J2P # _model_server_result.job_id CaLv8SfiKatqybCDRKlNfw _model_server_result.datetime_utc '2024-11-22 23:09:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1292}' # _entry.id 2J2P # _exptl.entry_id 2J2P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2J2P _cell.length_a 96.4 _cell.length_b 96.4 _cell.length_c 140.29 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS trimeric 3 author_and_software_defined_assembly 1 PQS trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,I,J,K,L,M,N,O,P,Q,R,CA,DA,EA 1 1 D,E,F,H,S,T,U,V,W,X,Y,Z,AA,BA,FA,GA,HA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 M N N ? 3 R N N ? 3 S N N ? 3 X N N ? 3 BA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n G NAG 1 G 1 NAG B 1292 NAG 2 n G NAG 2 G 2 NAG B 1293 NAG 2 n H NAG 1 H 1 NAG E 1293 NAG 2 n H NAG 2 H 2 NAG E 1294 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 80 1_555 A SG CYS 38 A CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 162 A CYS 232 1_555 A SG CYS 175 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 3 B CYS 73 1_555 B SG CYS 31 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 B SG CYS 10 B CYS 80 1_555 B SG CYS 38 B CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 162 B CYS 232 1_555 B SG CYS 175 B CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf6 C SG CYS 10 C CYS 80 1_555 C SG CYS 38 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 C SG CYS 162 C CYS 232 1_555 C SG CYS 175 C CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf8 D SG CYS 10 D CYS 80 1_555 D SG CYS 38 D CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf9 D SG CYS 162 D CYS 232 1_555 D SG CYS 175 D CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf10 E SG CYS 3 E CYS 73 1_555 E SG CYS 31 E CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf11 E SG CYS 10 E CYS 80 1_555 E SG CYS 38 E CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 E SG CYS 162 E CYS 232 1_555 E SG CYS 175 E CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 F SG CYS 10 F CYS 80 1_555 F SG CYS 38 F CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf14 F SG CYS 162 F CYS 232 1_555 F SG CYS 175 F CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 B ND2 ASN 145 B ASN 215 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 E ND2 ASN 145 E ASN 215 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? covale ? covale3 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? metalc ? metalc1 A OD1 ASP 154 A ASP 224 1_555 I CA CA . A CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc2 A OD2 ASP 154 A ASP 224 1_555 I CA CA . A CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc3 A OD1 ASP 156 A ASP 226 1_555 I CA CA . A CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc4 A O ASP 156 A ASP 226 1_555 I CA CA . A CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.382 ? metalc ? metalc5 A O ASN 158 A ASN 228 1_555 I CA CA . A CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc6 A O GLY 160 A GLY 230 1_555 I CA CA . A CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? metalc ? metalc7 B OD2 ASP 154 B ASP 224 1_555 M CA CA . B CA 1291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc8 B OD1 ASP 154 B ASP 224 1_555 M CA CA . B CA 1291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc9 B OD1 ASP 156 B ASP 226 1_555 M CA CA . B CA 1291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc10 B O ASN 158 B ASN 228 1_555 M CA CA . B CA 1291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc11 B O GLY 160 B GLY 230 1_555 M CA CA . B CA 1291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc12 C OD1 ASP 154 C ASP 224 1_555 R CA CA . C CA 1292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc13 C OD2 ASP 154 C ASP 224 1_555 R CA CA . C CA 1292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc14 C OD1 ASP 156 C ASP 226 1_555 R CA CA . C CA 1292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc15 C O ASN 158 C ASN 228 1_555 R CA CA . C CA 1292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc16 C O GLY 160 C GLY 230 1_555 R CA CA . C CA 1292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc17 D OD2 ASP 154 D ASP 224 1_555 S CA CA . D CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc18 D OD1 ASP 154 D ASP 224 1_555 S CA CA . D CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc19 D OD2 ASP 156 D ASP 226 1_555 S CA CA . D CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc20 D O ASN 158 D ASN 228 1_555 S CA CA . D CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc21 D O GLY 160 D GLY 230 1_555 S CA CA . D CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.077 ? metalc ? metalc22 E OD1 ASP 154 E ASP 224 1_555 X CA CA . E CA 1292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc23 E OD2 ASP 154 E ASP 224 1_555 X CA CA . E CA 1292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc24 E OD1 ASP 156 E ASP 226 1_555 X CA CA . E CA 1292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc25 E O ASN 158 E ASN 228 1_555 X CA CA . E CA 1292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc26 E O GLY 160 E GLY 230 1_555 X CA CA . E CA 1292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc27 F OD2 ASP 154 F ASP 224 1_555 BA CA CA . F CA 1292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc28 F OD1 ASP 154 F ASP 224 1_555 BA CA CA . F CA 1292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc29 F OD1 ASP 156 F ASP 226 1_555 BA CA CA . F CA 1292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc30 F O ASN 158 F ASN 228 1_555 BA CA CA . F CA 1292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc31 F O GLY 160 F GLY 230 1_555 BA CA CA . F CA 1292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2J2P _atom_sites.fract_transf_matrix[1][1] 0.010373 _atom_sites.fract_transf_matrix[1][2] 0.005989 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007128 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 CA A 1 1289 1289 CA CA . J 4 SC2 A 1 1290 1290 SC2 SC2 . K 4 SC2 B 1 1289 1289 SC2 SC2 . L 4 SC2 B 1 1290 1290 SC2 SC2 . M 3 CA B 1 1291 1291 CA CA . N 4 SC2 B 1 1294 1294 SC2 SC2 . O 4 SC2 C 1 1289 1289 SC2 SC2 . P 4 SC2 C 1 1290 1290 SC2 SC2 . Q 5 BMA C 1 1291 1291 BMA BMA . R 3 CA C 1 1292 1292 CA CA . S 3 CA D 1 1289 1289 CA CA . T 4 SC2 D 1 1290 1290 SC2 SC2 . U 4 SC2 E 1 1289 1289 SC2 SC2 . V 4 SC2 E 1 1290 1290 SC2 SC2 . W 4 SC2 E 1 1291 1291 SC2 SC2 . X 3 CA E 1 1292 1292 CA CA . Y 4 SC2 F 1 1289 1289 SC2 SC2 . Z 4 SC2 F 1 1290 1290 SC2 SC2 . AA 4 SC2 F 1 1291 1291 SC2 SC2 . BA 3 CA F 1 1292 1292 CA CA . CA 6 HOH A 1 2001 2001 HOH HOH . CA 6 HOH A 2 2002 2002 HOH HOH . CA 6 HOH A 3 2003 2003 HOH HOH . CA 6 HOH A 4 2004 2004 HOH HOH . CA 6 HOH A 5 2005 2005 HOH HOH . CA 6 HOH A 6 2006 2006 HOH HOH . CA 6 HOH A 7 2007 2007 HOH HOH . CA 6 HOH A 8 2008 2008 HOH HOH . CA 6 HOH A 9 2009 2009 HOH HOH . DA 6 HOH B 1 2001 2001 HOH HOH . DA 6 HOH B 2 2002 2002 HOH HOH . DA 6 HOH B 3 2003 2003 HOH HOH . DA 6 HOH B 4 2004 2004 HOH HOH . DA 6 HOH B 5 2005 2005 HOH HOH . DA 6 HOH B 6 2006 2006 HOH HOH . DA 6 HOH B 7 2007 2007 HOH HOH . DA 6 HOH B 8 2008 2008 HOH HOH . DA 6 HOH B 9 2009 2009 HOH HOH . DA 6 HOH B 10 2010 2010 HOH HOH . DA 6 HOH B 11 2011 2011 HOH HOH . DA 6 HOH B 12 2012 2012 HOH HOH . DA 6 HOH B 13 2013 2013 HOH HOH . DA 6 HOH B 14 2014 2014 HOH HOH . EA 6 HOH C 1 2001 2001 HOH HOH . EA 6 HOH C 2 2002 2002 HOH HOH . EA 6 HOH C 3 2003 2003 HOH HOH . EA 6 HOH C 4 2004 2004 HOH HOH . EA 6 HOH C 5 2005 2005 HOH HOH . EA 6 HOH C 6 2006 2006 HOH HOH . EA 6 HOH C 7 2007 2007 HOH HOH . EA 6 HOH C 8 2008 2008 HOH HOH . EA 6 HOH C 9 2009 2009 HOH HOH . EA 6 HOH C 10 2010 2010 HOH HOH . EA 6 HOH C 11 2011 2011 HOH HOH . EA 6 HOH C 12 2012 2012 HOH HOH . EA 6 HOH C 13 2013 2013 HOH HOH . EA 6 HOH C 14 2014 2014 HOH HOH . EA 6 HOH C 15 2015 2015 HOH HOH . EA 6 HOH C 16 2016 2016 HOH HOH . FA 6 HOH D 1 2001 2001 HOH HOH . FA 6 HOH D 2 2002 2002 HOH HOH . FA 6 HOH D 3 2003 2003 HOH HOH . FA 6 HOH D 4 2004 2004 HOH HOH . FA 6 HOH D 5 2005 2005 HOH HOH . FA 6 HOH D 6 2006 2006 HOH HOH . FA 6 HOH D 7 2007 2007 HOH HOH . FA 6 HOH D 8 2008 2008 HOH HOH . FA 6 HOH D 9 2009 2009 HOH HOH . GA 6 HOH E 1 2001 2001 HOH HOH . GA 6 HOH E 2 2002 2002 HOH HOH . GA 6 HOH E 3 2003 2003 HOH HOH . GA 6 HOH E 4 2004 2004 HOH HOH . GA 6 HOH E 5 2005 2005 HOH HOH . GA 6 HOH E 6 2006 2006 HOH HOH . GA 6 HOH E 7 2007 2007 HOH HOH . GA 6 HOH E 8 2008 2008 HOH HOH . GA 6 HOH E 9 2009 2009 HOH HOH . GA 6 HOH E 10 2010 2010 HOH HOH . GA 6 HOH E 11 2011 2011 HOH HOH . GA 6 HOH E 12 2012 2012 HOH HOH . GA 6 HOH E 13 2013 2013 HOH HOH . GA 6 HOH E 14 2014 2014 HOH HOH . GA 6 HOH E 15 2015 2015 HOH HOH . GA 6 HOH E 16 2016 2016 HOH HOH . GA 6 HOH E 17 2017 2017 HOH HOH . GA 6 HOH E 18 2018 2018 HOH HOH . HA 6 HOH F 1 2001 2001 HOH HOH . HA 6 HOH F 2 2002 2002 HOH HOH . HA 6 HOH F 3 2003 2003 HOH HOH . HA 6 HOH F 4 2004 2004 HOH HOH . HA 6 HOH F 5 2005 2005 HOH HOH . HA 6 HOH F 6 2006 2006 HOH HOH . HA 6 HOH F 7 2007 2007 HOH HOH . HA 6 HOH F 8 2008 2008 HOH HOH . HA 6 HOH F 9 2009 2009 HOH HOH . HA 6 HOH F 10 2010 2010 HOH HOH . HA 6 HOH F 11 2011 2011 HOH HOH . HA 6 HOH F 12 2012 2012 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id R _atom_site.label_entity_id 3 _atom_site.Cartn_x 44.73 _atom_site.Cartn_y 51.233 _atom_site.Cartn_z -12.627 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1292 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #