data_2J3I # _model_server_result.job_id VkLcWyPCgEWGK9i2mbEC-w _model_server_result.datetime_utc '2024-11-28 07:34:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j3i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":350}' # _entry.id 2J3I # _exptl.entry_id 2J3I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2J3I _cell.length_a 49.15 _cell.length_b 122.66 _cell.length_c 147.94 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id O2X _struct_conn.ptnr1_label_comp_id NAP _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id NAP _struct_conn.ptnr1_auth_seq_id 351 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id GLY _struct_conn.ptnr2_label_seq_id 188 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id GLY _struct_conn.ptnr2_auth_seq_id 1188 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.021 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # _atom_sites.entry_id 2J3I _atom_sites.fract_transf_matrix[1][1] 0.020346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 350 350 NAP NAP . D 2 NAP B 1 351 351 NAP NAP . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . E 3 HOH A 8 2008 2008 HOH HOH . E 3 HOH A 9 2009 2009 HOH HOH . E 3 HOH A 10 2010 2010 HOH HOH . E 3 HOH A 11 2011 2011 HOH HOH . E 3 HOH A 12 2012 2012 HOH HOH . E 3 HOH A 13 2013 2013 HOH HOH . E 3 HOH A 14 2014 2014 HOH HOH . E 3 HOH A 15 2015 2015 HOH HOH . E 3 HOH A 16 2016 2016 HOH HOH . E 3 HOH A 17 2017 2017 HOH HOH . E 3 HOH A 18 2018 2018 HOH HOH . E 3 HOH A 19 2019 2019 HOH HOH . E 3 HOH A 20 2020 2020 HOH HOH . E 3 HOH A 21 2021 2021 HOH HOH . E 3 HOH A 22 2022 2022 HOH HOH . E 3 HOH A 23 2023 2023 HOH HOH . E 3 HOH A 24 2024 2024 HOH HOH . E 3 HOH A 25 2025 2025 HOH HOH . E 3 HOH A 26 2026 2026 HOH HOH . E 3 HOH A 27 2027 2027 HOH HOH . E 3 HOH A 28 2028 2028 HOH HOH . E 3 HOH A 29 2029 2029 HOH HOH . E 3 HOH A 30 2030 2030 HOH HOH . E 3 HOH A 31 2031 2031 HOH HOH . E 3 HOH A 32 2032 2032 HOH HOH . E 3 HOH A 33 2033 2033 HOH HOH . E 3 HOH A 34 2034 2034 HOH HOH . E 3 HOH A 35 2035 2035 HOH HOH . E 3 HOH A 36 2036 2036 HOH HOH . E 3 HOH A 37 2037 2037 HOH HOH . E 3 HOH A 38 2038 2038 HOH HOH . E 3 HOH A 39 2039 2039 HOH HOH . E 3 HOH A 40 2040 2040 HOH HOH . E 3 HOH A 41 2041 2041 HOH HOH . E 3 HOH A 42 2042 2042 HOH HOH . E 3 HOH A 43 2043 2043 HOH HOH . E 3 HOH A 44 2044 2044 HOH HOH . E 3 HOH A 45 2045 2045 HOH HOH . E 3 HOH A 46 2046 2046 HOH HOH . E 3 HOH A 47 2047 2047 HOH HOH . E 3 HOH A 48 2048 2048 HOH HOH . E 3 HOH A 49 2049 2049 HOH HOH . E 3 HOH A 50 2050 2050 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . F 3 HOH B 5 2005 2005 HOH HOH . F 3 HOH B 6 2006 2006 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . F 3 HOH B 8 2008 2008 HOH HOH . F 3 HOH B 9 2009 2009 HOH HOH . F 3 HOH B 10 2010 2010 HOH HOH . F 3 HOH B 11 2011 2011 HOH HOH . F 3 HOH B 12 2012 2012 HOH HOH . F 3 HOH B 13 2013 2013 HOH HOH . F 3 HOH B 14 2014 2014 HOH HOH . F 3 HOH B 15 2015 2015 HOH HOH . F 3 HOH B 16 2016 2016 HOH HOH . F 3 HOH B 17 2017 2017 HOH HOH . F 3 HOH B 18 2018 2018 HOH HOH . F 3 HOH B 19 2019 2019 HOH HOH . F 3 HOH B 20 2020 2020 HOH HOH . F 3 HOH B 21 2021 2021 HOH HOH . F 3 HOH B 22 2022 2022 HOH HOH . F 3 HOH B 23 2023 2023 HOH HOH . F 3 HOH B 24 2024 2024 HOH HOH . F 3 HOH B 25 2025 2025 HOH HOH . F 3 HOH B 26 2026 2026 HOH HOH . F 3 HOH B 27 2027 2027 HOH HOH . F 3 HOH B 28 2028 2028 HOH HOH . F 3 HOH B 29 2029 2029 HOH HOH . F 3 HOH B 30 2030 2030 HOH HOH . F 3 HOH B 31 2031 2031 HOH HOH . F 3 HOH B 32 2032 2032 HOH HOH . F 3 HOH B 33 2033 2033 HOH HOH . F 3 HOH B 34 2034 2034 HOH HOH . F 3 HOH B 35 2035 2035 HOH HOH . F 3 HOH B 36 2036 2036 HOH HOH . F 3 HOH B 37 2037 2037 HOH HOH . F 3 HOH B 38 2038 2038 HOH HOH . F 3 HOH B 39 2039 2039 HOH HOH . F 3 HOH B 40 2040 2040 HOH HOH . F 3 HOH B 41 2041 2041 HOH HOH . F 3 HOH B 42 2042 2042 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 30.007 9.33 89.464 1 72.56 ? PA NAP 350 A 1 HETATM 2 O O1A NAP . . . C 2 29.431 9.851 90.732 1 72.1 ? O1A NAP 350 A 1 HETATM 3 O O2A NAP . . . C 2 31.417 8.862 89.521 1 71.02 ? O2A NAP 350 A 1 HETATM 4 O O5B NAP . . . C 2 29.092 8.035 88.935 1 77.21 ? O5B NAP 350 A 1 HETATM 5 C C5B NAP . . . C 2 27.764 7.879 89.516 1 78.36 ? C5B NAP 350 A 1 HETATM 6 C C4B NAP . . . C 2 26.718 8.94 89.133 1 70.85 ? C4B NAP 350 A 1 HETATM 7 O O4B NAP . . . C 2 25.845 8.324 88.173 1 77.1 ? O4B NAP 350 A 1 HETATM 8 C C3B NAP . . . C 2 25.776 9.374 90.256 1 74.2 ? C3B NAP 350 A 1 HETATM 9 O O3B NAP . . . C 2 26.245 10.555 90.918 1 78.61 ? O3B NAP 350 A 1 HETATM 10 C C2B NAP . . . C 2 24.402 9.583 89.592 1 69.17 ? C2B NAP 350 A 1 HETATM 11 O O2B NAP . . . C 2 23.896 10.961 89.645 1 65.7 ? O2B NAP 350 A 1 HETATM 12 C C1B NAP . . . C 2 24.618 9.085 88.157 1 65.35 ? C1B NAP 350 A 1 HETATM 13 N N9A NAP . . . C 2 23.516 8.243 87.611 1 55.86 ? N9A NAP 350 A 1 HETATM 14 C C8A NAP . . . C 2 23.355 6.916 87.765 1 48.92 ? C8A NAP 350 A 1 HETATM 15 N N7A NAP . . . C 2 22.328 6.451 87.045 1 42.12 ? N7A NAP 350 A 1 HETATM 16 C C5A NAP . . . C 2 21.867 7.537 86.447 1 39.01 ? C5A NAP 350 A 1 HETATM 17 C C6A NAP . . . C 2 20.797 7.569 85.566 1 33.38 ? C6A NAP 350 A 1 HETATM 18 N N6A NAP . . . C 2 20.109 6.474 85.253 1 28.83 ? N6A NAP 350 A 1 HETATM 19 N N1A NAP . . . C 2 20.503 8.777 85.051 1 31.5 ? N1A NAP 350 A 1 HETATM 20 C C2A NAP . . . C 2 21.197 9.875 85.376 1 33.88 ? C2A NAP 350 A 1 HETATM 21 N N3A NAP . . . C 2 22.217 9.842 86.226 1 38.01 ? N3A NAP 350 A 1 HETATM 22 C C4A NAP . . . C 2 22.574 8.667 86.779 1 43.28 ? C4A NAP 350 A 1 HETATM 23 O O3 NAP . . . C 2 29.906 10.611 88.415 1 88.91 ? O3 NAP 350 A 1 HETATM 24 P PN NAP . . . C 2 30.365 10.853 86.774 1 77.78 ? PN NAP 350 A 1 HETATM 25 O O1N NAP . . . C 2 30.714 12.295 86.68 1 69.34 ? O1N NAP 350 A 1 HETATM 26 O O2N NAP . . . C 2 29.175 10.465 85.97 1 70.1 ? O2N NAP 350 A 1 HETATM 27 O O5D NAP . . . C 2 31.695 9.989 86.104 1 70.07 ? O5D NAP 350 A 1 HETATM 28 C C5D NAP . . . C 2 31.571 8.751 85.279 1 69.32 ? C5D NAP 350 A 1 HETATM 29 C C4D NAP . . . C 2 30.598 8.364 84.093 1 66.65 ? C4D NAP 350 A 1 HETATM 30 O O4D NAP . . . C 2 30.908 8.658 82.688 1 70.38 ? O4D NAP 350 A 1 HETATM 31 C C3D NAP . . . C 2 30.375 6.876 83.892 1 71.91 ? C3D NAP 350 A 1 HETATM 32 O O3D NAP . . . C 2 29.232 6.561 83.092 1 79.4 ? O3D NAP 350 A 1 HETATM 33 C C2D NAP . . . C 2 31.639 6.474 83.155 1 80.01 ? C2D NAP 350 A 1 HETATM 34 O O2D NAP . . . C 2 31.59 5.207 82.5 1 77.13 ? O2D NAP 350 A 1 HETATM 35 C C1D NAP . . . C 2 31.83 7.641 82.211 1 78.01 ? C1D NAP 350 A 1 HETATM 36 N N1N NAP . . . C 2 33.258 8.036 82.079 1 70.08 ? N1N NAP 350 A 1 HETATM 37 C C2N NAP . . . C 2 33.696 8.562 80.853 1 65.24 ? C2N NAP 350 A 1 HETATM 38 C C3N NAP . . . C 2 35.04 8.886 80.648 1 63.36 ? C3N NAP 350 A 1 HETATM 39 C C7N NAP . . . C 2 35.536 9.258 79.236 1 70.51 ? C7N NAP 350 A 1 HETATM 40 O O7N NAP . . . C 2 36.523 8.725 78.73 1 66.3 ? O7N NAP 350 A 1 HETATM 41 N N7N NAP . . . C 2 34.763 10.108 78.566 1 70.77 ? N7N NAP 350 A 1 HETATM 42 C C4N NAP . . . C 2 35.946 8.704 81.698 1 62.42 ? C4N NAP 350 A 1 HETATM 43 C C5N NAP . . . C 2 35.53 8.195 82.931 1 64.62 ? C5N NAP 350 A 1 HETATM 44 C C6N NAP . . . C 2 34.192 7.856 83.124 1 66.44 ? C6N NAP 350 A 1 HETATM 45 P P2B NAP . . . C 2 22.434 11.289 90.09 1 73.82 ? P2B NAP 350 A 1 HETATM 46 O O1X NAP . . . C 2 22.405 12.766 89.968 1 73.98 ? O1X NAP 350 A 1 HETATM 47 O O2X NAP . . . C 2 21.365 10.706 89.234 1 73.21 ? O2X NAP 350 A 1 HETATM 48 O O3X NAP . . . C 2 22.287 10.886 91.51 1 75.53 ? O3X NAP 350 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #