data_2J3I # _model_server_result.job_id uovSRgNnF02Y3GEpCMoKdQ _model_server_result.datetime_utc '2024-11-28 08:09:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j3i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":351}' # _entry.id 2J3I # _exptl.entry_id 2J3I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2J3I _cell.length_a 49.15 _cell.length_b 122.66 _cell.length_c 147.94 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id O2X _struct_conn.ptnr1_label_comp_id NAP _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id NAP _struct_conn.ptnr1_auth_seq_id 351 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id GLY _struct_conn.ptnr2_label_seq_id 188 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id GLY _struct_conn.ptnr2_auth_seq_id 1188 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.021 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # _atom_sites.entry_id 2J3I _atom_sites.fract_transf_matrix[1][1] 0.020346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 350 350 NAP NAP . D 2 NAP B 1 351 351 NAP NAP . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . E 3 HOH A 8 2008 2008 HOH HOH . E 3 HOH A 9 2009 2009 HOH HOH . E 3 HOH A 10 2010 2010 HOH HOH . E 3 HOH A 11 2011 2011 HOH HOH . E 3 HOH A 12 2012 2012 HOH HOH . E 3 HOH A 13 2013 2013 HOH HOH . E 3 HOH A 14 2014 2014 HOH HOH . E 3 HOH A 15 2015 2015 HOH HOH . E 3 HOH A 16 2016 2016 HOH HOH . E 3 HOH A 17 2017 2017 HOH HOH . E 3 HOH A 18 2018 2018 HOH HOH . E 3 HOH A 19 2019 2019 HOH HOH . E 3 HOH A 20 2020 2020 HOH HOH . E 3 HOH A 21 2021 2021 HOH HOH . E 3 HOH A 22 2022 2022 HOH HOH . E 3 HOH A 23 2023 2023 HOH HOH . E 3 HOH A 24 2024 2024 HOH HOH . E 3 HOH A 25 2025 2025 HOH HOH . E 3 HOH A 26 2026 2026 HOH HOH . E 3 HOH A 27 2027 2027 HOH HOH . E 3 HOH A 28 2028 2028 HOH HOH . E 3 HOH A 29 2029 2029 HOH HOH . E 3 HOH A 30 2030 2030 HOH HOH . E 3 HOH A 31 2031 2031 HOH HOH . E 3 HOH A 32 2032 2032 HOH HOH . E 3 HOH A 33 2033 2033 HOH HOH . E 3 HOH A 34 2034 2034 HOH HOH . E 3 HOH A 35 2035 2035 HOH HOH . E 3 HOH A 36 2036 2036 HOH HOH . E 3 HOH A 37 2037 2037 HOH HOH . E 3 HOH A 38 2038 2038 HOH HOH . E 3 HOH A 39 2039 2039 HOH HOH . E 3 HOH A 40 2040 2040 HOH HOH . E 3 HOH A 41 2041 2041 HOH HOH . E 3 HOH A 42 2042 2042 HOH HOH . E 3 HOH A 43 2043 2043 HOH HOH . E 3 HOH A 44 2044 2044 HOH HOH . E 3 HOH A 45 2045 2045 HOH HOH . E 3 HOH A 46 2046 2046 HOH HOH . E 3 HOH A 47 2047 2047 HOH HOH . E 3 HOH A 48 2048 2048 HOH HOH . E 3 HOH A 49 2049 2049 HOH HOH . E 3 HOH A 50 2050 2050 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . F 3 HOH B 5 2005 2005 HOH HOH . F 3 HOH B 6 2006 2006 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . F 3 HOH B 8 2008 2008 HOH HOH . F 3 HOH B 9 2009 2009 HOH HOH . F 3 HOH B 10 2010 2010 HOH HOH . F 3 HOH B 11 2011 2011 HOH HOH . F 3 HOH B 12 2012 2012 HOH HOH . F 3 HOH B 13 2013 2013 HOH HOH . F 3 HOH B 14 2014 2014 HOH HOH . F 3 HOH B 15 2015 2015 HOH HOH . F 3 HOH B 16 2016 2016 HOH HOH . F 3 HOH B 17 2017 2017 HOH HOH . F 3 HOH B 18 2018 2018 HOH HOH . F 3 HOH B 19 2019 2019 HOH HOH . F 3 HOH B 20 2020 2020 HOH HOH . F 3 HOH B 21 2021 2021 HOH HOH . F 3 HOH B 22 2022 2022 HOH HOH . F 3 HOH B 23 2023 2023 HOH HOH . F 3 HOH B 24 2024 2024 HOH HOH . F 3 HOH B 25 2025 2025 HOH HOH . F 3 HOH B 26 2026 2026 HOH HOH . F 3 HOH B 27 2027 2027 HOH HOH . F 3 HOH B 28 2028 2028 HOH HOH . F 3 HOH B 29 2029 2029 HOH HOH . F 3 HOH B 30 2030 2030 HOH HOH . F 3 HOH B 31 2031 2031 HOH HOH . F 3 HOH B 32 2032 2032 HOH HOH . F 3 HOH B 33 2033 2033 HOH HOH . F 3 HOH B 34 2034 2034 HOH HOH . F 3 HOH B 35 2035 2035 HOH HOH . F 3 HOH B 36 2036 2036 HOH HOH . F 3 HOH B 37 2037 2037 HOH HOH . F 3 HOH B 38 2038 2038 HOH HOH . F 3 HOH B 39 2039 2039 HOH HOH . F 3 HOH B 40 2040 2040 HOH HOH . F 3 HOH B 41 2041 2041 HOH HOH . F 3 HOH B 42 2042 2042 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . D 2 17.039 9.907 47.083 1 89.1 ? PA NAP 351 B 1 HETATM 2 O O1A NAP . . . D 2 17.541 8.78 46.253 1 69.51 ? O1A NAP 351 B 1 HETATM 3 O O2A NAP . . . D 2 17.613 10.031 48.452 1 79.23 ? O2A NAP 351 B 1 HETATM 4 O O5B NAP . . . D 2 15.371 9.894 47.182 1 71.2 ? O5B NAP 351 B 1 HETATM 5 C C5B NAP . . . D 2 14.615 8.755 46.718 1 67.18 ? C5B NAP 351 B 1 HETATM 6 C C4B NAP . . . D 2 15.118 7.439 47.299 1 72.76 ? C4B NAP 351 B 1 HETATM 7 O O4B NAP . . . D 2 14.628 7.106 48.605 1 76.69 ? O4B NAP 351 B 1 HETATM 8 C C3B NAP . . . D 2 14.753 6.268 46.437 1 66.99 ? C3B NAP 351 B 1 HETATM 9 O O3B NAP . . . D 2 15.762 6.051 45.443 1 65.07 ? O3B NAP 351 B 1 HETATM 10 C C2B NAP . . . D 2 14.558 5.116 47.425 1 71.65 ? C2B NAP 351 B 1 HETATM 11 O O2B NAP . . . D 2 15.461 4.047 47.08 1 59.44 ? O2B NAP 351 B 1 HETATM 12 C C1B NAP . . . D 2 14.831 5.721 48.801 1 74.67 ? C1B NAP 351 B 1 HETATM 13 N N9A NAP . . . D 2 13.927 5.294 49.903 1 81.2 ? N9A NAP 351 B 1 HETATM 14 C C8A NAP . . . D 2 12.596 5.472 49.983 1 78.13 ? C8A NAP 351 B 1 HETATM 15 N N7A NAP . . . D 2 12.109 5.065 51.158 1 75.61 ? N7A NAP 351 B 1 HETATM 16 C C5A NAP . . . D 2 13.185 4.625 51.789 1 74.79 ? C5A NAP 351 B 1 HETATM 17 C C6A NAP . . . D 2 13.187 4.073 53.062 1 73.83 ? C6A NAP 351 B 1 HETATM 18 N N6A NAP . . . D 2 12.087 3.968 53.796 1 73.83 ? N6A NAP 351 B 1 HETATM 19 N N1A NAP . . . D 2 14.388 3.662 53.517 1 75.12 ? N1A NAP 351 B 1 HETATM 20 C C2A NAP . . . D 2 15.501 3.785 52.789 1 75.24 ? C2A NAP 351 B 1 HETATM 21 N N3A NAP . . . D 2 15.489 4.317 51.566 1 76.17 ? N3A NAP 351 B 1 HETATM 22 C C4A NAP . . . D 2 14.33 4.751 51.039 1 77 ? C4A NAP 351 B 1 HETATM 23 O O3 NAP . . . D 2 17.406 11.279 46.267 1 69.35 ? O3 NAP 351 B 1 HETATM 24 P PN NAP . . . D 2 18.198 12.733 46.475 1 71.9 ? PN NAP 351 B 1 HETATM 25 O O1N NAP . . . D 2 19.648 12.417 46.542 1 77.9 ? O1N NAP 351 B 1 HETATM 26 O O2N NAP . . . D 2 17.698 13.604 45.376 1 70.19 ? O2N NAP 351 B 1 HETATM 27 O O5D NAP . . . D 2 17.814 13.576 47.852 1 80.19 ? O5D NAP 351 B 1 HETATM 28 C C5D NAP . . . D 2 18.615 13.483 49.083 1 80.23 ? C5D NAP 351 B 1 HETATM 29 C C4D NAP . . . D 2 18.004 13.099 50.469 1 76.81 ? C4D NAP 351 B 1 HETATM 30 O O4D NAP . . . D 2 18.733 13.67 51.602 1 77.13 ? O4D NAP 351 B 1 HETATM 31 C C3D NAP . . . D 2 16.624 13.623 50.827 1 74.55 ? C3D NAP 351 B 1 HETATM 32 O O3D NAP . . . D 2 16.039 12.91 51.926 1 64.16 ? O3D NAP 351 B 1 HETATM 33 C C2D NAP . . . D 2 16.845 15.083 51.177 1 68.34 ? C2D NAP 351 B 1 HETATM 34 O O2D NAP . . . D 2 15.785 15.73 51.884 1 76.31 ? O2D NAP 351 B 1 HETATM 35 C C1D NAP . . . D 2 18.156 14.974 51.927 1 61.3 ? C1D NAP 351 B 1 HETATM 36 N N1N NAP . . . D 2 19 16.158 51.643 1 54.73 ? N1N NAP 351 B 1 HETATM 37 C C2N NAP . . . D 2 19.637 16.779 52.723 1 56.61 ? C2N NAP 351 B 1 HETATM 38 C C3N NAP . . . D 2 20.389 17.928 52.515 1 49.51 ? C3N NAP 351 B 1 HETATM 39 C C7N NAP . . . D 2 20.95 18.693 53.724 1 46.48 ? C7N NAP 351 B 1 HETATM 40 O O7N NAP . . . D 2 21.16 18.126 54.796 1 40.45 ? O7N NAP 351 B 1 HETATM 41 N N7N NAP . . . D 2 21.217 19.982 53.517 1 41.21 ? N7N NAP 351 B 1 HETATM 42 C C4N NAP . . . D 2 20.505 18.439 51.219 1 49.69 ? C4N NAP 351 B 1 HETATM 43 C C5N NAP . . . D 2 19.883 17.822 50.134 1 51.31 ? C5N NAP 351 B 1 HETATM 44 C C6N NAP . . . D 2 19.126 16.679 50.345 1 56.01 ? C6N NAP 351 B 1 HETATM 45 P P2B NAP . . . D 2 15.89 2.639 47.618 1 64.9 ? P2B NAP 351 B 1 HETATM 46 O O1X NAP . . . D 2 14.58 2.013 47.978 1 62.88 ? O1X NAP 351 B 1 HETATM 47 O O2X NAP . . . D 2 16.454 1.96 46.435 1 67.1 ? O2X NAP 351 B 1 HETATM 48 O O3X NAP . . . D 2 16.86 2.65 48.738 1 66.46 ? O3X NAP 351 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #