data_2J3J # _model_server_result.job_id IiLR2ByfuQDV83GTyiPjVQ _model_server_result.datetime_utc '2024-10-19 19:51:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j3j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2346}' # _entry.id 2J3J # _exptl.entry_id 2J3J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2J3J _cell.length_a 49.04 _cell.length_b 122.54 _cell.length_c 147.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J3J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 257 n n PA O2A NAP sing 258 n n PA O5B NAP sing 259 n n PA O3 NAP sing 260 n n O2A HOA2 NAP sing 261 n n O5B C5B NAP sing 262 n n C5B C4B NAP sing 263 n n C5B H51A NAP sing 264 n n C5B H52A NAP sing 265 n n C4B O4B NAP sing 266 n n C4B C3B NAP sing 267 n n C4B H4B NAP sing 268 n n O4B C1B NAP sing 269 n n C3B O3B NAP sing 270 n n C3B C2B NAP sing 271 n n C3B H3B NAP sing 272 n n O3B HO3A NAP sing 273 n n C2B O2B NAP sing 274 n n C2B C1B NAP sing 275 n n C2B H2B NAP sing 276 n n O2B P2B NAP sing 277 n n C1B N9A NAP sing 278 n n C1B H1B NAP sing 279 n n N9A C8A NAP sing 280 n y N9A C4A NAP sing 281 n y C8A N7A NAP doub 282 n y C8A H8A NAP sing 283 n n N7A C5A NAP sing 284 n y C5A C6A NAP sing 285 n y C5A C4A NAP doub 286 n y C6A N6A NAP sing 287 n n C6A N1A NAP doub 288 n y N6A H61A NAP sing 289 n n N6A H62A NAP sing 290 n n N1A C2A NAP sing 291 n y C2A N3A NAP doub 292 n y C2A H2A NAP sing 293 n n N3A C4A NAP sing 294 n y O3 PN NAP sing 295 n n PN O1N NAP doub 296 n n PN O2N NAP sing 297 n n PN O5D NAP sing 298 n n O5D C5D NAP sing 299 n n C5D C4D NAP sing 300 n n C5D H51N NAP sing 301 n n C5D H52N NAP sing 302 n n C4D O4D NAP sing 303 n n C4D C3D NAP sing 304 n n C4D H4D NAP sing 305 n n O4D C1D NAP sing 306 n n C3D O3D NAP sing 307 n n C3D C2D NAP sing 308 n n C3D H3D NAP sing 309 n n O3D HO3N NAP sing 310 n n C2D O2D NAP sing 311 n n C2D C1D NAP sing 312 n n C2D H2D NAP sing 313 n n O2D HO2N NAP sing 314 n n C1D N1N NAP sing 315 n n C1D H1D NAP sing 316 n n N1N C2N NAP sing 317 n y N1N C6N NAP doub 318 n y C2N C3N NAP doub 319 n y C2N H2N NAP sing 320 n n C3N C7N NAP sing 321 n n C3N C4N NAP sing 322 n y C7N O7N NAP doub 323 n n C7N N7N NAP sing 324 n n N7N H71N NAP sing 325 n n N7N H72N NAP sing 326 n n C4N C5N NAP doub 327 n y C4N H4N NAP sing 328 n n C5N C6N NAP sing 329 n y C5N H5N NAP sing 330 n n C6N H6N NAP sing 331 n n P2B O1X NAP doub 332 n n P2B O2X NAP sing 333 n n P2B O3X NAP sing 334 n n O2X HOP2 NAP sing 335 n n O3X HOP3 NAP sing 336 n n # _atom_sites.entry_id 2J3J _atom_sites.fract_transf_matrix[1][1] 0.020392 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 1346 1346 NAP NAP . D 3 HC4 A 1 1347 1347 HC4 HC4 . E 2 NAP B 1 2346 2346 NAP NAP . F 3 HC4 B 1 2347 2347 HC4 HC4 . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . G 4 HOH A 39 2039 2039 HOH HOH . G 4 HOH A 40 2040 2040 HOH HOH . G 4 HOH A 41 2041 2041 HOH HOH . G 4 HOH A 42 2042 2042 HOH HOH . G 4 HOH A 43 2043 2043 HOH HOH . G 4 HOH A 44 2044 2044 HOH HOH . G 4 HOH A 45 2045 2045 HOH HOH . G 4 HOH A 46 2046 2046 HOH HOH . G 4 HOH A 47 2047 2047 HOH HOH . G 4 HOH A 48 2048 2048 HOH HOH . G 4 HOH A 49 2049 2049 HOH HOH . G 4 HOH A 50 2050 2050 HOH HOH . G 4 HOH A 51 2051 2051 HOH HOH . G 4 HOH A 52 2052 2052 HOH HOH . G 4 HOH A 53 2053 2053 HOH HOH . G 4 HOH A 54 2054 2054 HOH HOH . G 4 HOH A 55 2055 2055 HOH HOH . G 4 HOH A 56 2056 2056 HOH HOH . G 4 HOH A 57 2057 2057 HOH HOH . G 4 HOH A 58 2058 2058 HOH HOH . G 4 HOH A 59 2059 2059 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . H 4 HOH B 13 2013 2013 HOH HOH . H 4 HOH B 14 2014 2014 HOH HOH . H 4 HOH B 15 2015 2015 HOH HOH . H 4 HOH B 16 2016 2016 HOH HOH . H 4 HOH B 17 2017 2017 HOH HOH . H 4 HOH B 18 2018 2018 HOH HOH . H 4 HOH B 19 2019 2019 HOH HOH . H 4 HOH B 20 2020 2020 HOH HOH . H 4 HOH B 21 2021 2021 HOH HOH . H 4 HOH B 22 2022 2022 HOH HOH . H 4 HOH B 23 2023 2023 HOH HOH . H 4 HOH B 24 2024 2024 HOH HOH . H 4 HOH B 25 2025 2025 HOH HOH . H 4 HOH B 26 2026 2026 HOH HOH . H 4 HOH B 27 2027 2027 HOH HOH . H 4 HOH B 28 2028 2028 HOH HOH . H 4 HOH B 29 2029 2029 HOH HOH . H 4 HOH B 30 2030 2030 HOH HOH . H 4 HOH B 31 2031 2031 HOH HOH . H 4 HOH B 32 2032 2032 HOH HOH . H 4 HOH B 33 2033 2033 HOH HOH . H 4 HOH B 34 2034 2034 HOH HOH . H 4 HOH B 35 2035 2035 HOH HOH . H 4 HOH B 36 2036 2036 HOH HOH . H 4 HOH B 37 2037 2037 HOH HOH . H 4 HOH B 38 2038 2038 HOH HOH . H 4 HOH B 39 2039 2039 HOH HOH . H 4 HOH B 40 2040 2040 HOH HOH . H 4 HOH B 41 2041 2041 HOH HOH . H 4 HOH B 42 2042 2042 HOH HOH . H 4 HOH B 43 2043 2043 HOH HOH . H 4 HOH B 44 2044 2044 HOH HOH . H 4 HOH B 45 2045 2045 HOH HOH . H 4 HOH B 46 2046 2046 HOH HOH . H 4 HOH B 47 2047 2047 HOH HOH . H 4 HOH B 48 2048 2048 HOH HOH . H 4 HOH B 49 2049 2049 HOH HOH . H 4 HOH B 50 2050 2050 HOH HOH . H 4 HOH B 51 2051 2051 HOH HOH . H 4 HOH B 52 2052 2052 HOH HOH . H 4 HOH B 53 2053 2053 HOH HOH . H 4 HOH B 54 2054 2054 HOH HOH . H 4 HOH B 55 2055 2055 HOH HOH . H 4 HOH B 56 2056 2056 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 2 17.054 10.743 46.147 1 82.4 ? PA NAP 2346 B 1 HETATM 2 O O1A NAP . . . E 2 17.054 11.032 44.687 1 78.3 ? O1A NAP 2346 B 1 HETATM 3 O O2A NAP . . . E 2 18.13 9.936 46.788 1 78.9 ? O2A NAP 2346 B 1 HETATM 4 O O5B NAP . . . E 2 15.637 10.019 46.434 1 80.9 ? O5B NAP 2346 B 1 HETATM 5 C C5B NAP . . . E 2 15.162 9.529 47.679 1 79.16 ? C5B NAP 2346 B 1 HETATM 6 C C4B NAP . . . E 2 15.381 8.024 47.855 1 68.72 ? C4B NAP 2346 B 1 HETATM 7 O O4B NAP . . . E 2 14.541 7.771 48.971 1 77.71 ? O4B NAP 2346 B 1 HETATM 8 C C3B NAP . . . E 2 14.804 6.993 46.887 1 65.86 ? C3B NAP 2346 B 1 HETATM 9 O O3B NAP . . . E 2 15.669 6.694 45.786 1 61.35 ? O3B NAP 2346 B 1 HETATM 10 C C2B NAP . . . E 2 14.53 5.778 47.809 1 57.54 ? C2B NAP 2346 B 1 HETATM 11 O O2B NAP . . . E 2 15.414 4.624 47.594 1 39.97 ? O2B NAP 2346 B 1 HETATM 12 C C1B NAP . . . E 2 14.641 6.363 49.228 1 60.09 ? C1B NAP 2346 B 1 HETATM 13 N N9A NAP . . . E 2 13.694 5.844 50.273 1 44.28 ? N9A NAP 2346 B 1 HETATM 14 C C8A NAP . . . E 2 12.388 6.139 50.386 1 35.52 ? C8A NAP 2346 B 1 HETATM 15 N N7A NAP . . . E 2 11.816 5.642 51.488 1 31.03 ? N7A NAP 2346 B 1 HETATM 16 C C5A NAP . . . E 2 12.821 5.013 52.064 1 31.84 ? C5A NAP 2346 B 1 HETATM 17 C C6A NAP . . . E 2 12.765 4.322 53.288 1 26.04 ? C6A NAP 2346 B 1 HETATM 18 N N6A NAP . . . E 2 11.655 4.236 54.008 1 22.99 ? N6A NAP 2346 B 1 HETATM 19 N N1A NAP . . . E 2 13.927 3.754 53.726 1 19.88 ? N1A NAP 2346 B 1 HETATM 20 C C2A NAP . . . E 2 15.068 3.843 53.028 1 17.03 ? C2A NAP 2346 B 1 HETATM 21 N N3A NAP . . . E 2 15.116 4.504 51.856 1 21.42 ? N3A NAP 2346 B 1 HETATM 22 C C4A NAP . . . E 2 14.007 5.1 51.341 1 32.58 ? C4A NAP 2346 B 1 HETATM 23 O O3 NAP . . . E 2 17.032 12.225 46.839 1 70.19 ? O3 NAP 2346 B 1 HETATM 24 P PN NAP . . . E 2 18.265 13.164 47.318 1 80.23 ? PN NAP 2346 B 1 HETATM 25 O O1N NAP . . . E 2 17.728 14.53 47.535 1 78.21 ? O1N NAP 2346 B 1 HETATM 26 O O2N NAP . . . E 2 19.35 12.954 46.337 1 74.56 ? O2N NAP 2346 B 1 HETATM 27 O O5D NAP . . . E 2 18.818 12.415 48.674 1 69.98 ? O5D NAP 2346 B 1 HETATM 28 C C5D NAP . . . E 2 17.858 12.081 49.734 1 75.88 ? C5D NAP 2346 B 1 HETATM 29 C C4D NAP . . . E 2 18.065 12.378 51.249 1 75.67 ? C4D NAP 2346 B 1 HETATM 30 O O4D NAP . . . E 2 19.066 13.351 51.611 1 88.01 ? O4D NAP 2346 B 1 HETATM 31 C C3D NAP . . . E 2 16.846 12.923 51.976 1 69.22 ? C3D NAP 2346 B 1 HETATM 32 O O3D NAP . . . E 2 16.692 12.44 53.314 1 65.76 ? O3D NAP 2346 B 1 HETATM 33 C C2D NAP . . . E 2 17.009 14.422 51.885 1 74.42 ? C2D NAP 2346 B 1 HETATM 34 O O2D NAP . . . E 2 16.226 15.194 52.802 1 69.27 ? O2D NAP 2346 B 1 HETATM 35 C C1D NAP . . . E 2 18.492 14.598 52.039 1 68.77 ? C1D NAP 2346 B 1 HETATM 36 N N1N NAP . . . E 2 19.033 15.848 51.467 1 51.11 ? N1N NAP 2346 B 1 HETATM 37 C C2N NAP . . . E 2 19.605 16.663 52.454 1 36.53 ? C2N NAP 2346 B 1 HETATM 38 C C3N NAP . . . E 2 20.158 17.898 52.135 1 26.12 ? C3N NAP 2346 B 1 HETATM 39 C C7N NAP . . . E 2 20.906 18.652 53.243 1 23.4 ? C7N NAP 2346 B 1 HETATM 40 O O7N NAP . . . E 2 20.771 19.865 53.349 1 24.37 ? O7N NAP 2346 B 1 HETATM 41 N N7N NAP . . . E 2 21.57 17.923 54.141 1 8.94 ? N7N NAP 2346 B 1 HETATM 42 C C4N NAP . . . E 2 20.099 18.313 50.777 1 25.36 ? C4N NAP 2346 B 1 HETATM 43 C C5N NAP . . . E 2 19.531 17.519 49.755 1 32.6 ? C5N NAP 2346 B 1 HETATM 44 C C6N NAP . . . E 2 19.001 16.27 50.099 1 40.65 ? C6N NAP 2346 B 1 HETATM 45 P P2B NAP . . . E 2 15.198 3.81 47.466 1 30.5 ? P2B NAP 2346 B 1 HETATM 46 O O1X NAP . . . E 2 16.582 3.318 47.306 1 32.59 ? O1X NAP 2346 B 1 HETATM 47 O O2X NAP . . . E 2 14.567 3.134 48.624 1 26.04 ? O2X NAP 2346 B 1 HETATM 48 O O3X NAP . . . E 2 14.397 3.572 46.238 1 30.53 ? O3X NAP 2346 B 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #