data_2J3K # _model_server_result.job_id yg2ixFVBgJpevAfG4Fqnug _model_server_result.datetime_utc '2024-11-28 07:23:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1346}' # _entry.id 2J3K # _exptl.entry_id 2J3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2J3K _cell.length_a 49.08 _cell.length_b 122.45 _cell.length_c 147.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 263 n n PA O2A NAP sing 264 n n PA O5B NAP sing 265 n n PA O3 NAP sing 266 n n O2A HOA2 NAP sing 267 n n O5B C5B NAP sing 268 n n C5B C4B NAP sing 269 n n C5B H51A NAP sing 270 n n C5B H52A NAP sing 271 n n C4B O4B NAP sing 272 n n C4B C3B NAP sing 273 n n C4B H4B NAP sing 274 n n O4B C1B NAP sing 275 n n C3B O3B NAP sing 276 n n C3B C2B NAP sing 277 n n C3B H3B NAP sing 278 n n O3B HO3A NAP sing 279 n n C2B O2B NAP sing 280 n n C2B C1B NAP sing 281 n n C2B H2B NAP sing 282 n n O2B P2B NAP sing 283 n n C1B N9A NAP sing 284 n n C1B H1B NAP sing 285 n n N9A C8A NAP sing 286 n y N9A C4A NAP sing 287 n y C8A N7A NAP doub 288 n y C8A H8A NAP sing 289 n n N7A C5A NAP sing 290 n y C5A C6A NAP sing 291 n y C5A C4A NAP doub 292 n y C6A N6A NAP sing 293 n n C6A N1A NAP doub 294 n y N6A H61A NAP sing 295 n n N6A H62A NAP sing 296 n n N1A C2A NAP sing 297 n y C2A N3A NAP doub 298 n y C2A H2A NAP sing 299 n n N3A C4A NAP sing 300 n y O3 PN NAP sing 301 n n PN O1N NAP doub 302 n n PN O2N NAP sing 303 n n PN O5D NAP sing 304 n n O5D C5D NAP sing 305 n n C5D C4D NAP sing 306 n n C5D H51N NAP sing 307 n n C5D H52N NAP sing 308 n n C4D O4D NAP sing 309 n n C4D C3D NAP sing 310 n n C4D H4D NAP sing 311 n n O4D C1D NAP sing 312 n n C3D O3D NAP sing 313 n n C3D C2D NAP sing 314 n n C3D H3D NAP sing 315 n n O3D HO3N NAP sing 316 n n C2D O2D NAP sing 317 n n C2D C1D NAP sing 318 n n C2D H2D NAP sing 319 n n O2D HO2N NAP sing 320 n n C1D N1N NAP sing 321 n n C1D H1D NAP sing 322 n n N1N C2N NAP sing 323 n y N1N C6N NAP doub 324 n y C2N C3N NAP doub 325 n y C2N H2N NAP sing 326 n n C3N C7N NAP sing 327 n n C3N C4N NAP sing 328 n y C7N O7N NAP doub 329 n n C7N N7N NAP sing 330 n n N7N H71N NAP sing 331 n n N7N H72N NAP sing 332 n n C4N C5N NAP doub 333 n y C4N H4N NAP sing 334 n n C5N C6N NAP sing 335 n y C5N H5N NAP sing 336 n n C6N H6N NAP sing 337 n n P2B O1X NAP doub 338 n n P2B O2X NAP sing 339 n n P2B O3X NAP sing 340 n n O2X HOP2 NAP sing 341 n n O3X HOP3 NAP sing 342 n n # _atom_sites.entry_id 2J3K _atom_sites.fract_transf_matrix[1][1] 0.020375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 1346 1346 NAP NAP . D 3 HNE A 1 1347 1347 HNE HNE . E 2 NAP B 1 2346 2346 NAP NAP . F 3 HNE B 1 2347 2347 HNE HNE . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . G 4 HOH A 39 2039 2039 HOH HOH . G 4 HOH A 40 2040 2040 HOH HOH . G 4 HOH A 41 2041 2041 HOH HOH . G 4 HOH A 42 2042 2042 HOH HOH . G 4 HOH A 43 2043 2043 HOH HOH . G 4 HOH A 44 2044 2044 HOH HOH . G 4 HOH A 45 2045 2045 HOH HOH . G 4 HOH A 46 2046 2046 HOH HOH . G 4 HOH A 47 2047 2047 HOH HOH . G 4 HOH A 48 2048 2048 HOH HOH . G 4 HOH A 49 2049 2049 HOH HOH . G 4 HOH A 50 2050 2050 HOH HOH . G 4 HOH A 51 2051 2051 HOH HOH . G 4 HOH A 52 2052 2052 HOH HOH . G 4 HOH A 53 2053 2053 HOH HOH . G 4 HOH A 54 2054 2054 HOH HOH . G 4 HOH A 55 2055 2055 HOH HOH . G 4 HOH A 56 2056 2056 HOH HOH . G 4 HOH A 57 2057 2057 HOH HOH . G 4 HOH A 58 2058 2058 HOH HOH . G 4 HOH A 59 2059 2059 HOH HOH . G 4 HOH A 60 2060 2060 HOH HOH . G 4 HOH A 61 2061 2061 HOH HOH . G 4 HOH A 62 2062 2062 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . H 4 HOH B 13 2013 2013 HOH HOH . H 4 HOH B 14 2014 2014 HOH HOH . H 4 HOH B 15 2015 2015 HOH HOH . H 4 HOH B 16 2016 2016 HOH HOH . H 4 HOH B 17 2017 2017 HOH HOH . H 4 HOH B 18 2018 2018 HOH HOH . H 4 HOH B 19 2019 2019 HOH HOH . H 4 HOH B 20 2020 2020 HOH HOH . H 4 HOH B 21 2021 2021 HOH HOH . H 4 HOH B 22 2022 2022 HOH HOH . H 4 HOH B 23 2023 2023 HOH HOH . H 4 HOH B 24 2024 2024 HOH HOH . H 4 HOH B 25 2025 2025 HOH HOH . H 4 HOH B 26 2026 2026 HOH HOH . H 4 HOH B 27 2027 2027 HOH HOH . H 4 HOH B 28 2028 2028 HOH HOH . H 4 HOH B 29 2029 2029 HOH HOH . H 4 HOH B 30 2030 2030 HOH HOH . H 4 HOH B 31 2031 2031 HOH HOH . H 4 HOH B 32 2032 2032 HOH HOH . H 4 HOH B 33 2033 2033 HOH HOH . H 4 HOH B 34 2034 2034 HOH HOH . H 4 HOH B 35 2035 2035 HOH HOH . H 4 HOH B 36 2036 2036 HOH HOH . H 4 HOH B 37 2037 2037 HOH HOH . H 4 HOH B 38 2038 2038 HOH HOH . H 4 HOH B 39 2039 2039 HOH HOH . H 4 HOH B 40 2040 2040 HOH HOH . H 4 HOH B 41 2041 2041 HOH HOH . H 4 HOH B 42 2042 2042 HOH HOH . H 4 HOH B 43 2043 2043 HOH HOH . H 4 HOH B 44 2044 2044 HOH HOH . H 4 HOH B 45 2045 2045 HOH HOH . H 4 HOH B 46 2046 2046 HOH HOH . H 4 HOH B 47 2047 2047 HOH HOH . H 4 HOH B 48 2048 2048 HOH HOH . H 4 HOH B 49 2049 2049 HOH HOH . H 4 HOH B 50 2050 2050 HOH HOH . H 4 HOH B 51 2051 2051 HOH HOH . H 4 HOH B 52 2052 2052 HOH HOH . H 4 HOH B 53 2053 2053 HOH HOH . H 4 HOH B 54 2054 2054 HOH HOH . H 4 HOH B 55 2055 2055 HOH HOH . H 4 HOH B 56 2056 2056 HOH HOH . H 4 HOH B 57 2057 2057 HOH HOH . H 4 HOH B 58 2058 2058 HOH HOH . H 4 HOH B 59 2059 2059 HOH HOH . H 4 HOH B 60 2060 2060 HOH HOH . H 4 HOH B 61 2061 2061 HOH HOH . H 4 HOH B 62 2062 2062 HOH HOH . H 4 HOH B 63 2063 2063 HOH HOH . H 4 HOH B 64 2064 2064 HOH HOH . H 4 HOH B 65 2065 2065 HOH HOH . H 4 HOH B 66 2066 2066 HOH HOH . H 4 HOH B 67 2067 2067 HOH HOH . H 4 HOH B 68 2068 2068 HOH HOH . H 4 HOH B 69 2069 2069 HOH HOH . H 4 HOH B 70 2070 2070 HOH HOH . H 4 HOH B 71 2071 2071 HOH HOH . H 4 HOH B 72 2072 2072 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 29.08 9.78 89.419 1 87.5 ? PA NAP 1346 A 1 HETATM 2 O O1A NAP . . . C 2 29.953 9.148 90.435 1 80.11 ? O1A NAP 1346 A 1 HETATM 3 O O2A NAP . . . C 2 28.152 10.842 89.888 1 79.01 ? O2A NAP 1346 A 1 HETATM 4 O O5B NAP . . . C 2 28.28 8.568 88.647 1 70.01 ? O5B NAP 1346 A 1 HETATM 5 C C5B NAP . . . C 2 26.968 8.077 88.992 1 74.46 ? C5B NAP 1346 A 1 HETATM 6 C C4B NAP . . . C 2 25.818 8.994 88.574 1 66.77 ? C4B NAP 1346 A 1 HETATM 7 O O4B NAP . . . C 2 24.981 8.453 87.514 1 81.28 ? O4B NAP 1346 A 1 HETATM 8 C C3B NAP . . . C 2 24.922 9.224 89.754 1 69.2 ? C3B NAP 1346 A 1 HETATM 9 O O3B NAP . . . C 2 25.403 10.254 90.632 1 75.12 ? O3B NAP 1346 A 1 HETATM 10 C C2B NAP . . . C 2 23.546 9.482 89.112 1 72.4 ? C2B NAP 1346 A 1 HETATM 11 O O2B NAP . . . C 2 23.271 10.941 89.127 1 64.42 ? O2B NAP 1346 A 1 HETATM 12 C C1B NAP . . . C 2 23.622 8.889 87.664 1 69.88 ? C1B NAP 1346 A 1 HETATM 13 N N9A NAP . . . C 2 22.739 7.728 87.266 1 52.18 ? N9A NAP 1346 A 1 HETATM 14 C C8A NAP . . . C 2 22.792 6.448 87.706 1 46.11 ? C8A NAP 1346 A 1 HETATM 15 N N7A NAP . . . C 2 21.895 5.637 87.154 1 42.85 ? N7A NAP 1346 A 1 HETATM 16 C C5A NAP . . . C 2 21.273 6.462 86.333 1 41.7 ? C5A NAP 1346 A 1 HETATM 17 C C6A NAP . . . C 2 20.199 6.098 85.51 1 37.66 ? C6A NAP 1346 A 1 HETATM 18 N N6A NAP . . . C 2 19.7 4.86 85.513 1 35.55 ? N6A NAP 1346 A 1 HETATM 19 N N1A NAP . . . C 2 19.675 7.085 84.726 1 34.09 ? N1A NAP 1346 A 1 HETATM 20 C C2A NAP . . . C 2 20.148 8.345 84.731 1 26.9 ? C2A NAP 1346 A 1 HETATM 21 N N3A NAP . . . C 2 21.175 8.691 85.536 1 30.64 ? N3A NAP 1346 A 1 HETATM 22 C C4A NAP . . . C 2 21.764 7.768 86.356 1 41.7 ? C4A NAP 1346 A 1 HETATM 23 O O3 NAP . . . C 2 30.088 10.461 88.319 1 79.01 ? O3 NAP 1346 A 1 HETATM 24 P PN NAP . . . C 2 30.163 10.894 86.716 1 80.34 ? PN NAP 1346 A 1 HETATM 25 O O1N NAP . . . C 2 30.619 12.307 86.644 1 78.51 ? O1N NAP 1346 A 1 HETATM 26 O O2N NAP . . . C 2 28.815 10.612 86.156 1 75.25 ? O2N NAP 1346 A 1 HETATM 27 O O5D NAP . . . C 2 31.317 9.974 85.961 1 72.23 ? O5D NAP 1346 A 1 HETATM 28 C C5D NAP . . . C 2 31.268 9.724 84.522 1 75.2 ? C5D NAP 1346 A 1 HETATM 29 C C4D NAP . . . C 2 30.345 8.905 83.57 1 68.43 ? C4D NAP 1346 A 1 HETATM 30 O O4D NAP . . . C 2 31.074 8.853 82.325 1 70.38 ? O4D NAP 1346 A 1 HETATM 31 C C3D NAP . . . C 2 30.111 7.404 83.629 1 72.8 ? C3D NAP 1346 A 1 HETATM 32 O O3D NAP . . . C 2 29.014 6.987 82.797 1 78.61 ? O3D NAP 1346 A 1 HETATM 33 C C2D NAP . . . C 2 31.426 6.779 83.212 1 79.76 ? C2D NAP 1346 A 1 HETATM 34 O O2D NAP . . . C 2 31.389 5.398 82.877 1 77.21 ? O2D NAP 1346 A 1 HETATM 35 C C1D NAP . . . C 2 31.875 7.664 82.083 1 75.55 ? C1D NAP 1346 A 1 HETATM 36 N N1N NAP . . . C 2 33.347 7.817 81.875 1 62.11 ? N1N NAP 1346 A 1 HETATM 37 C C2N NAP . . . C 2 33.705 8.099 80.536 1 51.59 ? C2N NAP 1346 A 1 HETATM 38 C C3N NAP . . . C 2 35.053 8.278 80.159 1 41.67 ? C3N NAP 1346 A 1 HETATM 39 C C7N NAP . . . C 2 35.448 8.653 78.723 1 29.46 ? C7N NAP 1346 A 1 HETATM 40 O O7N NAP . . . C 2 36.528 9.195 78.496 1 18.88 ? O7N NAP 1346 A 1 HETATM 41 N N7N NAP . . . C 2 34.585 8.37 77.758 1 19.86 ? N7N NAP 1346 A 1 HETATM 42 C C4N NAP . . . C 2 36.022 8.137 81.178 1 46.31 ? C4N NAP 1346 A 1 HETATM 43 C C5N NAP . . . C 2 35.696 7.865 82.529 1 51.8 ? C5N NAP 1346 A 1 HETATM 44 C C6N NAP . . . C 2 34.354 7.696 82.891 1 56.58 ? C6N NAP 1346 A 1 HETATM 45 P P2B NAP . . . C 2 21.882 11.631 89.333 1 56.89 ? P2B NAP 1346 A 1 HETATM 46 O O1X NAP . . . C 2 20.611 10.912 89.626 1 55.8 ? O1X NAP 1346 A 1 HETATM 47 O O2X NAP . . . C 2 22.379 12.263 90.568 1 55.42 ? O2X NAP 1346 A 1 HETATM 48 O O3X NAP . . . C 2 21.731 12.65 88.273 1 57.79 ? O3X NAP 1346 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #