data_2J3K # _model_server_result.job_id 6qT0VjgjoKjjj8hFQDXCDA _model_server_result.datetime_utc '2024-11-24 15:00:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2346}' # _entry.id 2J3K # _exptl.entry_id 2J3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2J3K _cell.length_a 49.08 _cell.length_b 122.45 _cell.length_c 147.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 263 n n PA O2A NAP sing 264 n n PA O5B NAP sing 265 n n PA O3 NAP sing 266 n n O2A HOA2 NAP sing 267 n n O5B C5B NAP sing 268 n n C5B C4B NAP sing 269 n n C5B H51A NAP sing 270 n n C5B H52A NAP sing 271 n n C4B O4B NAP sing 272 n n C4B C3B NAP sing 273 n n C4B H4B NAP sing 274 n n O4B C1B NAP sing 275 n n C3B O3B NAP sing 276 n n C3B C2B NAP sing 277 n n C3B H3B NAP sing 278 n n O3B HO3A NAP sing 279 n n C2B O2B NAP sing 280 n n C2B C1B NAP sing 281 n n C2B H2B NAP sing 282 n n O2B P2B NAP sing 283 n n C1B N9A NAP sing 284 n n C1B H1B NAP sing 285 n n N9A C8A NAP sing 286 n y N9A C4A NAP sing 287 n y C8A N7A NAP doub 288 n y C8A H8A NAP sing 289 n n N7A C5A NAP sing 290 n y C5A C6A NAP sing 291 n y C5A C4A NAP doub 292 n y C6A N6A NAP sing 293 n n C6A N1A NAP doub 294 n y N6A H61A NAP sing 295 n n N6A H62A NAP sing 296 n n N1A C2A NAP sing 297 n y C2A N3A NAP doub 298 n y C2A H2A NAP sing 299 n n N3A C4A NAP sing 300 n y O3 PN NAP sing 301 n n PN O1N NAP doub 302 n n PN O2N NAP sing 303 n n PN O5D NAP sing 304 n n O5D C5D NAP sing 305 n n C5D C4D NAP sing 306 n n C5D H51N NAP sing 307 n n C5D H52N NAP sing 308 n n C4D O4D NAP sing 309 n n C4D C3D NAP sing 310 n n C4D H4D NAP sing 311 n n O4D C1D NAP sing 312 n n C3D O3D NAP sing 313 n n C3D C2D NAP sing 314 n n C3D H3D NAP sing 315 n n O3D HO3N NAP sing 316 n n C2D O2D NAP sing 317 n n C2D C1D NAP sing 318 n n C2D H2D NAP sing 319 n n O2D HO2N NAP sing 320 n n C1D N1N NAP sing 321 n n C1D H1D NAP sing 322 n n N1N C2N NAP sing 323 n y N1N C6N NAP doub 324 n y C2N C3N NAP doub 325 n y C2N H2N NAP sing 326 n n C3N C7N NAP sing 327 n n C3N C4N NAP sing 328 n y C7N O7N NAP doub 329 n n C7N N7N NAP sing 330 n n N7N H71N NAP sing 331 n n N7N H72N NAP sing 332 n n C4N C5N NAP doub 333 n y C4N H4N NAP sing 334 n n C5N C6N NAP sing 335 n y C5N H5N NAP sing 336 n n C6N H6N NAP sing 337 n n P2B O1X NAP doub 338 n n P2B O2X NAP sing 339 n n P2B O3X NAP sing 340 n n O2X HOP2 NAP sing 341 n n O3X HOP3 NAP sing 342 n n # _atom_sites.entry_id 2J3K _atom_sites.fract_transf_matrix[1][1] 0.020375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 1346 1346 NAP NAP . D 3 HNE A 1 1347 1347 HNE HNE . E 2 NAP B 1 2346 2346 NAP NAP . F 3 HNE B 1 2347 2347 HNE HNE . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . G 4 HOH A 39 2039 2039 HOH HOH . G 4 HOH A 40 2040 2040 HOH HOH . G 4 HOH A 41 2041 2041 HOH HOH . G 4 HOH A 42 2042 2042 HOH HOH . G 4 HOH A 43 2043 2043 HOH HOH . G 4 HOH A 44 2044 2044 HOH HOH . G 4 HOH A 45 2045 2045 HOH HOH . G 4 HOH A 46 2046 2046 HOH HOH . G 4 HOH A 47 2047 2047 HOH HOH . G 4 HOH A 48 2048 2048 HOH HOH . G 4 HOH A 49 2049 2049 HOH HOH . G 4 HOH A 50 2050 2050 HOH HOH . G 4 HOH A 51 2051 2051 HOH HOH . G 4 HOH A 52 2052 2052 HOH HOH . G 4 HOH A 53 2053 2053 HOH HOH . G 4 HOH A 54 2054 2054 HOH HOH . G 4 HOH A 55 2055 2055 HOH HOH . G 4 HOH A 56 2056 2056 HOH HOH . G 4 HOH A 57 2057 2057 HOH HOH . G 4 HOH A 58 2058 2058 HOH HOH . G 4 HOH A 59 2059 2059 HOH HOH . G 4 HOH A 60 2060 2060 HOH HOH . G 4 HOH A 61 2061 2061 HOH HOH . G 4 HOH A 62 2062 2062 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . H 4 HOH B 13 2013 2013 HOH HOH . H 4 HOH B 14 2014 2014 HOH HOH . H 4 HOH B 15 2015 2015 HOH HOH . H 4 HOH B 16 2016 2016 HOH HOH . H 4 HOH B 17 2017 2017 HOH HOH . H 4 HOH B 18 2018 2018 HOH HOH . H 4 HOH B 19 2019 2019 HOH HOH . H 4 HOH B 20 2020 2020 HOH HOH . H 4 HOH B 21 2021 2021 HOH HOH . H 4 HOH B 22 2022 2022 HOH HOH . H 4 HOH B 23 2023 2023 HOH HOH . H 4 HOH B 24 2024 2024 HOH HOH . H 4 HOH B 25 2025 2025 HOH HOH . H 4 HOH B 26 2026 2026 HOH HOH . H 4 HOH B 27 2027 2027 HOH HOH . H 4 HOH B 28 2028 2028 HOH HOH . H 4 HOH B 29 2029 2029 HOH HOH . H 4 HOH B 30 2030 2030 HOH HOH . H 4 HOH B 31 2031 2031 HOH HOH . H 4 HOH B 32 2032 2032 HOH HOH . H 4 HOH B 33 2033 2033 HOH HOH . H 4 HOH B 34 2034 2034 HOH HOH . H 4 HOH B 35 2035 2035 HOH HOH . H 4 HOH B 36 2036 2036 HOH HOH . H 4 HOH B 37 2037 2037 HOH HOH . H 4 HOH B 38 2038 2038 HOH HOH . H 4 HOH B 39 2039 2039 HOH HOH . H 4 HOH B 40 2040 2040 HOH HOH . H 4 HOH B 41 2041 2041 HOH HOH . H 4 HOH B 42 2042 2042 HOH HOH . H 4 HOH B 43 2043 2043 HOH HOH . H 4 HOH B 44 2044 2044 HOH HOH . H 4 HOH B 45 2045 2045 HOH HOH . H 4 HOH B 46 2046 2046 HOH HOH . H 4 HOH B 47 2047 2047 HOH HOH . H 4 HOH B 48 2048 2048 HOH HOH . H 4 HOH B 49 2049 2049 HOH HOH . H 4 HOH B 50 2050 2050 HOH HOH . H 4 HOH B 51 2051 2051 HOH HOH . H 4 HOH B 52 2052 2052 HOH HOH . H 4 HOH B 53 2053 2053 HOH HOH . H 4 HOH B 54 2054 2054 HOH HOH . H 4 HOH B 55 2055 2055 HOH HOH . H 4 HOH B 56 2056 2056 HOH HOH . H 4 HOH B 57 2057 2057 HOH HOH . H 4 HOH B 58 2058 2058 HOH HOH . H 4 HOH B 59 2059 2059 HOH HOH . H 4 HOH B 60 2060 2060 HOH HOH . H 4 HOH B 61 2061 2061 HOH HOH . H 4 HOH B 62 2062 2062 HOH HOH . H 4 HOH B 63 2063 2063 HOH HOH . H 4 HOH B 64 2064 2064 HOH HOH . H 4 HOH B 65 2065 2065 HOH HOH . H 4 HOH B 66 2066 2066 HOH HOH . H 4 HOH B 67 2067 2067 HOH HOH . H 4 HOH B 68 2068 2068 HOH HOH . H 4 HOH B 69 2069 2069 HOH HOH . H 4 HOH B 70 2070 2070 HOH HOH . H 4 HOH B 71 2071 2071 HOH HOH . H 4 HOH B 72 2072 2072 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 2 16.336 11.458 45.995 1 67.89 ? PA NAP 2346 B 1 HETATM 2 O O1A NAP . . . E 2 14.943 11.902 46.238 1 77.45 ? O1A NAP 2346 B 1 HETATM 3 O O2A NAP . . . E 2 16.835 11.591 44.605 1 79.99 ? O2A NAP 2346 B 1 HETATM 4 O O5B NAP . . . E 2 16.571 9.92 46.527 1 80.9 ? O5B NAP 2346 B 1 HETATM 5 C C5B NAP . . . E 2 15.361 9.19 46.753 1 72.77 ? C5B NAP 2346 B 1 HETATM 6 C C4B NAP . . . E 2 15.547 7.916 47.512 1 74.27 ? C4B NAP 2346 B 1 HETATM 7 O O4B NAP . . . E 2 14.585 7.892 48.584 1 80.49 ? O4B NAP 2346 B 1 HETATM 8 C C3B NAP . . . E 2 15.236 6.706 46.674 1 74.43 ? C3B NAP 2346 B 1 HETATM 9 O O3B NAP . . . E 2 16.385 6.19 45.987 1 71.77 ? O3B NAP 2346 B 1 HETATM 10 C C2B NAP . . . E 2 14.627 5.742 47.704 1 64.7 ? C2B NAP 2346 B 1 HETATM 11 O O2B NAP . . . E 2 15.287 4.438 47.755 1 48.39 ? O2B NAP 2346 B 1 HETATM 12 C C1B NAP . . . E 2 14.713 6.513 49.037 1 65.42 ? C1B NAP 2346 B 1 HETATM 13 N N9A NAP . . . E 2 13.77 6.066 50.128 1 51.3 ? N9A NAP 2346 B 1 HETATM 14 C C8A NAP . . . E 2 12.475 6.383 50.172 1 44.06 ? C8A NAP 2346 B 1 HETATM 15 N N7A NAP . . . E 2 11.821 5.912 51.233 1 38.9 ? N7A NAP 2346 B 1 HETATM 16 C C5A NAP . . . E 2 12.773 5.28 51.878 1 36.22 ? C5A NAP 2346 B 1 HETATM 17 C C6A NAP . . . E 2 12.621 4.595 53.096 1 33.53 ? C6A NAP 2346 B 1 HETATM 18 N N6A NAP . . . E 2 11.455 4.485 53.728 1 36.35 ? N6A NAP 2346 B 1 HETATM 19 N N1A NAP . . . E 2 13.728 4.006 53.616 1 30.25 ? N1A NAP 2346 B 1 HETATM 20 C C2A NAP . . . E 2 14.919 4.077 53.001 1 29.96 ? C2A NAP 2346 B 1 HETATM 21 N N3A NAP . . . E 2 15.054 4.727 51.826 1 30.9 ? N3A NAP 2346 B 1 HETATM 22 C C4A NAP . . . E 2 14.001 5.346 51.232 1 37.32 ? C4A NAP 2346 B 1 HETATM 23 O O3 NAP . . . E 2 17.181 12.439 46.988 1 78.9 ? O3 NAP 2346 B 1 HETATM 24 P PN NAP . . . E 2 18.735 12.821 47.229 1 82.29 ? PN NAP 2346 B 1 HETATM 25 O O1N NAP . . . E 2 19.597 11.674 46.841 1 77.23 ? O1N NAP 2346 B 1 HETATM 26 O O2N NAP . . . E 2 18.921 14.161 46.625 1 69.08 ? O2N NAP 2346 B 1 HETATM 27 O O5D NAP . . . E 2 18.901 12.95 48.835 1 80.2 ? O5D NAP 2346 B 1 HETATM 28 C C5D NAP . . . E 2 18.127 12.196 49.831 1 78.12 ? C5D NAP 2346 B 1 HETATM 29 C C4D NAP . . . E 2 18.158 12.579 51.334 1 70.46 ? C4D NAP 2346 B 1 HETATM 30 O O4D NAP . . . E 2 19.078 13.611 51.756 1 69.03 ? O4D NAP 2346 B 1 HETATM 31 C C3D NAP . . . E 2 16.881 13.118 51.954 1 77.42 ? C3D NAP 2346 B 1 HETATM 32 O O3D NAP . . . E 2 16.67 12.64 53.287 1 77.23 ? O3D NAP 2346 B 1 HETATM 33 C C2D NAP . . . E 2 16.972 14.625 51.815 1 73.05 ? C2D NAP 2346 B 1 HETATM 34 O O2D NAP . . . E 2 16.088 15.36 52.658 1 71.11 ? O2D NAP 2346 B 1 HETATM 35 C C1D NAP . . . E 2 18.441 14.867 52.052 1 76.9 ? C1D NAP 2346 B 1 HETATM 36 N N1N NAP . . . E 2 18.935 16.131 51.47 1 61.16 ? N1N NAP 2346 B 1 HETATM 37 C C2N NAP . . . E 2 19.604 16.896 52.44 1 49.81 ? C2N NAP 2346 B 1 HETATM 38 C C3N NAP . . . E 2 20.12 18.143 52.15 1 42.7 ? C3N NAP 2346 B 1 HETATM 39 C C7N NAP . . . E 2 20.892 18.942 53.201 1 37.72 ? C7N NAP 2346 B 1 HETATM 40 O O7N NAP . . . E 2 21.451 18.382 54.141 1 32.57 ? O7N NAP 2346 B 1 HETATM 41 N N7N NAP . . . E 2 20.91 20.26 53.046 1 33.06 ? N7N NAP 2346 B 1 HETATM 42 C C4N NAP . . . E 2 19.945 18.605 50.816 1 43.56 ? C4N NAP 2346 B 1 HETATM 43 C C5N NAP . . . E 2 19.3 17.845 49.8 1 46.98 ? C5N NAP 2346 B 1 HETATM 44 C C6N NAP . . . E 2 18.776 16.578 50.119 1 50.55 ? C6N NAP 2346 B 1 HETATM 45 P P2B NAP . . . E 2 14.711 2.985 47.796 1 40.63 ? P2B NAP 2346 B 1 HETATM 46 O O1X NAP . . . E 2 14.455 2.707 46.364 1 41.84 ? O1X NAP 2346 B 1 HETATM 47 O O2X NAP . . . E 2 15.901 2.254 48.249 1 44.27 ? O2X NAP 2346 B 1 HETATM 48 O O3X NAP . . . E 2 13.51 2.591 48.585 1 43.95 ? O3X NAP 2346 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #