data_2J3N # _model_server_result.job_id KRiCOgaaEL-1kKnvZy5CFA _model_server_result.datetime_utc '2025-06-22 22:40:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j3n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":600}' # _entry.id 2J3N # _exptl.entry_id 2J3N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.46 _cell.angle_gamma 90 _cell.entry_id 2J3N _cell.length_a 144.63 _cell.length_b 90.64 _cell.length_c 166.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J3N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 PQS dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K,L,M,X,Y 1 1 C,D,N,O,P,Q,R,Z,AA 2 1 E,F,S,T,U,V,W,BA,CA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 J N N ? 2 N N N ? 2 P N N ? 2 S N N ? 2 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 79 A CYS 59 1_555 A SG CYS 84 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 B SG CYS 79 B CYS 59 1_555 B SG CYS 84 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 C SG CYS 79 C CYS 59 1_555 C SG CYS 84 C CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf4 D SG CYS 79 D CYS 59 1_555 D SG CYS 84 D CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 E SG CYS 79 E CYS 59 1_555 E SG CYS 84 E CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf6 E SG CYS 517 E CYS 497 1_555 E SG CYS 518 E CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 F SG CYS 79 F CYS 59 1_555 F SG CYS 84 F CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 2J3N _atom_sites.fract_transf_matrix[1][1] 0.006914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002858 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FAD A 1 600 600 FAD FAD . H 3 NAP A 1 601 601 NAP NAP . I 4 MPD A 1 701 701 MPD MPD . J 2 FAD B 1 600 600 FAD FAD . K 3 NAP B 1 601 601 NAP NAP . L 4 MPD B 1 700 700 MPD MPD . M 4 MPD B 1 701 701 MPD MPD . N 2 FAD C 1 600 600 FAD FAD . O 3 NAP C 1 601 601 NAP NAP . P 2 FAD D 1 600 600 FAD FAD . Q 3 NAP D 1 601 601 NAP NAP . R 4 MPD D 1 700 700 MPD MPD . S 2 FAD E 1 600 600 FAD FAD . T 3 NAP E 1 601 601 NAP NAP . U 2 FAD F 1 600 600 FAD FAD . V 3 NAP F 1 601 601 NAP NAP . W 4 MPD F 1 700 700 MPD MPD . X 5 HOH A 1 2001 2001 HOH HOH . X 5 HOH A 2 2002 2002 HOH HOH . X 5 HOH A 3 2003 2003 HOH HOH . X 5 HOH A 4 2004 2004 HOH HOH . X 5 HOH A 5 2005 2005 HOH HOH . X 5 HOH A 6 2006 2006 HOH HOH . X 5 HOH A 7 2007 2007 HOH HOH . X 5 HOH A 8 2008 2008 HOH HOH . X 5 HOH A 9 2009 2009 HOH HOH . Y 5 HOH B 1 2001 2001 HOH HOH . Y 5 HOH B 2 2002 2002 HOH HOH . Y 5 HOH B 3 2003 2003 HOH HOH . Y 5 HOH B 4 2004 2004 HOH HOH . Y 5 HOH B 5 2005 2005 HOH HOH . Y 5 HOH B 6 2006 2006 HOH HOH . Y 5 HOH B 7 2007 2007 HOH HOH . Y 5 HOH B 8 2008 2008 HOH HOH . Y 5 HOH B 9 2009 2009 HOH HOH . Z 5 HOH C 1 2001 2001 HOH HOH . Z 5 HOH C 2 2002 2002 HOH HOH . Z 5 HOH C 3 2003 2003 HOH HOH . Z 5 HOH C 4 2004 2004 HOH HOH . Z 5 HOH C 5 2005 2005 HOH HOH . Z 5 HOH C 6 2006 2006 HOH HOH . Z 5 HOH C 7 2007 2007 HOH HOH . AA 5 HOH D 1 2001 2001 HOH HOH . AA 5 HOH D 2 2002 2002 HOH HOH . AA 5 HOH D 3 2003 2003 HOH HOH . AA 5 HOH D 4 2004 2004 HOH HOH . AA 5 HOH D 5 2005 2005 HOH HOH . AA 5 HOH D 6 2006 2006 HOH HOH . AA 5 HOH D 7 2007 2007 HOH HOH . AA 5 HOH D 8 2008 2008 HOH HOH . BA 5 HOH E 1 2001 2001 HOH HOH . BA 5 HOH E 2 2002 2002 HOH HOH . BA 5 HOH E 3 2003 2003 HOH HOH . BA 5 HOH E 4 2004 2004 HOH HOH . CA 5 HOH F 1 2001 2001 HOH HOH . CA 5 HOH F 2 2002 2002 HOH HOH . CA 5 HOH F 3 2003 2003 HOH HOH . CA 5 HOH F 4 2004 2004 HOH HOH . CA 5 HOH F 5 2005 2005 HOH HOH . CA 5 HOH F 6 2006 2006 HOH HOH . CA 5 HOH F 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . S 2 2.005 42.915 49.679 1 64.92 ? PA FAD 600 E 1 HETATM 2 O O1A FAD . . . S 2 3.332 42.561 50.224 1 67.2 ? O1A FAD 600 E 1 HETATM 3 O O2A FAD . . . S 2 0.955 42.103 49.053 1 65.29 ? O2A FAD 600 E 1 HETATM 4 O O5B FAD . . . S 2 1.515 44.27 50.429 1 69.18 ? O5B FAD 600 E 1 HETATM 5 C C5B FAD . . . S 2 0.269 45.04 50.306 1 72.82 ? C5B FAD 600 E 1 HETATM 6 C C4B FAD . . . S 2 -0.006 45.537 48.888 1 75.72 ? C4B FAD 600 E 1 HETATM 7 O O4B FAD . . . S 2 -0.994 46.604 48.99 1 76.84 ? O4B FAD 600 E 1 HETATM 8 C C3B FAD . . . S 2 1.171 46.129 48.072 1 77.63 ? C3B FAD 600 E 1 HETATM 9 O O3B FAD . . . S 2 1.837 45.202 47.207 1 79.28 ? O3B FAD 600 E 1 HETATM 10 C C2B FAD . . . S 2 0.534 47.317 47.334 1 78.12 ? C2B FAD 600 E 1 HETATM 11 O O2B FAD . . . S 2 0.09 47.086 46.015 1 76.62 ? O2B FAD 600 E 1 HETATM 12 C C1B FAD . . . S 2 -0.589 47.777 48.257 1 78.87 ? C1B FAD 600 E 1 HETATM 13 N N9A FAD . . . S 2 -0.282 48.89 49.196 1 80.93 ? N9A FAD 600 E 1 HETATM 14 C C8A FAD . . . S 2 0.834 49.113 49.964 1 82.48 ? C8A FAD 600 E 1 HETATM 15 N N7A FAD . . . S 2 0.793 50.21 50.702 1 82.75 ? N7A FAD 600 E 1 HETATM 16 C C5A FAD . . . S 2 -0.444 50.759 50.398 1 83.03 ? C5A FAD 600 E 1 HETATM 17 C C6A FAD . . . S 2 -1.12 51.961 50.86 1 83.21 ? C6A FAD 600 E 1 HETATM 18 N N6A FAD . . . S 2 -0.567 52.791 51.744 1 83.19 ? N6A FAD 600 E 1 HETATM 19 N N1A FAD . . . S 2 -2.356 52.237 50.366 1 83.5 ? N1A FAD 600 E 1 HETATM 20 C C2A FAD . . . S 2 -2.903 51.37 49.461 1 84.25 ? C2A FAD 600 E 1 HETATM 21 N N3A FAD . . . S 2 -2.369 50.226 48.961 1 83.34 ? N3A FAD 600 E 1 HETATM 22 C C4A FAD . . . S 2 -1.099 49.981 49.494 1 82.33 ? C4A FAD 600 E 1 HETATM 23 N N1 FAD . . . S 2 7.243 34.662 49.659 1 56.34 ? N1 FAD 600 E 1 HETATM 24 C C2 FAD . . . S 2 7.13 33.277 49.731 1 56.11 ? C2 FAD 600 E 1 HETATM 25 O O2 FAD . . . S 2 6.653 32.668 50.73 1 54.38 ? O2 FAD 600 E 1 HETATM 26 N N3 FAD . . . S 2 7.551 32.491 48.639 1 54.19 ? N3 FAD 600 E 1 HETATM 27 C C4 FAD . . . S 2 8.112 32.993 47.461 1 55.02 ? C4 FAD 600 E 1 HETATM 28 O O4 FAD . . . S 2 8.452 32.222 46.545 1 55.15 ? O4 FAD 600 E 1 HETATM 29 C C4X FAD . . . S 2 8.251 34.392 47.393 1 56.16 ? C4X FAD 600 E 1 HETATM 30 N N5 FAD . . . S 2 8.819 34.942 46.22 1 55.88 ? N5 FAD 600 E 1 HETATM 31 C C5X FAD . . . S 2 8.94 36.326 46.143 1 56.2 ? C5X FAD 600 E 1 HETATM 32 C C6 FAD . . . S 2 9.508 36.898 44.968 1 56.42 ? C6 FAD 600 E 1 HETATM 33 C C7 FAD . . . S 2 9.649 38.259 44.813 1 57.74 ? C7 FAD 600 E 1 HETATM 34 C C7M FAD . . . S 2 10.267 38.773 43.503 1 58.7 ? C7M FAD 600 E 1 HETATM 35 C C8 FAD . . . S 2 9.225 39.142 45.845 1 59.04 ? C8 FAD 600 E 1 HETATM 36 C C8M FAD . . . S 2 9.342 40.659 45.748 1 59.71 ? C8M FAD 600 E 1 HETATM 37 C C9 FAD . . . S 2 8.651 38.581 47.047 1 58.05 ? C9 FAD 600 E 1 HETATM 38 C C9A FAD . . . S 2 8.499 37.204 47.221 1 56.3 ? C9A FAD 600 E 1 HETATM 39 N N10 FAD . . . S 2 7.916 36.618 48.423 1 55.97 ? N10 FAD 600 E 1 HETATM 40 C C10 FAD . . . S 2 7.797 35.214 48.505 1 56.29 ? C10 FAD 600 E 1 HETATM 41 C C1' FAD . . . S 2 7.451 37.48 49.547 1 56.14 ? C1' FAD 600 E 1 HETATM 42 C C2' FAD . . . S 2 5.933 37.725 49.546 1 57.84 ? C2' FAD 600 E 1 HETATM 43 O O2' FAD . . . S 2 5.586 38.31 48.297 1 58.17 ? O2' FAD 600 E 1 HETATM 44 C C3' FAD . . . S 2 5.524 38.638 50.708 1 57.63 ? C3' FAD 600 E 1 HETATM 45 O O3' FAD . . . S 2 5.926 38.002 51.93 1 56.08 ? O3' FAD 600 E 1 HETATM 46 C C4' FAD . . . S 2 3.978 38.894 50.806 1 58.04 ? C4' FAD 600 E 1 HETATM 47 O O4' FAD . . . S 2 3.5 39.498 49.601 1 56.35 ? O4' FAD 600 E 1 HETATM 48 C C5' FAD . . . S 2 3.725 39.825 51.972 1 59.7 ? C5' FAD 600 E 1 HETATM 49 O O5' FAD . . . S 2 2.327 40.053 52.248 1 61.24 ? O5' FAD 600 E 1 HETATM 50 P P FAD . . . S 2 1.618 41.468 52.398 1 61.65 ? P FAD 600 E 1 HETATM 51 O O1P FAD . . . S 2 0.253 41.14 52.829 1 61.22 ? O1P FAD 600 E 1 HETATM 52 O O2P FAD . . . S 2 2.474 42.339 53.266 1 60.79 ? O2P FAD 600 E 1 HETATM 53 O O3P FAD . . . S 2 1.355 42.231 50.978 1 63.49 ? O3P FAD 600 E 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #