data_2J3N # _model_server_result.job_id dzcwC_qB3a8zRS_VY6nkzw _model_server_result.datetime_utc '2025-06-23 01:50:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j3n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":601}' # _entry.id 2J3N # _exptl.entry_id 2J3N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.46 _cell.angle_gamma 90 _cell.entry_id 2J3N _cell.length_a 144.63 _cell.length_b 90.64 _cell.length_c 166.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J3N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 PQS dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K,L,M,X,Y 1 1 C,D,N,O,P,Q,R,Z,AA 2 1 E,F,S,T,U,V,W,BA,CA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 K N N ? 3 O N N ? 3 Q N N ? 3 T N N ? 3 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 79 A CYS 59 1_555 A SG CYS 84 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 B SG CYS 79 B CYS 59 1_555 B SG CYS 84 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 C SG CYS 79 C CYS 59 1_555 C SG CYS 84 C CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf4 D SG CYS 79 D CYS 59 1_555 D SG CYS 84 D CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 E SG CYS 79 E CYS 59 1_555 E SG CYS 84 E CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf6 E SG CYS 517 E CYS 497 1_555 E SG CYS 518 E CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 F SG CYS 79 F CYS 59 1_555 F SG CYS 84 F CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 349 n n PA O2A NAP sing 350 n n PA O5B NAP sing 351 n n PA O3 NAP sing 352 n n O2A HOA2 NAP sing 353 n n O5B C5B NAP sing 354 n n C5B C4B NAP sing 355 n n C5B H51A NAP sing 356 n n C5B H52A NAP sing 357 n n C4B O4B NAP sing 358 n n C4B C3B NAP sing 359 n n C4B H4B NAP sing 360 n n O4B C1B NAP sing 361 n n C3B O3B NAP sing 362 n n C3B C2B NAP sing 363 n n C3B H3B NAP sing 364 n n O3B HO3A NAP sing 365 n n C2B O2B NAP sing 366 n n C2B C1B NAP sing 367 n n C2B H2B NAP sing 368 n n O2B P2B NAP sing 369 n n C1B N9A NAP sing 370 n n C1B H1B NAP sing 371 n n N9A C8A NAP sing 372 n y N9A C4A NAP sing 373 n y C8A N7A NAP doub 374 n y C8A H8A NAP sing 375 n n N7A C5A NAP sing 376 n y C5A C6A NAP sing 377 n y C5A C4A NAP doub 378 n y C6A N6A NAP sing 379 n n C6A N1A NAP doub 380 n y N6A H61A NAP sing 381 n n N6A H62A NAP sing 382 n n N1A C2A NAP sing 383 n y C2A N3A NAP doub 384 n y C2A H2A NAP sing 385 n n N3A C4A NAP sing 386 n y O3 PN NAP sing 387 n n PN O1N NAP doub 388 n n PN O2N NAP sing 389 n n PN O5D NAP sing 390 n n O5D C5D NAP sing 391 n n C5D C4D NAP sing 392 n n C5D H51N NAP sing 393 n n C5D H52N NAP sing 394 n n C4D O4D NAP sing 395 n n C4D C3D NAP sing 396 n n C4D H4D NAP sing 397 n n O4D C1D NAP sing 398 n n C3D O3D NAP sing 399 n n C3D C2D NAP sing 400 n n C3D H3D NAP sing 401 n n O3D HO3N NAP sing 402 n n C2D O2D NAP sing 403 n n C2D C1D NAP sing 404 n n C2D H2D NAP sing 405 n n O2D HO2N NAP sing 406 n n C1D N1N NAP sing 407 n n C1D H1D NAP sing 408 n n N1N C2N NAP sing 409 n y N1N C6N NAP doub 410 n y C2N C3N NAP doub 411 n y C2N H2N NAP sing 412 n n C3N C7N NAP sing 413 n n C3N C4N NAP sing 414 n y C7N O7N NAP doub 415 n n C7N N7N NAP sing 416 n n N7N H71N NAP sing 417 n n N7N H72N NAP sing 418 n n C4N C5N NAP doub 419 n y C4N H4N NAP sing 420 n n C5N C6N NAP sing 421 n y C5N H5N NAP sing 422 n n C6N H6N NAP sing 423 n n P2B O1X NAP doub 424 n n P2B O2X NAP sing 425 n n P2B O3X NAP sing 426 n n O2X HOP2 NAP sing 427 n n O3X HOP3 NAP sing 428 n n # _atom_sites.entry_id 2J3N _atom_sites.fract_transf_matrix[1][1] 0.006914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002858 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FAD A 1 600 600 FAD FAD . H 3 NAP A 1 601 601 NAP NAP . I 4 MPD A 1 701 701 MPD MPD . J 2 FAD B 1 600 600 FAD FAD . K 3 NAP B 1 601 601 NAP NAP . L 4 MPD B 1 700 700 MPD MPD . M 4 MPD B 1 701 701 MPD MPD . N 2 FAD C 1 600 600 FAD FAD . O 3 NAP C 1 601 601 NAP NAP . P 2 FAD D 1 600 600 FAD FAD . Q 3 NAP D 1 601 601 NAP NAP . R 4 MPD D 1 700 700 MPD MPD . S 2 FAD E 1 600 600 FAD FAD . T 3 NAP E 1 601 601 NAP NAP . U 2 FAD F 1 600 600 FAD FAD . V 3 NAP F 1 601 601 NAP NAP . W 4 MPD F 1 700 700 MPD MPD . X 5 HOH A 1 2001 2001 HOH HOH . X 5 HOH A 2 2002 2002 HOH HOH . X 5 HOH A 3 2003 2003 HOH HOH . X 5 HOH A 4 2004 2004 HOH HOH . X 5 HOH A 5 2005 2005 HOH HOH . X 5 HOH A 6 2006 2006 HOH HOH . X 5 HOH A 7 2007 2007 HOH HOH . X 5 HOH A 8 2008 2008 HOH HOH . X 5 HOH A 9 2009 2009 HOH HOH . Y 5 HOH B 1 2001 2001 HOH HOH . Y 5 HOH B 2 2002 2002 HOH HOH . Y 5 HOH B 3 2003 2003 HOH HOH . Y 5 HOH B 4 2004 2004 HOH HOH . Y 5 HOH B 5 2005 2005 HOH HOH . Y 5 HOH B 6 2006 2006 HOH HOH . Y 5 HOH B 7 2007 2007 HOH HOH . Y 5 HOH B 8 2008 2008 HOH HOH . Y 5 HOH B 9 2009 2009 HOH HOH . Z 5 HOH C 1 2001 2001 HOH HOH . Z 5 HOH C 2 2002 2002 HOH HOH . Z 5 HOH C 3 2003 2003 HOH HOH . Z 5 HOH C 4 2004 2004 HOH HOH . Z 5 HOH C 5 2005 2005 HOH HOH . Z 5 HOH C 6 2006 2006 HOH HOH . Z 5 HOH C 7 2007 2007 HOH HOH . AA 5 HOH D 1 2001 2001 HOH HOH . AA 5 HOH D 2 2002 2002 HOH HOH . AA 5 HOH D 3 2003 2003 HOH HOH . AA 5 HOH D 4 2004 2004 HOH HOH . AA 5 HOH D 5 2005 2005 HOH HOH . AA 5 HOH D 6 2006 2006 HOH HOH . AA 5 HOH D 7 2007 2007 HOH HOH . AA 5 HOH D 8 2008 2008 HOH HOH . BA 5 HOH E 1 2001 2001 HOH HOH . BA 5 HOH E 2 2002 2002 HOH HOH . BA 5 HOH E 3 2003 2003 HOH HOH . BA 5 HOH E 4 2004 2004 HOH HOH . CA 5 HOH F 1 2001 2001 HOH HOH . CA 5 HOH F 2 2002 2002 HOH HOH . CA 5 HOH F 3 2003 2003 HOH HOH . CA 5 HOH F 4 2004 2004 HOH HOH . CA 5 HOH F 5 2005 2005 HOH HOH . CA 5 HOH F 6 2006 2006 HOH HOH . CA 5 HOH F 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . K 3 -92.717 78.828 10.906 1 86.3 ? PA NAP 601 B 1 HETATM 2 O O1A NAP . . . K 3 -91.905 79.54 9.908 1 86.22 ? O1A NAP 601 B 1 HETATM 3 O O2A NAP . . . K 3 -92.681 79.245 12.331 1 87.2 ? O2A NAP 601 B 1 HETATM 4 O O5B NAP . . . K 3 -92.308 77.31 10.693 1 82.3 ? O5B NAP 601 B 1 HETATM 5 C C5B NAP . . . K 3 -92.783 76.184 11.462 1 77.46 ? C5B NAP 601 B 1 HETATM 6 C C4B NAP . . . K 3 -91.965 75.075 10.831 1 74.4 ? C4B NAP 601 B 1 HETATM 7 O O4B NAP . . . K 3 -93.28 74.785 10.062 1 73.26 ? O4B NAP 601 B 1 HETATM 8 C C3B NAP . . . K 3 -91.264 73.813 10.399 1 71.95 ? C3B NAP 601 B 1 HETATM 9 O O3B NAP . . . K 3 -91.6 72.707 11.282 1 70.51 ? O3B NAP 601 B 1 HETATM 10 C C2B NAP . . . K 3 -91.77 73.656 9.028 1 70.82 ? C2B NAP 601 B 1 HETATM 11 O O2B NAP . . . K 3 -91.187 72.664 8.241 1 67.88 ? O2B NAP 601 B 1 HETATM 12 C C1B NAP . . . K 3 -93.154 73.535 9.365 1 72.53 ? C1B NAP 601 B 1 HETATM 13 N N9A NAP . . . K 3 -94.124 73.478 8.248 1 74.11 ? N9A NAP 601 B 1 HETATM 14 C C8A NAP . . . K 3 -94.661 74.519 7.486 1 73.68 ? C8A NAP 601 B 1 HETATM 15 N N7A NAP . . . K 3 -95.529 74.09 6.56 1 74.04 ? N7A NAP 601 B 1 HETATM 16 C C5A NAP . . . K 3 -95.537 72.741 6.734 1 75.24 ? C5A NAP 601 B 1 HETATM 17 C C6A NAP . . . K 3 -96.258 71.69 6.063 1 76.4 ? C6A NAP 601 B 1 HETATM 18 N N6A NAP . . . K 3 -97.108 71.921 5.065 1 78 ? N6A NAP 601 B 1 HETATM 19 N N1A NAP . . . K 3 -96.025 70.412 6.514 1 76.69 ? N1A NAP 601 B 1 HETATM 20 C C2A NAP . . . K 3 -95.171 70.143 7.528 1 75.53 ? C2A NAP 601 B 1 HETATM 21 N N3A NAP . . . K 3 -94.443 71.06 8.219 1 74.15 ? N3A NAP 601 B 1 HETATM 22 C C4A NAP . . . K 3 -94.669 72.358 7.774 1 74.1 ? C4A NAP 601 B 1 HETATM 23 O O3 NAP . . . K 3 -94.206 78.946 10.329 1 89.55 ? O3 NAP 601 B 1 HETATM 24 P PN NAP . . . K 3 -95.088 80.167 9.786 1 92.96 ? PN NAP 601 B 1 HETATM 25 O O1N NAP . . . K 3 -94.93 81.327 10.694 1 92.85 ? O1N NAP 601 B 1 HETATM 26 O O2N NAP . . . K 3 -96.452 79.627 9.628 1 93.02 ? O2N NAP 601 B 1 HETATM 27 O O5D NAP . . . K 3 -94.566 80.496 8.284 1 95.08 ? O5D NAP 601 B 1 HETATM 28 C C5D NAP . . . K 3 -93.306 81.166 7.957 1 98.38 ? C5D NAP 601 B 1 HETATM 29 C C4D NAP . . . K 3 -93.303 82.625 8.366 1 100.7 ? C4D NAP 601 B 1 HETATM 30 O O4D NAP . . . K 3 -92.569 82.796 9.623 1 101.12 ? O4D NAP 601 B 1 HETATM 31 C C3D NAP . . . K 3 -92.615 83.627 7.406 1 101.3 ? C3D NAP 601 B 1 HETATM 32 O O3D NAP . . . K 3 -93.303 83.896 6.209 1 100.52 ? O3D NAP 601 B 1 HETATM 33 C C2D NAP . . . K 3 -92.385 84.806 8.336 1 101.44 ? C2D NAP 601 B 1 HETATM 34 O O2D NAP . . . K 3 -93.586 85.579 8.414 1 101.29 ? O2D NAP 601 B 1 HETATM 35 C C1D NAP . . . K 3 -91.987 84.093 9.663 1 102.24 ? C1D NAP 601 B 1 HETATM 36 N N1N NAP . . . K 3 -90.49 83.959 9.885 1 103.61 ? N1N NAP 601 B 1 HETATM 37 C C2N NAP . . . K 3 -89.741 83.062 9.142 1 104.42 ? C2N NAP 601 B 1 HETATM 38 C C3N NAP . . . K 3 -88.369 82.913 9.308 1 104.71 ? C3N NAP 601 B 1 HETATM 39 C C7N NAP . . . K 3 -87.552 81.923 8.48 1 105.1 ? C7N NAP 601 B 1 HETATM 40 O O7N NAP . . . K 3 -86.376 82.19 8.204 1 104.92 ? O7N NAP 601 B 1 HETATM 41 N N7N NAP . . . K 3 -88.191 80.798 8.084 1 104.46 ? N7N NAP 601 B 1 HETATM 42 C C4N NAP . . . K 3 -87.697 83.731 10.297 1 104.4 ? C4N NAP 601 B 1 HETATM 43 C C5N NAP . . . K 3 -88.461 84.649 11.059 1 104.58 ? C5N NAP 601 B 1 HETATM 44 C C6N NAP . . . K 3 -89.837 84.775 10.868 1 104.19 ? C6N NAP 601 B 1 HETATM 45 P P2B NAP . . . K 3 -89.763 72.867 7.487 1 65.71 ? P2B NAP 601 B 1 HETATM 46 O O1X NAP . . . K 3 -89.908 72.321 6.106 1 67.48 ? O1X NAP 601 B 1 HETATM 47 O O2X NAP . . . K 3 -89.537 74.367 7.566 1 63.83 ? O2X NAP 601 B 1 HETATM 48 O O3X NAP . . . K 3 -88.793 72.091 8.333 1 67.97 ? O3X NAP 601 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 71 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 48 #