data_2J3N # _model_server_result.job_id 2feZ1q1AVVFEG1WbzZ_zMw _model_server_result.datetime_utc '2025-06-22 15:44:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j3n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":601}' # _entry.id 2J3N # _exptl.entry_id 2J3N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.46 _cell.angle_gamma 90 _cell.entry_id 2J3N _cell.length_a 144.63 _cell.length_b 90.64 _cell.length_c 166.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J3N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 PQS dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K,L,M,X,Y 1 1 C,D,N,O,P,Q,R,Z,AA 2 1 E,F,S,T,U,V,W,BA,CA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 K N N ? 3 O N N ? 3 Q N N ? 3 T N N ? 3 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 79 A CYS 59 1_555 A SG CYS 84 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 B SG CYS 79 B CYS 59 1_555 B SG CYS 84 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 C SG CYS 79 C CYS 59 1_555 C SG CYS 84 C CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf4 D SG CYS 79 D CYS 59 1_555 D SG CYS 84 D CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 E SG CYS 79 E CYS 59 1_555 E SG CYS 84 E CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf6 E SG CYS 517 E CYS 497 1_555 E SG CYS 518 E CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 F SG CYS 79 F CYS 59 1_555 F SG CYS 84 F CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 349 n n PA O2A NAP sing 350 n n PA O5B NAP sing 351 n n PA O3 NAP sing 352 n n O2A HOA2 NAP sing 353 n n O5B C5B NAP sing 354 n n C5B C4B NAP sing 355 n n C5B H51A NAP sing 356 n n C5B H52A NAP sing 357 n n C4B O4B NAP sing 358 n n C4B C3B NAP sing 359 n n C4B H4B NAP sing 360 n n O4B C1B NAP sing 361 n n C3B O3B NAP sing 362 n n C3B C2B NAP sing 363 n n C3B H3B NAP sing 364 n n O3B HO3A NAP sing 365 n n C2B O2B NAP sing 366 n n C2B C1B NAP sing 367 n n C2B H2B NAP sing 368 n n O2B P2B NAP sing 369 n n C1B N9A NAP sing 370 n n C1B H1B NAP sing 371 n n N9A C8A NAP sing 372 n y N9A C4A NAP sing 373 n y C8A N7A NAP doub 374 n y C8A H8A NAP sing 375 n n N7A C5A NAP sing 376 n y C5A C6A NAP sing 377 n y C5A C4A NAP doub 378 n y C6A N6A NAP sing 379 n n C6A N1A NAP doub 380 n y N6A H61A NAP sing 381 n n N6A H62A NAP sing 382 n n N1A C2A NAP sing 383 n y C2A N3A NAP doub 384 n y C2A H2A NAP sing 385 n n N3A C4A NAP sing 386 n y O3 PN NAP sing 387 n n PN O1N NAP doub 388 n n PN O2N NAP sing 389 n n PN O5D NAP sing 390 n n O5D C5D NAP sing 391 n n C5D C4D NAP sing 392 n n C5D H51N NAP sing 393 n n C5D H52N NAP sing 394 n n C4D O4D NAP sing 395 n n C4D C3D NAP sing 396 n n C4D H4D NAP sing 397 n n O4D C1D NAP sing 398 n n C3D O3D NAP sing 399 n n C3D C2D NAP sing 400 n n C3D H3D NAP sing 401 n n O3D HO3N NAP sing 402 n n C2D O2D NAP sing 403 n n C2D C1D NAP sing 404 n n C2D H2D NAP sing 405 n n O2D HO2N NAP sing 406 n n C1D N1N NAP sing 407 n n C1D H1D NAP sing 408 n n N1N C2N NAP sing 409 n y N1N C6N NAP doub 410 n y C2N C3N NAP doub 411 n y C2N H2N NAP sing 412 n n C3N C7N NAP sing 413 n n C3N C4N NAP sing 414 n y C7N O7N NAP doub 415 n n C7N N7N NAP sing 416 n n N7N H71N NAP sing 417 n n N7N H72N NAP sing 418 n n C4N C5N NAP doub 419 n y C4N H4N NAP sing 420 n n C5N C6N NAP sing 421 n y C5N H5N NAP sing 422 n n C6N H6N NAP sing 423 n n P2B O1X NAP doub 424 n n P2B O2X NAP sing 425 n n P2B O3X NAP sing 426 n n O2X HOP2 NAP sing 427 n n O3X HOP3 NAP sing 428 n n # _atom_sites.entry_id 2J3N _atom_sites.fract_transf_matrix[1][1] 0.006914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002858 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FAD A 1 600 600 FAD FAD . H 3 NAP A 1 601 601 NAP NAP . I 4 MPD A 1 701 701 MPD MPD . J 2 FAD B 1 600 600 FAD FAD . K 3 NAP B 1 601 601 NAP NAP . L 4 MPD B 1 700 700 MPD MPD . M 4 MPD B 1 701 701 MPD MPD . N 2 FAD C 1 600 600 FAD FAD . O 3 NAP C 1 601 601 NAP NAP . P 2 FAD D 1 600 600 FAD FAD . Q 3 NAP D 1 601 601 NAP NAP . R 4 MPD D 1 700 700 MPD MPD . S 2 FAD E 1 600 600 FAD FAD . T 3 NAP E 1 601 601 NAP NAP . U 2 FAD F 1 600 600 FAD FAD . V 3 NAP F 1 601 601 NAP NAP . W 4 MPD F 1 700 700 MPD MPD . X 5 HOH A 1 2001 2001 HOH HOH . X 5 HOH A 2 2002 2002 HOH HOH . X 5 HOH A 3 2003 2003 HOH HOH . X 5 HOH A 4 2004 2004 HOH HOH . X 5 HOH A 5 2005 2005 HOH HOH . X 5 HOH A 6 2006 2006 HOH HOH . X 5 HOH A 7 2007 2007 HOH HOH . X 5 HOH A 8 2008 2008 HOH HOH . X 5 HOH A 9 2009 2009 HOH HOH . Y 5 HOH B 1 2001 2001 HOH HOH . Y 5 HOH B 2 2002 2002 HOH HOH . Y 5 HOH B 3 2003 2003 HOH HOH . Y 5 HOH B 4 2004 2004 HOH HOH . Y 5 HOH B 5 2005 2005 HOH HOH . Y 5 HOH B 6 2006 2006 HOH HOH . Y 5 HOH B 7 2007 2007 HOH HOH . Y 5 HOH B 8 2008 2008 HOH HOH . Y 5 HOH B 9 2009 2009 HOH HOH . Z 5 HOH C 1 2001 2001 HOH HOH . Z 5 HOH C 2 2002 2002 HOH HOH . Z 5 HOH C 3 2003 2003 HOH HOH . Z 5 HOH C 4 2004 2004 HOH HOH . Z 5 HOH C 5 2005 2005 HOH HOH . Z 5 HOH C 6 2006 2006 HOH HOH . Z 5 HOH C 7 2007 2007 HOH HOH . AA 5 HOH D 1 2001 2001 HOH HOH . AA 5 HOH D 2 2002 2002 HOH HOH . AA 5 HOH D 3 2003 2003 HOH HOH . AA 5 HOH D 4 2004 2004 HOH HOH . AA 5 HOH D 5 2005 2005 HOH HOH . AA 5 HOH D 6 2006 2006 HOH HOH . AA 5 HOH D 7 2007 2007 HOH HOH . AA 5 HOH D 8 2008 2008 HOH HOH . BA 5 HOH E 1 2001 2001 HOH HOH . BA 5 HOH E 2 2002 2002 HOH HOH . BA 5 HOH E 3 2003 2003 HOH HOH . BA 5 HOH E 4 2004 2004 HOH HOH . CA 5 HOH F 1 2001 2001 HOH HOH . CA 5 HOH F 2 2002 2002 HOH HOH . CA 5 HOH F 3 2003 2003 HOH HOH . CA 5 HOH F 4 2004 2004 HOH HOH . CA 5 HOH F 5 2005 2005 HOH HOH . CA 5 HOH F 6 2006 2006 HOH HOH . CA 5 HOH F 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . Q 3 -31.176 47.203 11.246 1 68.05 ? PA NAP 601 D 1 HETATM 2 O O1A NAP . . . Q 3 -30.432 46.576 12.341 1 69.25 ? O1A NAP 601 D 1 HETATM 3 O O2A NAP . . . Q 3 -30.432 47.315 9.957 1 68.32 ? O2A NAP 601 D 1 HETATM 4 O O5B NAP . . . Q 3 -31.686 48.633 11.776 1 59.58 ? O5B NAP 601 D 1 HETATM 5 C C5B NAP . . . Q 3 -32.62 49.365 10.937 1 49.73 ? C5B NAP 601 D 1 HETATM 6 C C4B NAP . . . Q 3 -32.974 50.783 11.463 1 42.32 ? C4B NAP 601 D 1 HETATM 7 O O4B NAP . . . Q 3 -31.804 51.65 10.999 1 40.51 ? O4B NAP 601 D 1 HETATM 8 C C3B NAP . . . Q 3 -34.091 51.365 10.685 1 39.14 ? C3B NAP 601 D 1 HETATM 9 O O3B NAP . . . Q 3 -34.652 52.413 11.469 1 36.39 ? O3B NAP 601 D 1 HETATM 10 C C2B NAP . . . Q 3 -33.459 51.849 9.435 1 38.76 ? C2B NAP 601 D 1 HETATM 11 O O2B NAP . . . Q 3 -34.325 52.497 8.541 1 41 ? O2B NAP 601 D 1 HETATM 12 C C1B NAP . . . Q 3 -32.303 52.593 9.96 1 37.28 ? C1B NAP 601 D 1 HETATM 13 N N9A NAP . . . Q 3 -31.274 52.82 8.902 1 33.39 ? N9A NAP 601 D 1 HETATM 14 C C8A NAP . . . Q 3 -30.537 51.86 8.244 1 31.96 ? C8A NAP 601 D 1 HETATM 15 N N7A NAP . . . Q 3 -29.681 52.343 7.346 1 27.95 ? N7A NAP 601 D 1 HETATM 16 C C5A NAP . . . Q 3 -29.867 53.658 7.411 1 26.92 ? C5A NAP 601 D 1 HETATM 17 C C6A NAP . . . Q 3 -29.239 54.675 6.689 1 26.92 ? C6A NAP 601 D 1 HETATM 18 N N6A NAP . . . Q 3 -28.305 54.418 5.775 1 27.43 ? N6A NAP 601 D 1 HETATM 19 N N1A NAP . . . Q 3 -29.639 55.955 6.98 1 26.81 ? N1A NAP 601 D 1 HETATM 20 C C2A NAP . . . Q 3 -30.601 56.224 7.927 1 28.26 ? C2A NAP 601 D 1 HETATM 21 N N3A NAP . . . Q 3 -31.273 55.297 8.68 1 26.69 ? N3A NAP 601 D 1 HETATM 22 C C4A NAP . . . Q 3 -30.857 54.006 8.374 1 29.41 ? C4A NAP 601 D 1 HETATM 23 O O3 NAP . . . Q 3 -32.515 46.439 10.85 1 76.92 ? O3 NAP 601 D 1 HETATM 24 P PN NAP . . . Q 3 -33.055 45.997 9.407 1 84.94 ? PN NAP 601 D 1 HETATM 25 O O1N NAP . . . Q 3 -33.114 47.196 8.505 1 83.52 ? O1N NAP 601 D 1 HETATM 26 O O2N NAP . . . Q 3 -34.352 45.264 9.657 1 85.05 ? O2N NAP 601 D 1 HETATM 27 O O5D NAP . . . Q 3 -31.965 44.921 8.844 1 85.54 ? O5D NAP 601 D 1 HETATM 28 C C5D NAP . . . Q 3 -31.343 43.888 9.673 1 87.37 ? C5D NAP 601 D 1 HETATM 29 C C4D NAP . . . Q 3 -31.829 42.486 9.326 1 87.76 ? C4D NAP 601 D 1 HETATM 30 O O4D NAP . . . Q 3 -32.48 41.886 10.479 1 87.05 ? O4D NAP 601 D 1 HETATM 31 C C3D NAP . . . Q 3 -32.867 42.357 8.176 1 87.47 ? C3D NAP 601 D 1 HETATM 32 O O3D NAP . . . Q 3 -32.293 42.389 6.891 1 86.9 ? O3D NAP 601 D 1 HETATM 33 C C2D NAP . . . Q 3 -33.616 41.085 8.527 1 86.77 ? C2D NAP 601 D 1 HETATM 34 O O2D NAP . . . Q 3 -32.992 39.978 7.865 1 86.1 ? O2D NAP 601 D 1 HETATM 35 C C1D NAP . . . Q 3 -33.553 41.05 10.081 1 86.44 ? C1D NAP 601 D 1 HETATM 36 N N1N NAP . . . Q 3 -34.792 41.516 10.854 1 85.27 ? N1N NAP 601 D 1 HETATM 37 C C2N NAP . . . Q 3 -34.754 41.49 12.25 1 84.39 ? C2N NAP 601 D 1 HETATM 38 C C3N NAP . . . Q 3 -35.854 41.898 13.042 1 82.55 ? C3N NAP 601 D 1 HETATM 39 C C7N NAP . . . Q 3 -35.843 41.876 14.592 1 80.27 ? C7N NAP 601 D 1 HETATM 40 O O7N NAP . . . Q 3 -34.864 41.43 15.186 1 78.38 ? O7N NAP 601 D 1 HETATM 41 N N7N NAP . . . Q 3 -36.936 42.35 15.218 1 77.96 ? N7N NAP 601 D 1 HETATM 42 C C4N NAP . . . Q 3 -37.052 42.354 12.358 1 83.51 ? C4N NAP 601 D 1 HETATM 43 C C5N NAP . . . Q 3 -37.077 42.374 10.941 1 83.69 ? C5N NAP 601 D 1 HETATM 44 C C6N NAP . . . Q 3 -35.98 41.966 10.191 1 84.54 ? C6N NAP 601 D 1 HETATM 45 P P2B NAP . . . Q 3 -35.511 51.688 7.785 1 41.99 ? P2B NAP 601 D 1 HETATM 46 O O1X NAP . . . Q 3 -34.869 50.405 7.305 1 40.57 ? O1X NAP 601 D 1 HETATM 47 O O2X NAP . . . Q 3 -36.568 51.527 8.867 1 37.79 ? O2X NAP 601 D 1 HETATM 48 O O3X NAP . . . Q 3 -35.954 52.619 6.669 1 42.2 ? O3X NAP 601 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 48 #